Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20235

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20225 and BWI76_RS20230 are separated by 86 nucleotidesBWI76_RS20230 and BWI76_RS20235 are separated by 336 nucleotidesBWI76_RS20235 and BWI76_RS20240 are separated by 76 nucleotides BWI76_RS20225: BWI76_RS20225 - hypothetical protein, at 4,239,004 to 4,239,498 _RS20225 BWI76_RS20230: BWI76_RS20230 - hypothetical protein, at 4,239,585 to 4,240,040 _RS20230 BWI76_RS20235: BWI76_RS20235 - acetate kinase, at 4,240,377 to 4,241,579 _RS20235 BWI76_RS20240: BWI76_RS20240 - phosphate acetyltransferase, at 4,241,656 to 4,243,800 _RS20240 Position (kb) 4240 4241 4242Strain fitness (log2 ratio) -2 -1 0 1 2at 4239.469 kb on + strandat 4239.516 kb on + strandat 4239.637 kb on - strand, within BWI76_RS20230at 4239.643 kb on + strand, within BWI76_RS20230at 4240.035 kb on + strandat 4240.164 kb on - strandat 4240.747 kb on + strand, within BWI76_RS20235at 4241.607 kb on + strandat 4241.964 kb on - strand, within BWI76_RS20240

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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4,239,469 + +1.0
4,239,516 + +2.3
4,239,637 - BWI76_RS20230 0.11 -2.2
4,239,643 + BWI76_RS20230 0.13 -1.2
4,240,035 + -0.7
4,240,164 - -1.3
4,240,747 + BWI76_RS20235 0.31 -1.2
4,241,607 + -1.7
4,241,964 - BWI76_RS20240 0.14 -0.8

Or see this region's nucleotide sequence