Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21400

Experiment: propionate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	propionate (C)
4,810,513	+		PFLU_RS21395	0.21	-2.3
4,810,514	-		PFLU_RS21395	0.21	-0.7
4,810,514	-		PFLU_RS21395	0.21	-2.6
4,810,595	-		PFLU_RS21395	0.29	+1.1
4,810,595	-		PFLU_RS21395	0.29	-1.5
4,810,709	-		PFLU_RS21395	0.40	-0.4
4,810,759	+		PFLU_RS21395	0.45	-1.9
4,810,759	+		PFLU_RS21395	0.45	+0.4
4,810,792	+		PFLU_RS21395	0.49	-2.5
4,810,792	+		PFLU_RS21395	0.49	-1.2
4,810,793	-		PFLU_RS21395	0.49	-2.0
4,810,860	+		PFLU_RS21395	0.56	-3.2
4,810,860	+		PFLU_RS21395	0.56	-2.2
4,810,860	+		PFLU_RS21395	0.56	-2.3
4,810,860	+		PFLU_RS21395	0.56	-1.2
4,810,861	-		PFLU_RS21395	0.56	-2.7
4,810,861	-		PFLU_RS21395	0.56	-0.8
4,810,974	+		PFLU_RS21395	0.67	+0.2
4,810,974	+		PFLU_RS21395	0.67	-1.0
4,810,974	+		PFLU_RS21395	0.67	-0.7
4,810,975	-		PFLU_RS21395	0.67	-1.2
4,810,975	-		PFLU_RS21395	0.67	+0.5
4,811,226	+				+1.6
4,811,279	+				-0.3
4,811,299	+				-0.7
4,811,299	+				+0.8
4,811,299	+				-1.3
4,811,299	+				-0.2
4,811,300	-				-0.2
4,811,300	-				+0.4
4,811,316	-				+0.4
4,811,444	+				+1.6
4,811,444	+				+1.2
4,811,444	+				+1.2
4,811,683	+		PFLU_RS21400	0.38	-0.0
4,811,683	+		PFLU_RS21400	0.38	-2.4
4,811,683	+		PFLU_RS21400	0.38	-0.8
4,811,683	+		PFLU_RS21400	0.38	-0.9
4,811,683	+		PFLU_RS21400	0.38	-1.8
4,811,684	-		PFLU_RS21400	0.39	-0.6
4,811,684	-		PFLU_RS21400	0.39	-0.7
4,811,796	+		PFLU_RS21400	0.61	-2.5
4,811,842	+		PFLU_RS21400	0.70	+0.9
4,811,842	+		PFLU_RS21400	0.70	-2.0
4,811,842	+		PFLU_RS21400	0.70	+0.2
4,811,842	+		PFLU_RS21400	0.70	-0.4
4,811,842	+		PFLU_RS21400	0.70	+1.8
4,811,842	+		PFLU_RS21400	0.70	-0.8
4,811,842	+		PFLU_RS21400	0.70	-0.6
4,811,842	+		PFLU_RS21400	0.70	-3.3
4,811,842	+		PFLU_RS21400	0.70	-0.8
4,811,843	-		PFLU_RS21400	0.70	-1.9
4,811,843	-		PFLU_RS21400	0.70	-0.5
4,811,843	-		PFLU_RS21400	0.70	+0.9
4,811,843	-		PFLU_RS21400	0.70	+0.2
4,811,843	-		PFLU_RS21400	0.70	-1.3
4,811,843	-		PFLU_RS21400	0.70	-0.2
4,811,843	-		PFLU_RS21400	0.70	+0.5
4,811,843	-		PFLU_RS21400	0.70	-1.4
4,811,843	-		PFLU_RS21400	0.70	+2.1
4,811,843	-		PFLU_RS21400	0.70	-2.7
4,811,843	-		PFLU_RS21400	0.70	-2.6
4,811,843	-		PFLU_RS21400	0.70	-1.0
4,811,843	-		PFLU_RS21400	0.70	-2.3
4,811,846	+		PFLU_RS21400	0.71	-0.6
4,811,846	+		PFLU_RS21400	0.71	+0.2
4,811,846	+		PFLU_RS21400	0.71	-2.5
4,811,846	+		PFLU_RS21400	0.71	-0.8
4,811,846	+		PFLU_RS21400	0.71	-1.2
4,811,847	-		PFLU_RS21400	0.71	+0.4
4,811,932	+		PFLU_RS21400	0.88	+0.4
4,811,932	+		PFLU_RS21400	0.88	+1.9
4,811,933	-		PFLU_RS21400	0.88	+0.3
4,811,933	-		PFLU_RS21400	0.88	-2.2
4,811,933	-		PFLU_RS21400	0.88	-0.2
4,811,990	+				+1.8
4,811,990	+				-0.6
4,811,990	+				-1.9
4,811,990	+				-2.2
4,811,990	+				+0.5
4,811,990	+				+0.5
4,811,991	-				-1.9
4,811,991	-				+0.5
4,811,991	-				+1.2
4,812,036	+				-1.5
4,812,036	+				+0.2
4,812,037	-				+0.9
4,812,037	-				+0.1
4,812,037	-				-1.2
4,812,131	+				-1.0
4,812,132	-				-0.4
4,812,132	-				+1.1
4,812,132	-				-1.7
4,812,132	-				-0.2
4,812,157	+				-0.9
4,812,157	+				+1.3
4,812,158	-				+0.0
4,812,217	+		PFLU_RS21405	0.13	+0.4
4,812,217	+		PFLU_RS21405	0.13	+1.6
4,812,217	+		PFLU_RS21405	0.13	+0.8
4,812,217	+		PFLU_RS21405	0.13	-0.2
4,812,218	-		PFLU_RS21405	0.13	-0.8
4,812,221	+		PFLU_RS21405	0.14	+2.1
4,812,222	-		PFLU_RS21405	0.14	-2.1
4,812,222	-		PFLU_RS21405	0.14	+0.9
4,812,222	-		PFLU_RS21405	0.14	-1.5
4,812,222	-		PFLU_RS21405	0.14	+0.2
4,812,222	-		PFLU_RS21405	0.14	-0.9
4,812,222	-		PFLU_RS21405	0.14	-0.5
4,812,222	-		PFLU_RS21405	0.14	-1.9
4,812,222	-		PFLU_RS21405	0.14	-0.4
4,812,222	-		PFLU_RS21405	0.14	+0.2
4,812,222	-		PFLU_RS21405	0.14	+1.8
4,812,222	-		PFLU_RS21405	0.14	-1.9
4,812,293	+		PFLU_RS21405	0.19	-0.1
4,812,293	+		PFLU_RS21405	0.19	-0.2
4,812,293	+		PFLU_RS21405	0.19	+2.1
4,812,293	+		PFLU_RS21405	0.19	+1.6
4,812,294	-		PFLU_RS21405	0.19	-1.0
4,812,294	-		PFLU_RS21405	0.19	+0.8
4,812,294	-		PFLU_RS21405	0.19	+1.0
4,812,294	-		PFLU_RS21405	0.19	-0.2
4,812,294	-		PFLU_RS21405	0.19	+0.2
4,812,294	-		PFLU_RS21405	0.19	-0.4
4,812,294	-		PFLU_RS21405	0.19	-0.3
4,812,294	-		PFLU_RS21405	0.19	-1.8
4,812,294	-		PFLU_RS21405	0.19	-0.2
4,812,315	+		PFLU_RS21405	0.21	-1.2
4,812,338	+		PFLU_RS21405	0.23	-1.7
4,812,338	+		PFLU_RS21405	0.23	-2.0
4,812,339	-		PFLU_RS21405	0.23	+1.1
4,812,339	-		PFLU_RS21405	0.23	-0.5
4,812,339	-		PFLU_RS21405	0.23	-0.7
4,812,356	+		PFLU_RS21405	0.24	-0.8
4,812,356	+		PFLU_RS21405	0.24	-0.3
4,812,356	+		PFLU_RS21405	0.24	+1.0
4,812,356	+		PFLU_RS21405	0.24	-1.7
4,812,357	-		PFLU_RS21405	0.24	+0.1
4,812,357	-		PFLU_RS21405	0.24	-0.8
4,812,357	-		PFLU_RS21405	0.24	-1.4
4,812,357	-		PFLU_RS21405	0.24	+1.0
4,812,357	-		PFLU_RS21405	0.24	-1.0
4,812,357	-		PFLU_RS21405	0.24	-0.4
4,812,357	-		PFLU_RS21405	0.24	-0.1
4,812,357	-		PFLU_RS21405	0.24	+0.9
4,812,399	+		PFLU_RS21405	0.27	+0.6
4,812,399	+		PFLU_RS21405	0.27	-0.2
4,812,399	+		PFLU_RS21405	0.27	-0.8
4,812,399	+		PFLU_RS21405	0.27	+3.5
4,812,399	+		PFLU_RS21405	0.27	+0.3
4,812,399	+		PFLU_RS21405	0.27	-1.7
4,812,400	-		PFLU_RS21405	0.27	+0.2
4,812,400	-		PFLU_RS21405	0.27	+2.3
4,812,400	-		PFLU_RS21405	0.27	-1.7
4,812,400	-		PFLU_RS21405	0.27	+0.2
4,812,440	+		PFLU_RS21405	0.30	+1.0
4,812,440	+		PFLU_RS21405	0.30	+1.0
4,812,440	+		PFLU_RS21405	0.30	-0.8
4,812,440	+		PFLU_RS21405	0.30	+0.0
4,812,440	+		PFLU_RS21405	0.30	+0.3
4,812,441	-		PFLU_RS21405	0.30	-0.7
4,812,441	-		PFLU_RS21405	0.30	+1.2
4,812,560	+		PFLU_RS21405	0.40	+0.0
4,812,561	-		PFLU_RS21405	0.40	-1.7
4,812,719	+		PFLU_RS21405	0.52	-2.0
4,812,719	+		PFLU_RS21405	0.52	-1.9
4,812,719	+		PFLU_RS21405	0.52	+0.3
4,812,719	+		PFLU_RS21405	0.52	+0.8
4,812,719	+		PFLU_RS21405	0.52	-2.2
4,812,719	+		PFLU_RS21405	0.52	-0.1
4,812,719	+		PFLU_RS21405	0.52	+0.5
4,812,719	+		PFLU_RS21405	0.52	-1.5
4,812,719	+		PFLU_RS21405	0.52	-1.2
4,812,719	+		PFLU_RS21405	0.52	-0.7
4,812,719	+		PFLU_RS21405	0.52	-1.8
4,812,719	+		PFLU_RS21405	0.52	+0.8
4,812,719	+		PFLU_RS21405	0.52	+1.0
4,812,720	-		PFLU_RS21405	0.52	-3.3
4,812,720	-		PFLU_RS21405	0.52	+0.2
4,812,720	-		PFLU_RS21405	0.52	+0.8
4,812,720	-		PFLU_RS21405	0.52	-1.8
4,812,720	-		PFLU_RS21405	0.52	-3.3
4,812,720	-		PFLU_RS21405	0.52	-0.4
4,812,720	-		PFLU_RS21405	0.52	-2.0
4,812,720	-		PFLU_RS21405	0.52	+0.5
4,812,720	-		PFLU_RS21405	0.52	+1.8
4,812,720	-		PFLU_RS21405	0.52	-0.9
4,812,720	-		PFLU_RS21405	0.52	+0.6
4,812,720	-		PFLU_RS21405	0.52	+2.2
4,812,720	-		PFLU_RS21405	0.52	-0.4
4,812,774	-		PFLU_RS21405	0.56	-3.3
4,812,774	-		PFLU_RS21405	0.56	-1.6
4,812,774	-		PFLU_RS21405	0.56	-1.0
4,812,785	+		PFLU_RS21405	0.57	-2.3
4,812,785	+		PFLU_RS21405	0.57	-0.3
4,812,785	+		PFLU_RS21405	0.57	-2.4
4,812,785	+		PFLU_RS21405	0.57	-0.5
4,812,785	+		PFLU_RS21405	0.57	-2.0
4,812,785	+		PFLU_RS21405	0.57	-0.1
4,812,785	+		PFLU_RS21405	0.57	+0.8
4,812,785	+		PFLU_RS21405	0.57	+2.0
4,812,785	+		PFLU_RS21405	0.57	+0.8
4,812,786	-		PFLU_RS21405	0.57	-0.2
4,812,786	-		PFLU_RS21405	0.57	-2.5
4,812,786	-		PFLU_RS21405	0.57	-0.5
4,812,808	+		PFLU_RS21405	0.59	-2.0
4,812,839	+		PFLU_RS21405	0.61	+0.2
4,812,839	+		PFLU_RS21405	0.61	-1.2
4,812,839	+		PFLU_RS21405	0.61	+1.0
4,812,839	+		PFLU_RS21405	0.61	+0.3
4,812,839	+		PFLU_RS21405	0.61	-1.5
4,812,839	+		PFLU_RS21405	0.61	-1.7
4,812,840	-		PFLU_RS21405	0.61	+1.9
4,812,840	-		PFLU_RS21405	0.61	-0.1
4,812,840	-		PFLU_RS21405	0.61	-0.4
4,812,856	+		PFLU_RS21405	0.62	-1.2
4,812,856	+		PFLU_RS21405	0.62	+0.2
4,812,856	+		PFLU_RS21405	0.62	-2.5
4,812,857	-		PFLU_RS21405	0.62	-2.7
4,812,869	+		PFLU_RS21405	0.63	+3.4
4,812,869	+		PFLU_RS21405	0.63	+0.2
4,812,870	-		PFLU_RS21405	0.63	-0.8
4,812,917	+		PFLU_RS21405	0.67	+0.8
4,812,917	+		PFLU_RS21405	0.67	-1.9
4,812,917	+		PFLU_RS21405	0.67	-2.5
4,812,918	-		PFLU_RS21405	0.67	-2.6
4,812,932	-		PFLU_RS21405	0.68	-0.3
4,812,983	+		PFLU_RS21405	0.72	-2.1
4,812,984	-		PFLU_RS21405	0.72	-0.8