Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11805 and BWI76_RS11810 are separated by 313 nucleotides BWI76_RS11810 and BWI76_RS11815 are separated by 97 nucleotides BWI76_RS11815 and BWI76_RS11820 are separated by 214 nucleotides
BWI76_RS11805: BWI76_RS11805 - hypothetical protein, at 2,483,314 to 2,484,057
_RS11805
BWI76_RS11810: BWI76_RS11810 - outer membrane protein OmpW, at 2,484,371 to 2,485,009
_RS11810
BWI76_RS11815: BWI76_RS11815 - hypothetical protein, at 2,485,107 to 2,485,352
_RS11815
BWI76_RS11820: BWI76_RS11820 - short-chain dehydrogenase/reductase SDR, at 2,485,567 to 2,486,271
_RS11820
Position (kb)
2484
2485
2486 Strain fitness (log2 ratio)
-2
-1
0
1 at 2483.407 kb on - strand, within BWI76_RS11805 at 2483.509 kb on + strand, within BWI76_RS11805 at 2483.919 kb on + strand, within BWI76_RS11805 at 2483.952 kb on - strand, within BWI76_RS11805 at 2484.066 kb on - strand at 2484.120 kb on + strand at 2484.126 kb on - strand at 2484.197 kb on + strand at 2484.323 kb on + strand at 2484.521 kb on - strand, within BWI76_RS11810 at 2484.588 kb on + strand, within BWI76_RS11810 at 2484.801 kb on + strand, within BWI76_RS11810 at 2485.030 kb on + strand at 2485.279 kb on + strand, within BWI76_RS11815 at 2485.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 2,483,407 - BWI76_RS11805 0.12 +0.5 2,483,509 + BWI76_RS11805 0.26 +0.0 2,483,919 + BWI76_RS11805 0.81 +0.5 2,483,952 - BWI76_RS11805 0.86 -0.2 2,484,066 - -0.3 2,484,120 + +0.9 2,484,126 - +0.9 2,484,197 + -0.6 2,484,323 + +0.6 2,484,521 - BWI76_RS11810 0.23 -1.4 2,484,588 + BWI76_RS11810 0.34 -0.9 2,484,801 + BWI76_RS11810 0.67 -2.3 2,485,030 + +1.1 2,485,279 + BWI76_RS11815 0.70 +0.5 2,485,498 - -0.5
Or see this region's nucleotide sequence