Experiment: Tetrahymena sp., Mixed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03780 and BWI76_RS03785 are separated by 46 nucleotides BWI76_RS03785 and BWI76_RS03790 are separated by 82 nucleotides BWI76_RS03790 and BWI76_RS03795 are separated by 178 nucleotides
BWI76_RS03780: BWI76_RS03780 - threonine transporter RhtB, at 782,781 to 783,422
_RS03780
BWI76_RS03785: BWI76_RS03785 - AraC family transcriptional regulator, at 783,469 to 784,284
_RS03785
BWI76_RS03790: BWI76_RS03790 - hypothetical protein, at 784,367 to 784,822
_RS03790
BWI76_RS03795: BWI76_RS03795 - putative aldehyde dehydrogenase, at 785,001 to 786,371
_RS03795
Position (kb) 784
785 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 783.396 kb on + strand at 783.411 kb on + strand at 783.440 kb on + strand at 783.441 kb on - strand at 783.444 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.450 kb on + strand at 783.452 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.458 kb on - strand at 783.546 kb on - strand at 783.658 kb on - strand, within BWI76_RS03785 at 783.701 kb on + strand, within BWI76_RS03785 at 783.709 kb on - strand, within BWI76_RS03785 at 783.711 kb on + strand, within BWI76_RS03785 at 783.929 kb on - strand, within BWI76_RS03785 at 784.028 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.050 kb on + strand, within BWI76_RS03785 at 784.057 kb on + strand, within BWI76_RS03785 at 784.058 kb on - strand, within BWI76_RS03785 at 784.065 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.119 kb on - strand, within BWI76_RS03785 at 784.212 kb on - strand at 784.301 kb on - strand at 784.301 kb on - strand at 784.334 kb on - strand at 784.427 kb on - strand, within BWI76_RS03790 at 784.457 kb on + strand, within BWI76_RS03790 at 784.504 kb on + strand, within BWI76_RS03790 at 784.512 kb on - strand, within BWI76_RS03790 at 784.692 kb on + strand, within BWI76_RS03790 at 784.725 kb on + strand, within BWI76_RS03790 at 784.939 kb on + strand at 784.959 kb on + strand at 784.997 kb on + strand at 785.090 kb on - strand at 785.151 kb on + strand, within BWI76_RS03795 at 785.159 kb on - strand, within BWI76_RS03795 at 785.326 kb on + strand, within BWI76_RS03795 at 785.357 kb on - strand, within BWI76_RS03795 at 785.468 kb on + strand, within BWI76_RS03795 at 785.610 kb on + strand, within BWI76_RS03795 at 785.610 kb on + strand, within BWI76_RS03795 at 785.618 kb on - strand, within BWI76_RS03795 at 785.664 kb on - strand, within BWI76_RS03795 at 785.720 kb on - strand, within BWI76_RS03795 at 785.778 kb on + strand, within BWI76_RS03795 at 785.791 kb on - strand, within BWI76_RS03795 at 785.811 kb on - strand, within BWI76_RS03795
Per-strain Table
Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1 remove 783,396 + +2.0 783,411 + +2.8 783,440 + +2.7 783,441 - +0.3 783,444 + -0.5 783,450 + -0.9 783,450 + +1.1 783,450 + -0.0 783,450 + -0.1 783,452 - +2.0 783,458 - -0.2 783,458 - -1.6 783,458 - +0.7 783,546 - +3.3 783,658 - BWI76_RS03785 0.23 -0.8 783,701 + BWI76_RS03785 0.28 +0.6 783,709 - BWI76_RS03785 0.29 +0.3 783,711 + BWI76_RS03785 0.30 +0.6 783,929 - BWI76_RS03785 0.56 -0.1 784,028 + BWI76_RS03785 0.69 -0.0 784,050 + BWI76_RS03785 0.71 -3.5 784,050 + BWI76_RS03785 0.71 +1.5 784,057 + BWI76_RS03785 0.72 -0.4 784,058 - BWI76_RS03785 0.72 -0.9 784,065 - BWI76_RS03785 0.73 -0.1 784,119 - BWI76_RS03785 0.80 +1.2 784,119 - BWI76_RS03785 0.80 -0.4 784,119 - BWI76_RS03785 0.80 -0.7 784,119 - BWI76_RS03785 0.80 +0.2 784,119 - BWI76_RS03785 0.80 -0.2 784,212 - -1.4 784,301 - -0.1 784,301 - +0.4 784,334 - +1.1 784,427 - BWI76_RS03790 0.13 +3.1 784,457 + BWI76_RS03790 0.20 -1.2 784,504 + BWI76_RS03790 0.30 +3.1 784,512 - BWI76_RS03790 0.32 -1.3 784,692 + BWI76_RS03790 0.71 +0.9 784,725 + BWI76_RS03790 0.79 -0.8 784,939 + +0.7 784,959 + +0.2 784,997 + +0.9 785,090 - +0.4 785,151 + BWI76_RS03795 0.11 -0.9 785,159 - BWI76_RS03795 0.12 -1.1 785,326 + BWI76_RS03795 0.24 +0.5 785,357 - BWI76_RS03795 0.26 +0.6 785,468 + BWI76_RS03795 0.34 -0.5 785,610 + BWI76_RS03795 0.44 +0.1 785,610 + BWI76_RS03795 0.44 -0.3 785,618 - BWI76_RS03795 0.45 -0.0 785,664 - BWI76_RS03795 0.48 -1.6 785,720 - BWI76_RS03795 0.52 +1.0 785,778 + BWI76_RS03795 0.57 +0.7 785,791 - BWI76_RS03795 0.58 +0.4 785,811 - BWI76_RS03795 0.59 -0.5
Or see this region's nucleotide sequence