Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18795

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS18790 and BWI76_RS18795 are separated by 42 nucleotidesBWI76_RS18795 and BWI76_RS18800 are separated by 1 nucleotidesBWI76_RS18800 and BWI76_RS18805 are separated by 7 nucleotides BWI76_RS18790: BWI76_RS18790 - elongation factor G, at 3,894,811 to 3,896,913 _RS18790 BWI76_RS18795: BWI76_RS18795 - hypothetical protein, at 3,896,956 to 3,897,150 _RS18795 BWI76_RS18800: BWI76_RS18800 - transcriptional regulator, at 3,897,152 to 3,897,463 _RS18800 BWI76_RS18805: BWI76_RS18805 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 3,897,471 to 3,900,986 _RS18805 Position (kb) 3896 3897 3898Strain fitness (log2 ratio) -1 0 1at 3896.002 kb on + strand, within BWI76_RS18790at 3896.273 kb on + strand, within BWI76_RS18790at 3896.311 kb on - strand, within BWI76_RS18790at 3896.380 kb on + strand, within BWI76_RS18790at 3896.648 kb on - strand, within BWI76_RS18790at 3896.658 kb on + strand, within BWI76_RS18790at 3897.135 kb on - strandat 3897.268 kb on + strand, within BWI76_RS18800

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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3,896,002 + BWI76_RS18790 0.57 +1.1
3,896,273 + BWI76_RS18790 0.70 +0.5
3,896,311 - BWI76_RS18790 0.71 +0.1
3,896,380 + BWI76_RS18790 0.75 -0.5
3,896,648 - BWI76_RS18790 0.87 -0.2
3,896,658 + BWI76_RS18790 0.88 +0.9
3,897,135 - +1.2
3,897,268 + BWI76_RS18800 0.37 +0.7

Or see this region's nucleotide sequence