Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21890 and BWI76_RS21895 are separated by 9 nucleotides BWI76_RS21895 and BWI76_RS21900 are separated by 24 nucleotides BWI76_RS21900 and BWI76_RS21905 are separated by 0 nucleotides BWI76_RS21905 and BWI76_RS21910 are separated by 5 nucleotides
BWI76_RS21890: BWI76_RS21890 - oxidoreductase, at 4,574,091 to 4,575,167
_RS21890
BWI76_RS21895: BWI76_RS21895 - amino acid ABC transport system periplasmic amino acid-binding component, at 4,575,177 to 4,575,980
_RS21895
BWI76_RS21900: BWI76_RS21900 - amino acid ABC transporter permease/ATP-binding protein, at 4,576,005 to 4,577,525
_RS21900
BWI76_RS21905: BWI76_RS21905 - class II aldolase, at 4,577,526 to 4,578,254
_RS21905
BWI76_RS21910: BWI76_RS21910 - glyoxylate/hydroxypyruvate reductase A, at 4,578,260 to 4,579,192
_RS21910
Position (kb) 4576
4577
4578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4575.036 kb on + strand, within BWI76_RS21890 at 4575.044 kb on - strand, within BWI76_RS21890 at 4575.068 kb on + strand at 4575.221 kb on - strand at 4575.221 kb on - strand at 4575.272 kb on + strand, within BWI76_RS21895 at 4575.357 kb on + strand, within BWI76_RS21895 at 4575.520 kb on + strand, within BWI76_RS21895 at 4575.520 kb on + strand, within BWI76_RS21895 at 4575.526 kb on - strand, within BWI76_RS21895 at 4575.527 kb on - strand, within BWI76_RS21895 at 4575.573 kb on - strand, within BWI76_RS21895 at 4575.606 kb on - strand, within BWI76_RS21895 at 4575.657 kb on + strand, within BWI76_RS21895 at 4575.818 kb on - strand, within BWI76_RS21895 at 4575.885 kb on - strand, within BWI76_RS21895 at 4575.924 kb on - strand at 4575.925 kb on - strand at 4576.142 kb on + strand at 4576.143 kb on - strand at 4576.144 kb on + strand at 4576.159 kb on + strand, within BWI76_RS21900 at 4576.250 kb on + strand, within BWI76_RS21900 at 4576.261 kb on + strand, within BWI76_RS21900 at 4576.327 kb on + strand, within BWI76_RS21900 at 4576.400 kb on - strand, within BWI76_RS21900 at 4576.400 kb on - strand, within BWI76_RS21900 at 4576.400 kb on - strand, within BWI76_RS21900 at 4576.550 kb on + strand, within BWI76_RS21900 at 4576.584 kb on - strand, within BWI76_RS21900 at 4576.648 kb on - strand, within BWI76_RS21900 at 4576.648 kb on - strand, within BWI76_RS21900 at 4576.690 kb on + strand, within BWI76_RS21900 at 4576.905 kb on + strand, within BWI76_RS21900 at 4577.012 kb on - strand, within BWI76_RS21900 at 4577.076 kb on + strand, within BWI76_RS21900 at 4577.115 kb on - strand, within BWI76_RS21900 at 4577.449 kb on - strand at 4577.723 kb on + strand, within BWI76_RS21905 at 4577.733 kb on + strand, within BWI76_RS21905 at 4577.741 kb on - strand, within BWI76_RS21905 at 4578.165 kb on - strand, within BWI76_RS21905 at 4578.167 kb on + strand, within BWI76_RS21905 at 4578.230 kb on + strand at 4578.296 kb on + strand at 4578.304 kb on - strand at 4578.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 4,575,036 + BWI76_RS21890 0.88 +0.0 4,575,044 - BWI76_RS21890 0.88 -1.5 4,575,068 + -0.9 4,575,221 - -0.5 4,575,221 - +0.1 4,575,272 + BWI76_RS21895 0.12 +0.9 4,575,357 + BWI76_RS21895 0.22 +1.0 4,575,520 + BWI76_RS21895 0.43 -1.2 4,575,520 + BWI76_RS21895 0.43 +0.2 4,575,526 - BWI76_RS21895 0.43 -0.2 4,575,527 - BWI76_RS21895 0.44 -0.9 4,575,573 - BWI76_RS21895 0.49 +0.6 4,575,606 - BWI76_RS21895 0.53 -0.0 4,575,657 + BWI76_RS21895 0.60 -0.1 4,575,818 - BWI76_RS21895 0.80 -0.3 4,575,885 - BWI76_RS21895 0.88 +0.9 4,575,924 - -0.9 4,575,925 - -1.4 4,576,142 + +0.0 4,576,143 - +2.5 4,576,144 + +0.1 4,576,159 + BWI76_RS21900 0.10 -3.1 4,576,250 + BWI76_RS21900 0.16 -2.4 4,576,261 + BWI76_RS21900 0.17 -0.8 4,576,327 + BWI76_RS21900 0.21 -0.7 4,576,400 - BWI76_RS21900 0.26 -0.7 4,576,400 - BWI76_RS21900 0.26 -0.3 4,576,400 - BWI76_RS21900 0.26 -1.7 4,576,550 + BWI76_RS21900 0.36 -0.2 4,576,584 - BWI76_RS21900 0.38 +0.4 4,576,648 - BWI76_RS21900 0.42 +0.9 4,576,648 - BWI76_RS21900 0.42 -1.1 4,576,690 + BWI76_RS21900 0.45 -0.6 4,576,905 + BWI76_RS21900 0.59 +0.2 4,577,012 - BWI76_RS21900 0.66 +0.3 4,577,076 + BWI76_RS21900 0.70 -0.8 4,577,115 - BWI76_RS21900 0.73 -0.0 4,577,449 - -0.8 4,577,723 + BWI76_RS21905 0.27 -0.5 4,577,733 + BWI76_RS21905 0.28 +0.9 4,577,741 - BWI76_RS21905 0.29 -0.4 4,578,165 - BWI76_RS21905 0.88 -1.5 4,578,167 + BWI76_RS21905 0.88 -0.1 4,578,230 + -2.2 4,578,296 + +0.9 4,578,304 - -0.8 4,578,342 - +1.3
Or see this region's nucleotide sequence