Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23395 and BWI76_RS23400 are separated by 71 nucleotides BWI76_RS23400 and BWI76_RS23405 are separated by 322 nucleotides
BWI76_RS23395: BWI76_RS23395 - sugar ABC transporter substrate-binding protein, at 4,878,240 to 4,879,526
_RS23395
BWI76_RS23400: BWI76_RS23400 - oligogalacturonide lyase, at 4,879,598 to 4,880,725
_RS23400
BWI76_RS23405: BWI76_RS23405 - porin, at 4,881,048 to 4,882,391
_RS23405
Position (kb)
4879
4880
4881 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4878.637 kb on - strand, within BWI76_RS23395 at 4878.955 kb on - strand, within BWI76_RS23395 at 4878.959 kb on + strand, within BWI76_RS23395 at 4878.969 kb on - strand, within BWI76_RS23395 at 4879.015 kb on - strand, within BWI76_RS23395 at 4879.015 kb on - strand, within BWI76_RS23395 at 4879.100 kb on - strand, within BWI76_RS23395 at 4879.102 kb on + strand, within BWI76_RS23395 at 4879.123 kb on + strand, within BWI76_RS23395 at 4879.287 kb on + strand, within BWI76_RS23395 at 4879.428 kb on + strand at 4879.434 kb on - strand at 4879.583 kb on + strand at 4879.647 kb on - strand at 4879.816 kb on + strand, within BWI76_RS23400 at 4879.916 kb on + strand, within BWI76_RS23400 at 4879.938 kb on - strand, within BWI76_RS23400 at 4879.963 kb on + strand, within BWI76_RS23400 at 4880.063 kb on - strand, within BWI76_RS23400 at 4880.420 kb on - strand, within BWI76_RS23400 at 4880.573 kb on + strand, within BWI76_RS23400 at 4880.715 kb on - strand at 4880.748 kb on + strand at 4880.756 kb on - strand at 4880.756 kb on - strand at 4880.975 kb on + strand at 4881.010 kb on - strand at 4881.021 kb on - strand at 4881.203 kb on - strand, within BWI76_RS23405 at 4881.205 kb on + strand, within BWI76_RS23405 at 4881.247 kb on + strand, within BWI76_RS23405 at 4881.251 kb on - strand, within BWI76_RS23405 at 4881.282 kb on - strand, within BWI76_RS23405 at 4881.312 kb on + strand, within BWI76_RS23405 at 4881.315 kb on - strand, within BWI76_RS23405 at 4881.388 kb on + strand, within BWI76_RS23405 at 4881.673 kb on + strand, within BWI76_RS23405 at 4881.681 kb on - strand, within BWI76_RS23405 at 4881.688 kb on - strand, within BWI76_RS23405 at 4881.688 kb on - strand, within BWI76_RS23405 at 4881.711 kb on + strand, within BWI76_RS23405 at 4881.712 kb on + strand, within BWI76_RS23405
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 4,878,637 - BWI76_RS23395 0.31 -2.3 4,878,955 - BWI76_RS23395 0.56 -0.7 4,878,959 + BWI76_RS23395 0.56 +0.2 4,878,969 - BWI76_RS23395 0.57 +0.3 4,879,015 - BWI76_RS23395 0.60 +1.1 4,879,015 - BWI76_RS23395 0.60 -2.7 4,879,100 - BWI76_RS23395 0.67 -2.7 4,879,102 + BWI76_RS23395 0.67 +1.7 4,879,123 + BWI76_RS23395 0.69 +0.0 4,879,287 + BWI76_RS23395 0.81 +0.1 4,879,428 + +0.5 4,879,434 - -0.1 4,879,583 + +0.5 4,879,647 - +0.6 4,879,816 + BWI76_RS23400 0.19 -0.4 4,879,916 + BWI76_RS23400 0.28 -2.4 4,879,938 - BWI76_RS23400 0.30 -1.0 4,879,963 + BWI76_RS23400 0.32 +1.2 4,880,063 - BWI76_RS23400 0.41 -0.7 4,880,420 - BWI76_RS23400 0.73 -1.3 4,880,573 + BWI76_RS23400 0.86 +1.3 4,880,715 - +0.2 4,880,748 + +0.5 4,880,756 - -1.8 4,880,756 - -0.4 4,880,975 + -0.8 4,881,010 - +0.0 4,881,021 - +0.7 4,881,203 - BWI76_RS23405 0.12 -1.1 4,881,205 + BWI76_RS23405 0.12 -0.8 4,881,247 + BWI76_RS23405 0.15 +0.3 4,881,251 - BWI76_RS23405 0.15 -0.8 4,881,282 - BWI76_RS23405 0.17 -1.6 4,881,312 + BWI76_RS23405 0.20 -0.7 4,881,315 - BWI76_RS23405 0.20 -0.6 4,881,388 + BWI76_RS23405 0.25 -0.6 4,881,673 + BWI76_RS23405 0.47 +1.9 4,881,681 - BWI76_RS23405 0.47 -0.3 4,881,688 - BWI76_RS23405 0.48 -1.4 4,881,688 - BWI76_RS23405 0.48 +2.1 4,881,711 + BWI76_RS23405 0.49 +0.4 4,881,712 + BWI76_RS23405 0.49 -0.1
Or see this region's nucleotide sequence