Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19645 and BWI76_RS19650 are separated by 288 nucleotides BWI76_RS19650 and BWI76_RS19655 are separated by 155 nucleotides
BWI76_RS19645: BWI76_RS19645 - galactose ABC transporter substrate-binding protein, at 4,105,609 to 4,106,607
_RS19645
BWI76_RS19650: BWI76_RS19650 - DNA-binding transcriptional regulator GalS, at 4,106,896 to 4,107,918
_RS19650
BWI76_RS19655: BWI76_RS19655 - hypothetical protein, at 4,108,074 to 4,109,231
_RS19655
Position (kb)
4106
4107
4108 Strain fitness (log2 ratio)
-2
-1
0
1 at 4106.096 kb on + strand, within BWI76_RS19645 at 4106.111 kb on + strand, within BWI76_RS19645 at 4106.187 kb on - strand, within BWI76_RS19645 at 4106.239 kb on + strand, within BWI76_RS19645 at 4106.295 kb on - strand, within BWI76_RS19645 at 4106.466 kb on + strand, within BWI76_RS19645 at 4106.471 kb on + strand, within BWI76_RS19645 at 4106.532 kb on + strand at 4106.538 kb on - strand at 4106.587 kb on + strand at 4106.610 kb on + strand at 4106.718 kb on + strand at 4106.802 kb on + strand at 4107.004 kb on + strand, within BWI76_RS19650 at 4107.181 kb on + strand, within BWI76_RS19650 at 4107.198 kb on - strand, within BWI76_RS19650 at 4107.207 kb on + strand, within BWI76_RS19650 at 4107.398 kb on + strand, within BWI76_RS19650 at 4107.434 kb on - strand, within BWI76_RS19650 at 4107.528 kb on + strand, within BWI76_RS19650 at 4107.680 kb on + strand, within BWI76_RS19650 at 4107.850 kb on + strand at 4108.026 kb on - strand at 4108.231 kb on - strand, within BWI76_RS19655 at 4108.385 kb on - strand, within BWI76_RS19655 at 4108.552 kb on + strand, within BWI76_RS19655
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 4,106,096 + BWI76_RS19645 0.49 -2.4 4,106,111 + BWI76_RS19645 0.50 -0.1 4,106,187 - BWI76_RS19645 0.58 +0.0 4,106,239 + BWI76_RS19645 0.63 +1.2 4,106,295 - BWI76_RS19645 0.69 +0.8 4,106,466 + BWI76_RS19645 0.86 +0.5 4,106,471 + BWI76_RS19645 0.86 +0.5 4,106,532 + -0.3 4,106,538 - +0.2 4,106,587 + -1.2 4,106,610 + -0.7 4,106,718 + -0.2 4,106,802 + +0.3 4,107,004 + BWI76_RS19650 0.11 -0.6 4,107,181 + BWI76_RS19650 0.28 -0.9 4,107,198 - BWI76_RS19650 0.30 -1.1 4,107,207 + BWI76_RS19650 0.30 -1.4 4,107,398 + BWI76_RS19650 0.49 -0.6 4,107,434 - BWI76_RS19650 0.53 -1.8 4,107,528 + BWI76_RS19650 0.62 +0.1 4,107,680 + BWI76_RS19650 0.77 -0.3 4,107,850 + +0.3 4,108,026 - +0.9 4,108,231 - BWI76_RS19655 0.14 -0.8 4,108,385 - BWI76_RS19655 0.27 +0.3 4,108,552 + BWI76_RS19655 0.41 +0.1
Or see this region's nucleotide sequence