Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07610 and BWI76_RS07615 are separated by 14 nucleotides BWI76_RS07615 and BWI76_RS07620 are separated by 10 nucleotides BWI76_RS07620 and BWI76_RS07625 overlap by 84 nucleotides BWI76_RS07625 and BWI76_RS07630 overlap by 4 nucleotides
BWI76_RS07610: BWI76_RS07610 - choline dehydrogenase, at 1,611,459 to 1,613,123
_RS07610
BWI76_RS07615: BWI76_RS07615 - betaine-aldehyde dehydrogenase, at 1,613,138 to 1,614,610
_RS07615
BWI76_RS07620: BWI76_RS07620 - transcriptional regulator BetI, at 1,614,621 to 1,615,214
_RS07620
BWI76_RS07625: BWI76_RS07625 - hypothetical protein, at 1,615,131 to 1,615,346
_RS07625
BWI76_RS07630: BWI76_RS07630 - high-affinity choline transporter BetT, at 1,615,343 to 1,617,376
_RS07630
Position (kb)
1613
1614
1615 Strain fitness (log2 ratio)
-2
-1
0
1 at 1612.209 kb on - strand, within BWI76_RS07610 at 1612.221 kb on - strand, within BWI76_RS07610 at 1612.354 kb on - strand, within BWI76_RS07610 at 1612.404 kb on - strand, within BWI76_RS07610 at 1612.576 kb on - strand, within BWI76_RS07610 at 1612.678 kb on - strand, within BWI76_RS07610 at 1612.678 kb on - strand, within BWI76_RS07610 at 1612.968 kb on + strand at 1613.568 kb on + strand, within BWI76_RS07615 at 1613.764 kb on - strand, within BWI76_RS07615 at 1613.769 kb on - strand, within BWI76_RS07615 at 1613.777 kb on - strand, within BWI76_RS07615 at 1614.049 kb on + strand, within BWI76_RS07615 at 1614.090 kb on - strand, within BWI76_RS07615 at 1614.458 kb on + strand, within BWI76_RS07615 at 1614.501 kb on + strand at 1614.501 kb on + strand at 1614.605 kb on + strand at 1614.702 kb on + strand, within BWI76_RS07620 at 1614.818 kb on + strand, within BWI76_RS07620 at 1615.001 kb on - strand, within BWI76_RS07620 at 1615.039 kb on + strand, within BWI76_RS07620 at 1615.467 kb on + strand at 1615.478 kb on + strand at 1615.552 kb on + strand, within BWI76_RS07630 at 1615.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 1,612,209 - BWI76_RS07610 0.45 -1.4 1,612,221 - BWI76_RS07610 0.46 -1.3 1,612,354 - BWI76_RS07610 0.54 +0.6 1,612,404 - BWI76_RS07610 0.57 -2.0 1,612,576 - BWI76_RS07610 0.67 +0.8 1,612,678 - BWI76_RS07610 0.73 -0.6 1,612,678 - BWI76_RS07610 0.73 -1.3 1,612,968 + +1.4 1,613,568 + BWI76_RS07615 0.29 +1.4 1,613,764 - BWI76_RS07615 0.42 -1.3 1,613,769 - BWI76_RS07615 0.43 -1.3 1,613,777 - BWI76_RS07615 0.43 -0.3 1,614,049 + BWI76_RS07615 0.62 +1.1 1,614,090 - BWI76_RS07615 0.65 -0.2 1,614,458 + BWI76_RS07615 0.90 -1.9 1,614,501 + +1.4 1,614,501 + +0.1 1,614,605 + -0.4 1,614,702 + BWI76_RS07620 0.14 -0.6 1,614,818 + BWI76_RS07620 0.33 +1.7 1,615,001 - BWI76_RS07620 0.64 -0.2 1,615,039 + BWI76_RS07620 0.70 +0.4 1,615,467 + +1.7 1,615,478 + -0.7 1,615,552 + BWI76_RS07630 0.10 -0.5 1,615,590 + -0.6
Or see this region's nucleotide sequence