Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10290

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10285 and BWI76_RS10290 are separated by 191 nucleotidesBWI76_RS10290 and BWI76_RS10295 are separated by 51 nucleotides BWI76_RS10285: BWI76_RS10285 - family 3 extracellular solute-binding protein, at 2,177,825 to 2,178,637 _RS10285 BWI76_RS10290: BWI76_RS10290 - transcriptional regulator, at 2,178,829 to 2,179,725 _RS10290 BWI76_RS10295: BWI76_RS10295 - short chain dehydrogenase/reductase family oxidoreductase, at 2,179,777 to 2,180,562 _RS10295 Position (kb) 2178 2179 2180Strain fitness (log2 ratio) -2 -1 0 1 2at 2177.981 kb on - strand, within BWI76_RS10285at 2178.350 kb on - strand, within BWI76_RS10285at 2178.471 kb on + strand, within BWI76_RS10285at 2178.488 kb on - strand, within BWI76_RS10285at 2178.842 kb on - strandat 2179.198 kb on + strand, within BWI76_RS10290at 2179.198 kb on + strand, within BWI76_RS10290at 2179.206 kb on - strand, within BWI76_RS10290at 2179.206 kb on - strand, within BWI76_RS10290at 2179.255 kb on + strand, within BWI76_RS10290at 2179.499 kb on + strand, within BWI76_RS10290at 2179.507 kb on - strandat 2179.520 kb on + strandat 2179.622 kb on + strand, within BWI76_RS10290at 2180.288 kb on + strand, within BWI76_RS10295at 2180.309 kb on + strand, within BWI76_RS10295at 2180.453 kb on - strand, within BWI76_RS10295at 2180.466 kb on - strand, within BWI76_RS10295

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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2,177,981 - BWI76_RS10285 0.19 -0.2
2,178,350 - BWI76_RS10285 0.65 +0.7
2,178,471 + BWI76_RS10285 0.79 -0.9
2,178,488 - BWI76_RS10285 0.82 +2.2
2,178,842 - +0.2
2,179,198 + BWI76_RS10290 0.41 +0.3
2,179,198 + BWI76_RS10290 0.41 -0.7
2,179,206 - BWI76_RS10290 0.42 +0.1
2,179,206 - BWI76_RS10290 0.42 -0.7
2,179,255 + BWI76_RS10290 0.47 -0.4
2,179,499 + BWI76_RS10290 0.75 +0.0
2,179,507 - +1.2
2,179,520 + +0.0
2,179,622 + BWI76_RS10290 0.88 +2.1
2,180,288 + BWI76_RS10295 0.65 -2.0
2,180,309 + BWI76_RS10295 0.68 -0.6
2,180,453 - BWI76_RS10295 0.86 +0.3
2,180,466 - BWI76_RS10295 0.88 -1.2

Or see this region's nucleotide sequence