Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02965

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02960 and BWI76_RS02965 are separated by 52 nucleotidesBWI76_RS02965 and BWI76_RS02970 are separated by 131 nucleotides BWI76_RS02960: BWI76_RS02960 - glucohydrolase, at 605,652 to 607,307 _RS02960 BWI76_RS02965: BWI76_RS02965 - PTS trehalose transporter subunit IIBC, at 607,360 to 608,778 _RS02965 BWI76_RS02970: BWI76_RS02970 - trehalose operon repressor, at 608,910 to 609,857 _RS02970 Position (kb) 607 608 609Strain fitness (log2 ratio) -3 -2 -1 0 1at 607.490 kb on + strandat 607.733 kb on + strand, within BWI76_RS02965at 607.813 kb on + strand, within BWI76_RS02965at 607.883 kb on - strandat 607.907 kb on + strand, within BWI76_RS02965at 607.912 kb on + strand, within BWI76_RS02965at 607.915 kb on - strand, within BWI76_RS02965at 608.178 kb on + strand, within BWI76_RS02965at 608.408 kb on + strand, within BWI76_RS02965at 608.534 kb on + strand, within BWI76_RS02965at 608.576 kb on - strand, within BWI76_RS02965at 608.585 kb on + strand, within BWI76_RS02965at 608.585 kb on + strand, within BWI76_RS02965at 608.698 kb on - strandat 608.792 kb on - strandat 608.945 kb on + strandat 609.101 kb on + strand, within BWI76_RS02970at 609.396 kb on - strand, within BWI76_RS02970at 609.488 kb on + strand, within BWI76_RS02970at 609.617 kb on - strand, within BWI76_RS02970at 609.668 kb on - strand, within BWI76_RS02970

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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607,490 + -1.2
607,733 + BWI76_RS02965 0.26 -1.8
607,813 + BWI76_RS02965 0.32 -0.3
607,883 - +1.2
607,907 + BWI76_RS02965 0.39 -1.7
607,912 + BWI76_RS02965 0.39 +1.5
607,915 - BWI76_RS02965 0.39 -0.9
608,178 + BWI76_RS02965 0.58 -1.1
608,408 + BWI76_RS02965 0.74 -2.8
608,534 + BWI76_RS02965 0.83 -0.7
608,576 - BWI76_RS02965 0.86 -1.0
608,585 + BWI76_RS02965 0.86 -1.5
608,585 + BWI76_RS02965 0.86 -1.7
608,698 - +0.2
608,792 - -0.8
608,945 + -1.0
609,101 + BWI76_RS02970 0.20 +0.1
609,396 - BWI76_RS02970 0.51 -0.1
609,488 + BWI76_RS02970 0.61 -0.2
609,617 - BWI76_RS02970 0.75 +0.1
609,668 - BWI76_RS02970 0.80 +0.1

Or see this region's nucleotide sequence