Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS03325

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS03320 and BWI76_RS03325 are separated by 196 nucleotidesBWI76_RS03325 and BWI76_RS03330 overlap by 2 nucleotides BWI76_RS03320: BWI76_RS03320 - alcohol dehydrogenase, at 683,957 to 685,015 _RS03320 BWI76_RS03325: BWI76_RS03325 - LysR family transcriptional regulator, at 685,212 to 686,105 _RS03325 BWI76_RS03330: BWI76_RS03330 - putative hydrolase, at 686,104 to 687,396 _RS03330 Position (kb) 685 686 687Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 684.396 kb on + strandat 684.431 kb on + strand, within BWI76_RS03320at 684.461 kb on + strand, within BWI76_RS03320at 684.492 kb on + strand, within BWI76_RS03320at 684.510 kb on + strand, within BWI76_RS03320at 684.519 kb on - strand, within BWI76_RS03320at 684.546 kb on + strand, within BWI76_RS03320at 684.566 kb on - strand, within BWI76_RS03320at 684.589 kb on + strand, within BWI76_RS03320at 684.597 kb on + strand, within BWI76_RS03320at 684.606 kb on - strand, within BWI76_RS03320at 684.609 kb on + strand, within BWI76_RS03320at 684.708 kb on + strand, within BWI76_RS03320at 684.712 kb on + strand, within BWI76_RS03320at 684.752 kb on + strand, within BWI76_RS03320at 684.827 kb on + strand, within BWI76_RS03320at 684.833 kb on - strand, within BWI76_RS03320at 684.960 kb on - strandat 684.963 kb on + strandat 684.986 kb on + strandat 685.040 kb on - strandat 685.040 kb on - strandat 685.056 kb on + strandat 685.056 kb on + strandat 685.064 kb on + strandat 685.064 kb on - strandat 685.064 kb on - strandat 685.097 kb on - strandat 685.161 kb on - strandat 685.170 kb on + strandat 685.178 kb on - strandat 685.187 kb on + strandat 685.222 kb on + strandat 685.225 kb on + strandat 685.225 kb on + strandat 685.232 kb on + strandat 685.233 kb on - strandat 685.233 kb on - strandat 685.243 kb on + strandat 685.243 kb on - strandat 685.249 kb on - strandat 685.289 kb on + strandat 685.305 kb on + strand, within BWI76_RS03325at 685.305 kb on + strand, within BWI76_RS03325at 685.305 kb on + strand, within BWI76_RS03325at 685.313 kb on - strand, within BWI76_RS03325at 685.320 kb on + strandat 685.336 kb on - strand, within BWI76_RS03325at 685.354 kb on + strand, within BWI76_RS03325at 685.363 kb on + strand, within BWI76_RS03325at 685.371 kb on - strand, within BWI76_RS03325at 685.371 kb on - strand, within BWI76_RS03325at 685.373 kb on + strand, within BWI76_RS03325at 685.420 kb on + strand, within BWI76_RS03325at 685.430 kb on + strand, within BWI76_RS03325at 685.430 kb on + strand, within BWI76_RS03325at 685.438 kb on - strand, within BWI76_RS03325at 685.465 kb on + strand, within BWI76_RS03325at 685.472 kb on + strand, within BWI76_RS03325at 685.481 kb on + strand, within BWI76_RS03325at 685.488 kb on + strand, within BWI76_RS03325at 685.489 kb on - strand, within BWI76_RS03325at 685.489 kb on - strand, within BWI76_RS03325at 685.586 kb on + strand, within BWI76_RS03325at 685.690 kb on + strand, within BWI76_RS03325at 685.952 kb on + strand, within BWI76_RS03325at 685.952 kb on + strand, within BWI76_RS03325at 685.952 kb on + strand, within BWI76_RS03325at 685.960 kb on - strand, within BWI76_RS03325at 685.960 kb on - strand, within BWI76_RS03325at 685.960 kb on - strand, within BWI76_RS03325at 685.960 kb on - strand, within BWI76_RS03325at 686.116 kb on - strandat 686.118 kb on + strandat 686.118 kb on + strandat 686.118 kb on + strandat 686.126 kb on - strandat 686.147 kb on + strandat 686.175 kb on + strandat 686.248 kb on - strand, within BWI76_RS03330at 686.248 kb on - strand, within BWI76_RS03330at 686.268 kb on - strand, within BWI76_RS03330at 686.335 kb on + strand, within BWI76_RS03330at 686.343 kb on - strand, within BWI76_RS03330at 686.343 kb on - strand, within BWI76_RS03330at 686.378 kb on - strand, within BWI76_RS03330at 686.397 kb on + strand, within BWI76_RS03330at 686.543 kb on + strand, within BWI76_RS03330at 686.589 kb on + strand, within BWI76_RS03330at 686.589 kb on + strand, within BWI76_RS03330at 686.613 kb on - strand, within BWI76_RS03330at 686.615 kb on + strand, within BWI76_RS03330at 686.615 kb on + strand, within BWI76_RS03330at 686.615 kb on + strand, within BWI76_RS03330at 686.623 kb on - strand, within BWI76_RS03330at 686.623 kb on - strand, within BWI76_RS03330at 686.623 kb on - strand, within BWI76_RS03330at 686.634 kb on - strand, within BWI76_RS03330at 686.685 kb on + strand, within BWI76_RS03330at 686.708 kb on + strand, within BWI76_RS03330at 686.708 kb on + strand, within BWI76_RS03330at 686.716 kb on - strand, within BWI76_RS03330at 686.716 kb on - strand, within BWI76_RS03330at 686.731 kb on + strand, within BWI76_RS03330at 686.827 kb on - strand, within BWI76_RS03330at 686.851 kb on + strand, within BWI76_RS03330at 686.861 kb on + strand, within BWI76_RS03330at 686.869 kb on - strand, within BWI76_RS03330at 686.869 kb on - strand, within BWI76_RS03330at 686.923 kb on - strand, within BWI76_RS03330at 686.928 kb on - strand, within BWI76_RS03330at 686.963 kb on + strand, within BWI76_RS03330at 686.963 kb on + strand, within BWI76_RS03330at 686.963 kb on + strand, within BWI76_RS03330at 686.966 kb on + strand, within BWI76_RS03330at 686.971 kb on - strand, within BWI76_RS03330at 687.022 kb on + strand, within BWI76_RS03330at 687.038 kb on - strand, within BWI76_RS03330

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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684,396 + +0.6
684,431 + BWI76_RS03320 0.45 -1.1
684,461 + BWI76_RS03320 0.48 +0.8
684,492 + BWI76_RS03320 0.51 -0.9
684,510 + BWI76_RS03320 0.52 -1.0
684,519 - BWI76_RS03320 0.53 -1.1
684,546 + BWI76_RS03320 0.56 -1.3
684,566 - BWI76_RS03320 0.58 +1.2
684,589 + BWI76_RS03320 0.60 -0.3
684,597 + BWI76_RS03320 0.60 +2.6
684,606 - BWI76_RS03320 0.61 -0.1
684,609 + BWI76_RS03320 0.62 +0.5
684,708 + BWI76_RS03320 0.71 -1.2
684,712 + BWI76_RS03320 0.71 -0.8
684,752 + BWI76_RS03320 0.75 +0.5
684,827 + BWI76_RS03320 0.82 -1.9
684,833 - BWI76_RS03320 0.83 -0.1
684,960 - -2.4
684,963 + +0.5
684,986 + +0.1
685,040 - -0.9
685,040 - -1.2
685,056 + -0.4
685,056 + +0.6
685,064 + -0.9
685,064 - -0.5
685,064 - +0.2
685,097 - +1.2
685,161 - +0.2
685,170 + -2.1
685,178 - -2.3
685,187 + -1.6
685,222 + +0.2
685,225 + +0.4
685,225 + -0.7
685,232 + +0.9
685,233 - -1.3
685,233 - -0.4
685,243 + +0.4
685,243 - +0.2
685,249 - -0.4
685,289 + -0.6
685,305 + BWI76_RS03325 0.10 -0.1
685,305 + BWI76_RS03325 0.10 -2.4
685,305 + BWI76_RS03325 0.10 -1.6
685,313 - BWI76_RS03325 0.11 +1.7
685,320 + -0.8
685,336 - BWI76_RS03325 0.14 +0.1
685,354 + BWI76_RS03325 0.16 -0.2
685,363 + BWI76_RS03325 0.17 -0.2
685,371 - BWI76_RS03325 0.18 -0.6
685,371 - BWI76_RS03325 0.18 -1.6
685,373 + BWI76_RS03325 0.18 -1.6
685,420 + BWI76_RS03325 0.23 -1.9
685,430 + BWI76_RS03325 0.24 +1.0
685,430 + BWI76_RS03325 0.24 -0.6
685,438 - BWI76_RS03325 0.25 -0.6
685,465 + BWI76_RS03325 0.28 -1.1
685,472 + BWI76_RS03325 0.29 +0.0
685,481 + BWI76_RS03325 0.30 -0.7
685,488 + BWI76_RS03325 0.31 -0.7
685,489 - BWI76_RS03325 0.31 -1.0
685,489 - BWI76_RS03325 0.31 -2.6
685,586 + BWI76_RS03325 0.42 +0.4
685,690 + BWI76_RS03325 0.53 -3.9
685,952 + BWI76_RS03325 0.83 -0.6
685,952 + BWI76_RS03325 0.83 -0.8
685,952 + BWI76_RS03325 0.83 -2.0
685,960 - BWI76_RS03325 0.84 +0.4
685,960 - BWI76_RS03325 0.84 -0.9
685,960 - BWI76_RS03325 0.84 +1.3
685,960 - BWI76_RS03325 0.84 +1.9
686,116 - +0.1
686,118 + +1.2
686,118 + -1.1
686,118 + -0.3
686,126 - -1.5
686,147 + +0.3
686,175 + -0.7
686,248 - BWI76_RS03330 0.11 -0.9
686,248 - BWI76_RS03330 0.11 -1.7
686,268 - BWI76_RS03330 0.13 +0.3
686,335 + BWI76_RS03330 0.18 -0.2
686,343 - BWI76_RS03330 0.18 -0.9
686,343 - BWI76_RS03330 0.18 -0.5
686,378 - BWI76_RS03330 0.21 -0.1
686,397 + BWI76_RS03330 0.23 +0.0
686,543 + BWI76_RS03330 0.34 -2.6
686,589 + BWI76_RS03330 0.38 -1.3
686,589 + BWI76_RS03330 0.38 -0.6
686,613 - BWI76_RS03330 0.39 +0.8
686,615 + BWI76_RS03330 0.40 -0.7
686,615 + BWI76_RS03330 0.40 -1.0
686,615 + BWI76_RS03330 0.40 -0.4
686,623 - BWI76_RS03330 0.40 +0.3
686,623 - BWI76_RS03330 0.40 +0.1
686,623 - BWI76_RS03330 0.40 +0.0
686,634 - BWI76_RS03330 0.41 -1.9
686,685 + BWI76_RS03330 0.45 +0.2
686,708 + BWI76_RS03330 0.47 -0.4
686,708 + BWI76_RS03330 0.47 -0.1
686,716 - BWI76_RS03330 0.47 -0.9
686,716 - BWI76_RS03330 0.47 -1.1
686,731 + BWI76_RS03330 0.48 -1.1
686,827 - BWI76_RS03330 0.56 +0.9
686,851 + BWI76_RS03330 0.58 +0.6
686,861 + BWI76_RS03330 0.59 -0.6
686,869 - BWI76_RS03330 0.59 -0.0
686,869 - BWI76_RS03330 0.59 -1.2
686,923 - BWI76_RS03330 0.63 +0.3
686,928 - BWI76_RS03330 0.64 -2.5
686,963 + BWI76_RS03330 0.66 -0.1
686,963 + BWI76_RS03330 0.66 +0.1
686,963 + BWI76_RS03330 0.66 -0.3
686,966 + BWI76_RS03330 0.67 +1.1
686,971 - BWI76_RS03330 0.67 -0.0
687,022 + BWI76_RS03330 0.71 +0.9
687,038 - BWI76_RS03330 0.72 +0.6

Or see this region's nucleotide sequence