Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07605

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07600 and BWI76_RS07605 are separated by 186 nucleotidesBWI76_RS07605 and BWI76_RS07610 are separated by 49 nucleotides BWI76_RS07600: BWI76_RS07600 - aspartate aminotransferase family protein, at 1,609,190 to 1,610,527 _RS07600 BWI76_RS07605: BWI76_RS07605 - N-acetyltransferase GCN5, at 1,610,714 to 1,611,409 _RS07605 BWI76_RS07610: BWI76_RS07610 - choline dehydrogenase, at 1,611,459 to 1,613,123 _RS07610 Position (kb) 1610 1611 1612Strain fitness (log2 ratio) -2 -1 0 1at 1609.779 kb on - strand, within BWI76_RS07600at 1610.576 kb on + strandat 1610.586 kb on + strandat 1610.697 kb on + strandat 1610.795 kb on + strand, within BWI76_RS07605at 1610.827 kb on + strand, within BWI76_RS07605at 1610.872 kb on - strand, within BWI76_RS07605at 1610.956 kb on + strand, within BWI76_RS07605at 1611.450 kb on + strandat 1611.458 kb on - strandat 1612.209 kb on - strand, within BWI76_RS07610at 1612.221 kb on - strand, within BWI76_RS07610at 1612.354 kb on - strand, within BWI76_RS07610at 1612.404 kb on - strand, within BWI76_RS07610

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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1,609,779 - BWI76_RS07600 0.44 +0.6
1,610,576 + +0.7
1,610,586 + +0.1
1,610,697 + +0.6
1,610,795 + BWI76_RS07605 0.12 -1.4
1,610,827 + BWI76_RS07605 0.16 -0.1
1,610,872 - BWI76_RS07605 0.23 -1.8
1,610,956 + BWI76_RS07605 0.35 -0.8
1,611,450 + -0.1
1,611,458 - +0.1
1,612,209 - BWI76_RS07610 0.45 -1.4
1,612,221 - BWI76_RS07610 0.46 -1.3
1,612,354 - BWI76_RS07610 0.54 +0.6
1,612,404 - BWI76_RS07610 0.57 -2.0

Or see this region's nucleotide sequence