Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS02945

Experiment: Tetrahymena sp., Mixed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS02940 and BWI76_RS02945 are separated by 260 nucleotidesBWI76_RS02945 and BWI76_RS02950 are separated by 79 nucleotides BWI76_RS02940: BWI76_RS02940 - RpiR family transcriptional regulator, at 601,371 to 602,114 _RS02940 BWI76_RS02945: BWI76_RS02945 - PTS sugar transporter subunit IIB, at 602,375 to 602,683 _RS02945 BWI76_RS02950: BWI76_RS02950 - 6-phospho-beta-glucosidase, at 602,763 to 604,070 _RS02950 Position (kb) 602 603Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 601.395 kb on - strandat 601.442 kb on - strandat 601.446 kb on - strand, within BWI76_RS02940at 601.535 kb on + strand, within BWI76_RS02940at 601.699 kb on + strand, within BWI76_RS02940at 601.887 kb on - strand, within BWI76_RS02940at 602.079 kb on + strandat 602.344 kb on - strandat 602.382 kb on + strandat 602.390 kb on - strandat 602.575 kb on + strandat 602.669 kb on + strandat 602.731 kb on + strandat 602.811 kb on - strandat 602.811 kb on - strandat 602.827 kb on + strandat 602.827 kb on + strandat 602.835 kb on - strandat 602.927 kb on + strand, within BWI76_RS02950at 603.340 kb on + strand, within BWI76_RS02950at 603.402 kb on + strand, within BWI76_RS02950at 603.673 kb on + strand, within BWI76_RS02950

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetrahymena sp., Mixed culture-1
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601,395 - +0.4
601,442 - +0.1
601,446 - BWI76_RS02940 0.10 -0.8
601,535 + BWI76_RS02940 0.22 -1.3
601,699 + BWI76_RS02940 0.44 +2.1
601,887 - BWI76_RS02940 0.69 -0.4
602,079 + +0.5
602,344 - +3.3
602,382 + -1.9
602,390 - -0.0
602,575 + +1.2
602,669 + +1.6
602,731 + +0.2
602,811 - -0.6
602,811 - -0.3
602,827 + -1.5
602,827 + +0.9
602,835 - +0.3
602,927 + BWI76_RS02950 0.13 +0.7
603,340 + BWI76_RS02950 0.44 +0.2
603,402 + BWI76_RS02950 0.49 +0.8
603,673 + BWI76_RS02950 0.70 +5.0

Or see this region's nucleotide sequence