Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS12640

Experiment: propionate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	propionate (C)
2,854,173	-				+1.1
2,854,173	-				+1.4
2,854,289	+				+2.8
2,854,289	+				+0.9
2,854,289	+				+0.6
2,854,290	-				+0.8
2,854,290	-				-2.1
2,854,290	-				+0.7
2,854,290	-				-0.4
2,854,290	-				+0.6
2,854,290	-				+1.3
2,854,290	-				-3.0
2,854,303	-				+1.7
2,854,317	+				-1.0
2,854,317	+				+0.8
2,854,317	+				-1.4
2,854,317	+				-1.0
2,854,317	+				+1.8
2,854,317	+				-1.0
2,854,317	+				+2.0
2,854,317	+				+1.4
2,854,317	+				-0.8
2,854,317	+				-1.2
2,854,317	+				-1.0
2,854,317	+				-1.0
2,854,317	+				+1.4
2,854,317	+				-2.7
2,854,317	+				+0.4
2,854,317	+				-1.8
2,854,317	+				-0.2
2,854,318	-				+0.6
2,854,318	-				-0.4
2,854,318	-				+0.8
2,854,318	-				+1.2
2,854,318	-				-0.9
2,854,318	-				-0.5
2,854,318	-				+0.0
2,854,318	-				+1.7
2,854,318	-				+2.2
2,854,318	-				-0.3
2,854,318	-				+0.6
2,854,318	-				-0.9
2,854,318	-				+0.1
2,854,318	-				+0.7
2,854,318	-				-0.1
2,854,318	-				+1.2
2,854,319	+				-0.6
2,854,319	+				+0.8
2,854,319	+				-1.8
2,854,319	+				+1.9
2,854,319	+				-0.2
2,854,319	+				+1.4
2,854,319	+				-1.3
2,854,319	+				+0.7
2,854,319	+				+1.9
2,854,320	-				-1.8
2,854,320	-				-0.5
2,854,320	-				+2.2
2,854,320	-				+0.5
2,854,321	+				+0.4
2,854,321	+				-1.0
2,854,321	+				+0.4
2,854,321	+				-0.1
2,854,321	+				-0.2
2,854,321	+				-1.0
2,854,321	+				-0.4
2,854,321	+				-1.8
2,854,321	+				+1.4
2,854,321	+				-1.0
2,854,321	+				+0.2
2,854,322	-				+1.4
2,854,322	-				+0.4
2,854,322	-				+0.4
2,854,322	-				-1.2
2,854,322	-				+0.4
2,854,322	-				-2.3
2,854,322	-				-0.2
2,854,322	-				-2.3
2,854,322	-				-0.2
2,854,322	-				+1.9
2,854,322	-				+0.9
2,854,322	-				-1.8
2,854,322	-				-0.2
2,854,322	-				-0.4
2,854,322	-				+1.8
2,854,322	-				+0.6
2,854,322	-				-0.6
2,854,322	-				+2.8
2,854,322	-				+0.4
2,854,322	-				-0.5
2,854,347	+				+0.2
2,854,347	+				+0.8
2,854,347	+				+1.8
2,854,347	+				+2.9
2,854,347	+				-2.1
2,854,347	+				+0.8
2,854,349	+				+0.9
2,854,349	+				-2.0
2,854,350	-				+0.7
2,854,350	-				-0.6
2,854,350	-				+1.7
2,854,350	-				+0.7
2,854,401	+				+0.0
2,854,453	+				+0.4
2,854,470	+				+0.9
2,854,547	-				+2.0
2,854,623	+				-0.4
2,854,623	+				-1.2
2,854,623	+				+0.6
2,854,623	+				+0.9
2,854,623	+				-1.8
2,854,623	+				+0.0
2,854,623	+				+0.4
2,854,623	+				+0.4
2,854,623	+				-1.4
2,854,623	+				+1.1
2,854,624	-				+0.1
2,854,624	-				-0.1
2,854,624	-				+1.6
2,854,624	-				-0.2
2,854,624	-				-1.6
2,854,624	-				-0.6
2,854,624	-				+3.7
2,854,624	-				-0.6
2,854,889	+		PFLU_RS12635	0.75	+1.4
2,854,929	+		PFLU_RS12635	0.85	+0.9
2,854,929	+		PFLU_RS12635	0.85	-0.1
2,854,929	+		PFLU_RS12635	0.85	-1.5
2,855,040	+				-0.1
2,855,051	+				-1.0
2,855,052	-				-1.8
2,855,052	-				-2.5
2,855,052	-				-1.3
2,855,052	-				-2.0
2,855,069	+				-2.1
2,855,261	+				-2.2
2,855,262	-				+0.4
2,855,262	-				-0.0
2,855,262	-				+1.2
2,855,262	-				-0.1
2,855,262	-				-1.2
2,855,296	+				-0.5
2,855,296	+				+0.5
2,855,296	+				-1.6
2,855,297	-				+0.1
2,855,297	-				+2.0
2,855,361	+		PFLU_RS12640	0.12	-1.2
2,855,459	-		PFLU_RS12640	0.18	+0.7
2,855,925	+		PFLU_RS12640	0.47	+0.0
2,855,926	-		PFLU_RS12640	0.47	+0.1
2,855,939	+		PFLU_RS12640	0.48	+1.4
2,855,939	+		PFLU_RS12640	0.48	+1.4
2,855,939	+		PFLU_RS12640	0.48	+2.7
2,855,940	-		PFLU_RS12640	0.48	+0.4
2,855,940	-		PFLU_RS12640	0.48	+2.2
2,856,018	+		PFLU_RS12640	0.53	-1.8
2,856,244	+		PFLU_RS12640	0.67	-1.0
2,856,255	+		PFLU_RS12640	0.68	+2.1
2,856,255	+		PFLU_RS12640	0.68	-0.6
2,856,255	+		PFLU_RS12640	0.68	-1.2
2,856,256	-		PFLU_RS12640	0.68	+1.1
2,856,256	-		PFLU_RS12640	0.68	+0.4
2,856,256	-		PFLU_RS12640	0.68	-0.6
2,856,256	-		PFLU_RS12640	0.68	-0.9
2,856,259	+		PFLU_RS12640	0.68	-0.3
2,856,259	+		PFLU_RS12640	0.68	+0.8
2,856,259	+		PFLU_RS12640	0.68	-0.2
2,856,259	+		PFLU_RS12640	0.68	+0.2
2,856,259	+		PFLU_RS12640	0.68	+1.7
2,856,259	+		PFLU_RS12640	0.68	+0.9
2,856,260	-		PFLU_RS12640	0.68	-0.6
2,856,260	-		PFLU_RS12640	0.68	-0.2
2,856,260	-		PFLU_RS12640	0.68	+0.9
2,856,260	-		PFLU_RS12640	0.68	+0.6
2,856,260	-		PFLU_RS12640	0.68	+0.2
2,856,260	-		PFLU_RS12640	0.68	-1.4
2,856,260	-		PFLU_RS12640	0.68	+0.9
2,856,359	-		PFLU_RS12640	0.75	-1.4
2,856,359	-		PFLU_RS12640	0.75	+1.2
2,856,391	+		PFLU_RS12640	0.77	+1.5
2,856,391	+		PFLU_RS12640	0.77	+2.1
2,856,392	-		PFLU_RS12640	0.77	-0.8
2,856,502	+		PFLU_RS12640	0.84	+0.8
2,856,502	+		PFLU_RS12640	0.84	+2.4
2,856,502	+		PFLU_RS12640	0.84	+0.1
2,856,502	+		PFLU_RS12640	0.84	-0.6
2,856,502	+		PFLU_RS12640	0.84	+0.5
2,856,503	-		PFLU_RS12640	0.84	-0.5
2,856,503	-		PFLU_RS12640	0.84	+0.5
2,856,503	-		PFLU_RS12640	0.84	-2.0
2,856,503	-		PFLU_RS12640	0.84	-0.4
2,856,649	+				-1.4
2,856,649	+				+1.8
2,856,649	+				-1.2
2,856,649	+				-2.5
2,856,649	+				-2.2
2,856,649	+				+1.4
2,856,649	+				-1.6
2,856,650	-				+1.4
2,856,650	-				-2.6
2,856,650	-				-0.6
2,856,650	-				-1.6
2,856,650	-				-1.0
2,856,650	-				-1.2
2,856,650	-				-0.4
2,856,737	-				-1.9
2,856,737	-				+0.8
2,856,737	-				-1.4
2,856,738	+				+2.5
2,856,738	+				-0.6
2,856,765	+				-0.1
2,856,765	+				+1.0
2,856,766	-				+0.4
2,856,766	-				-2.3
2,856,770	+				+2.4
2,856,791	+				-1.2
2,856,791	+				+1.2
2,856,791	+				-2.6
2,856,791	+				-0.4
2,856,791	+				-1.4
2,856,791	+				+0.2
2,856,791	+				-0.2
2,856,791	+				+1.0
2,856,791	+				-1.6
2,856,792	-				-3.2
2,856,792	-				-1.0
2,856,792	-				+3.1
2,856,792	-				+1.5
2,856,792	-				-1.0
2,856,792	-				+0.9
2,856,792	-				-1.0
2,856,792	-				+2.5
2,856,792	-				+4.4
2,856,806	-				-0.1
2,856,806	-				-0.8
2,856,806	-				+0.3
2,856,806	-				+0.8
2,856,806	-				+1.9
2,856,806	-				+3.8
2,856,806	-				+1.0
2,856,806	-				-1.8
2,856,806	-				-0.6
2,856,806	-				-3.2
2,856,806	-				-0.1
2,856,806	-				-0.1
2,856,806	-				-0.0
2,856,806	-				+0.8
2,856,806	-				+0.1
2,856,806	-				+1.7
2,856,806	-				+2.1
2,856,806	-				-2.1
2,856,806	-				-1.2
2,856,806	-				-1.8
2,856,806	-				+2.9
2,856,806	-				+2.4
2,856,806	-				-0.0
2,856,806	-				-1.1
2,856,806	-				-1.4
2,856,806	-				-2.3
2,856,806	-				-0.6
2,856,806	-				-1.0
2,856,811	-				-1.0
2,856,811	-				-1.6
2,856,877	+				+0.6
2,856,883	+				-2.1
2,856,883	+				+0.4
2,856,883	+				-0.4
2,856,883	+				-1.2
2,856,883	+				-0.5
2,856,883	+				+2.4
2,856,883	+				-0.2
2,856,883	+				-0.5
2,856,883	+				-1.0
2,856,883	+				+0.9
2,856,884	-				-1.4
2,856,884	-				+0.9
2,856,884	-				-2.3
2,856,884	-				+0.5
2,856,884	-				+2.9
2,856,884	-				+0.4
2,856,971	+				+2.4
2,856,971	+				-2.5
2,856,971	+				+0.4
2,856,971	+				-1.6
2,856,971	+				-0.2
2,856,971	+				-1.4
2,856,971	+				+0.2
2,856,971	+				+1.9
2,856,971	+				-2.2
2,856,971	+				+1.8
2,856,971	+				-0.1
2,856,971	+				-2.0
2,856,972	-				+1.9
2,856,972	-				+3.8
2,856,972	-				+2.9
2,856,972	-				+0.4
2,856,972	-				-0.2
2,856,972	-				+1.6
2,856,972	-				+1.4
2,856,972	-				-0.5
2,856,972	-				+0.4
2,856,972	-				-0.9
2,856,972	-				-1.2
2,856,972	-				+0.2
2,856,975	+				+0.1
2,856,975	+				-0.4
2,856,975	+				+2.2
2,856,975	+				-0.6
2,856,975	+				-0.9
2,856,975	+				+3.3
2,856,975	+				+0.3
2,856,976	-				+0.2
2,856,976	-				+0.2
2,856,976	-				-0.8
2,856,979	+				-2.1
2,856,979	+				+3.4
2,856,980	-				+2.8
2,856,980	-				+0.2
2,856,980	-				+1.7
2,856,980	-				+0.2
2,857,140	-		PFLU_RS12645	0.66	-2.5
2,857,279	+				+1.5
2,857,465	+		PFLU_RS12650	0.77	-2.2
2,857,465	+		PFLU_RS12650	0.77	-1.2
2,857,465	+		PFLU_RS12650	0.77	-1.2
2,857,465	+		PFLU_RS12650	0.77	-1.1
2,857,466	-		PFLU_RS12650	0.77	-0.6
2,857,466	-		PFLU_RS12650	0.77	+0.4
2,857,466	-		PFLU_RS12650	0.77	-1.8
2,857,466	-		PFLU_RS12650	0.77	-1.2
2,857,466	-		PFLU_RS12650	0.77	-0.6
2,857,520	+				+1.8
2,857,520	+				+2.3
2,857,520	+				-0.8
2,857,520	+				+4.1
2,857,520	+				-1.2
2,857,521	-				-1.4
2,857,521	-				-0.6
2,857,521	-				+1.4
2,857,521	-				+3.1
2,857,539	+				+0.8
2,857,539	+				+0.6
2,857,539	+				+1.1
2,857,540	-				-0.5
2,857,594	+				+0.5
2,857,595	-				-1.0
2,857,625	+				-0.2
2,857,625	+				+0.3
2,857,625	+				-2.1
2,857,625	+				+0.2
2,857,625	+				-2.2
2,857,626	-				+0.5
2,857,626	-				-1.8
2,857,626	-				+0.6
2,857,626	-				-0.6
2,857,626	-				-0.6
2,857,626	-				+0.6
2,857,626	-				+0.4