Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS07045 and BWI76_RS07050 are separated by 9 nucleotides BWI76_RS07050 and BWI76_RS07055 are separated by 10 nucleotides BWI76_RS07055 and BWI76_RS07060 are separated by 9 nucleotides
BWI76_RS07045: BWI76_RS07045 - acyl-CoA synthetase FdrA, at 1,481,676 to 1,483,343
_RS07045
BWI76_RS07050: BWI76_RS07050 - putative cytoplasmic protein, at 1,483,353 to 1,484,612
_RS07050
BWI76_RS07055: BWI76_RS07055 - putative cytoplasmic protein, at 1,484,623 to 1,485,426
_RS07055
BWI76_RS07060: BWI76_RS07060 - carbamate kinase, at 1,485,436 to 1,486,329
_RS07060
Position (kb)
1483
1484
1485 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1482.590 kb on + strand, within BWI76_RS07045 at 1482.645 kb on + strand, within BWI76_RS07045 at 1482.734 kb on + strand, within BWI76_RS07045 at 1482.775 kb on - strand, within BWI76_RS07045 at 1482.853 kb on + strand, within BWI76_RS07045 at 1483.151 kb on + strand, within BWI76_RS07045 at 1483.159 kb on - strand, within BWI76_RS07045 at 1483.222 kb on - strand at 1483.222 kb on - strand at 1483.224 kb on + strand at 1483.381 kb on - strand at 1483.478 kb on + strand at 1483.517 kb on - strand, within BWI76_RS07050 at 1483.523 kb on + strand, within BWI76_RS07050 at 1483.523 kb on + strand, within BWI76_RS07050 at 1483.615 kb on + strand, within BWI76_RS07050 at 1483.623 kb on - strand, within BWI76_RS07050 at 1483.709 kb on + strand, within BWI76_RS07050 at 1483.889 kb on - strand, within BWI76_RS07050 at 1483.924 kb on - strand, within BWI76_RS07050 at 1483.930 kb on + strand, within BWI76_RS07050 at 1484.028 kb on - strand, within BWI76_RS07050 at 1484.054 kb on + strand, within BWI76_RS07050 at 1484.115 kb on + strand, within BWI76_RS07050 at 1484.194 kb on - strand, within BWI76_RS07050 at 1484.211 kb on - strand at 1484.225 kb on - strand, within BWI76_RS07050 at 1484.226 kb on - strand, within BWI76_RS07050 at 1484.247 kb on - strand, within BWI76_RS07050 at 1484.473 kb on + strand, within BWI76_RS07050 at 1484.606 kb on + strand at 1484.693 kb on + strand at 1484.753 kb on + strand, within BWI76_RS07055 at 1484.761 kb on - strand, within BWI76_RS07055 at 1484.877 kb on + strand, within BWI76_RS07055 at 1485.024 kb on - strand, within BWI76_RS07055 at 1485.050 kb on + strand, within BWI76_RS07055 at 1485.056 kb on + strand, within BWI76_RS07055 at 1485.238 kb on + strand, within BWI76_RS07055 at 1485.246 kb on - strand, within BWI76_RS07055 at 1485.246 kb on - strand, within BWI76_RS07055 at 1485.485 kb on + strand at 1485.605 kb on - strand, within BWI76_RS07060
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 1,482,590 + BWI76_RS07045 0.55 -0.6 1,482,645 + BWI76_RS07045 0.58 -0.6 1,482,734 + BWI76_RS07045 0.63 -1.2 1,482,775 - BWI76_RS07045 0.66 +0.5 1,482,853 + BWI76_RS07045 0.71 -0.1 1,483,151 + BWI76_RS07045 0.88 +2.2 1,483,159 - BWI76_RS07045 0.89 +0.4 1,483,222 - -0.5 1,483,222 - +0.3 1,483,224 + -0.1 1,483,381 - +0.1 1,483,478 + -0.6 1,483,517 - BWI76_RS07050 0.13 +0.8 1,483,523 + BWI76_RS07050 0.13 +1.5 1,483,523 + BWI76_RS07050 0.13 -0.6 1,483,615 + BWI76_RS07050 0.21 +0.4 1,483,623 - BWI76_RS07050 0.21 +0.2 1,483,709 + BWI76_RS07050 0.28 -0.4 1,483,889 - BWI76_RS07050 0.43 +0.8 1,483,924 - BWI76_RS07050 0.45 +0.7 1,483,930 + BWI76_RS07050 0.46 +0.0 1,484,028 - BWI76_RS07050 0.54 +0.4 1,484,054 + BWI76_RS07050 0.56 -0.9 1,484,115 + BWI76_RS07050 0.60 +2.5 1,484,194 - BWI76_RS07050 0.67 +1.7 1,484,211 - +2.4 1,484,225 - BWI76_RS07050 0.69 -0.0 1,484,226 - BWI76_RS07050 0.69 -0.8 1,484,247 - BWI76_RS07050 0.71 +0.8 1,484,473 + BWI76_RS07050 0.89 -1.3 1,484,606 + -0.2 1,484,693 + +0.5 1,484,753 + BWI76_RS07055 0.16 -0.2 1,484,761 - BWI76_RS07055 0.17 +0.3 1,484,877 + BWI76_RS07055 0.32 -1.3 1,485,024 - BWI76_RS07055 0.50 -1.2 1,485,050 + BWI76_RS07055 0.53 +0.1 1,485,056 + BWI76_RS07055 0.54 -0.9 1,485,238 + BWI76_RS07055 0.76 -1.7 1,485,246 - BWI76_RS07055 0.77 -0.7 1,485,246 - BWI76_RS07055 0.77 -2.0 1,485,485 + -0.3 1,485,605 - BWI76_RS07060 0.19 +0.1
Or see this region's nucleotide sequence