Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07840 and BWI76_RS07845 are separated by 121 nucleotides BWI76_RS07845 and BWI76_RS07850 are separated by 145 nucleotides
BWI76_RS07840: BWI76_RS07840 - inositol monophosphatase family protein, at 1,663,084 to 1,663,893
_RS07840
BWI76_RS07845: BWI76_RS07845 - LacI family transcriptional regulator, at 1,664,015 to 1,665,004
_RS07845
BWI76_RS07850: BWI76_RS07850 - putative cytosine deaminase-related metal-dependent hydrolase, at 1,665,150 to 1,666,388
_RS07850
Position (kb)
1664
1665
1666 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1663.016 kb on - strand at 1663.062 kb on + strand at 1663.379 kb on + strand, within BWI76_RS07840 at 1663.392 kb on + strand, within BWI76_RS07840 at 1663.521 kb on - strand, within BWI76_RS07840 at 1663.652 kb on + strand, within BWI76_RS07840 at 1664.429 kb on - strand, within BWI76_RS07845 at 1664.872 kb on - strand, within BWI76_RS07845 at 1664.928 kb on - strand at 1665.026 kb on - strand at 1665.090 kb on + strand at 1665.183 kb on - strand at 1665.221 kb on - strand at 1665.250 kb on - strand at 1665.323 kb on + strand, within BWI76_RS07850 at 1665.432 kb on - strand, within BWI76_RS07850 at 1665.631 kb on - strand, within BWI76_RS07850 at 1665.681 kb on - strand, within BWI76_RS07850 at 1665.762 kb on + strand, within BWI76_RS07850 at 1665.921 kb on + strand, within BWI76_RS07850
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 1,663,016 - +0.3 1,663,062 + -0.5 1,663,379 + BWI76_RS07840 0.36 -1.1 1,663,392 + BWI76_RS07840 0.38 +0.9 1,663,521 - BWI76_RS07840 0.54 -0.3 1,663,652 + BWI76_RS07840 0.70 -0.2 1,664,429 - BWI76_RS07845 0.42 -1.5 1,664,872 - BWI76_RS07845 0.87 -0.5 1,664,928 - -1.2 1,665,026 - -0.3 1,665,090 + -1.1 1,665,183 - +1.0 1,665,221 - -0.0 1,665,250 - +2.8 1,665,323 + BWI76_RS07850 0.14 -1.0 1,665,432 - BWI76_RS07850 0.23 -0.3 1,665,631 - BWI76_RS07850 0.39 -3.1 1,665,681 - BWI76_RS07850 0.43 +0.7 1,665,762 + BWI76_RS07850 0.49 -1.3 1,665,921 + BWI76_RS07850 0.62 +1.3
Or see this region's nucleotide sequence