Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13385

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13375 and BWI76_RS13380 are separated by 11 nucleotidesBWI76_RS13380 and BWI76_RS13385 are separated by 168 nucleotidesBWI76_RS13385 and BWI76_RS13390 overlap by 1 nucleotides BWI76_RS13375: BWI76_RS13375 - protease, at 2,789,088 to 2,791,052 _RS13375 BWI76_RS13380: BWI76_RS13380 - hypothetical protein, at 2,791,064 to 2,791,297 _RS13380 BWI76_RS13385: BWI76_RS13385 - DUF2474 domain-containing protein, at 2,791,466 to 2,791,591 _RS13385 BWI76_RS13390: BWI76_RS13390 - ubiquinol oxidase subunit II, at 2,791,591 to 2,792,601 _RS13390 Position (kb) 2791 2792Strain fitness (log2 ratio) -2 -1 0 1at 2790.470 kb on + strand, within BWI76_RS13375at 2791.123 kb on + strand, within BWI76_RS13380at 2791.232 kb on + strand, within BWI76_RS13380at 2791.348 kb on + strandat 2791.609 kb on + strandat 2791.672 kb on + strandat 2791.692 kb on + strand, within BWI76_RS13390at 2791.692 kb on + strand, within BWI76_RS13390at 2791.700 kb on - strand, within BWI76_RS13390at 2791.742 kb on - strand, within BWI76_RS13390at 2791.948 kb on - strand, within BWI76_RS13390at 2792.004 kb on + strand, within BWI76_RS13390at 2792.458 kb on + strand, within BWI76_RS13390at 2792.540 kb on + strandat 2792.548 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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2,790,470 + BWI76_RS13375 0.70 +0.5
2,791,123 + BWI76_RS13380 0.25 -1.8
2,791,232 + BWI76_RS13380 0.72 +0.0
2,791,348 + +1.5
2,791,609 + -0.8
2,791,672 + +0.2
2,791,692 + BWI76_RS13390 0.10 -1.3
2,791,692 + BWI76_RS13390 0.10 +0.0
2,791,700 - BWI76_RS13390 0.11 -1.3
2,791,742 - BWI76_RS13390 0.15 +0.5
2,791,948 - BWI76_RS13390 0.35 -0.1
2,792,004 + BWI76_RS13390 0.41 -0.1
2,792,458 + BWI76_RS13390 0.86 +0.7
2,792,540 + +0.0
2,792,548 - -0.5

Or see this region's nucleotide sequence