Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21390

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS21385 and PFLU_RS21390 overlap by 4 nucleotidesPFLU_RS21390 and PFLU_RS21395 are separated by 41 nucleotides PFLU_RS21385: PFLU_RS21385 - allantoinase PuuE, at 4,808,826 to 4,809,752 _RS21385 PFLU_RS21390: PFLU_RS21390 - 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, at 4,809,749 to 4,810,264 _RS21390 PFLU_RS21395: PFLU_RS21395 - allantoicase, at 4,810,306 to 4,811,301 _RS21395 Position (kb) 4809 4810 4811Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4808.758 kb on + strandat 4808.759 kb on - strandat 4808.773 kb on - strandat 4808.798 kb on - strandat 4808.920 kb on + strand, within PFLU_RS21385at 4808.921 kb on - strand, within PFLU_RS21385at 4808.928 kb on + strand, within PFLU_RS21385at 4808.928 kb on + strand, within PFLU_RS21385at 4808.928 kb on + strand, within PFLU_RS21385at 4808.929 kb on - strand, within PFLU_RS21385at 4808.929 kb on - strand, within PFLU_RS21385at 4808.929 kb on - strand, within PFLU_RS21385at 4808.929 kb on - strand, within PFLU_RS21385at 4808.929 kb on - strand, within PFLU_RS21385at 4808.929 kb on - strand, within PFLU_RS21385at 4809.048 kb on + strand, within PFLU_RS21385at 4809.048 kb on + strand, within PFLU_RS21385at 4809.048 kb on + strand, within PFLU_RS21385at 4809.048 kb on + strand, within PFLU_RS21385at 4809.049 kb on - strand, within PFLU_RS21385at 4809.054 kb on + strand, within PFLU_RS21385at 4809.222 kb on + strand, within PFLU_RS21385at 4809.222 kb on + strand, within PFLU_RS21385at 4809.223 kb on - strand, within PFLU_RS21385at 4809.223 kb on - strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.228 kb on + strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.229 kb on - strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.257 kb on + strand, within PFLU_RS21385at 4809.258 kb on - strand, within PFLU_RS21385at 4809.258 kb on - strand, within PFLU_RS21385at 4809.258 kb on - strand, within PFLU_RS21385at 4809.258 kb on - strand, within PFLU_RS21385at 4809.258 kb on - strand, within PFLU_RS21385at 4809.258 kb on - strand, within PFLU_RS21385at 4809.258 kb on - strand, within PFLU_RS21385at 4809.258 kb on - strand, within PFLU_RS21385at 4809.315 kb on + strand, within PFLU_RS21385at 4809.315 kb on + strand, within PFLU_RS21385at 4809.316 kb on - strand, within PFLU_RS21385at 4809.375 kb on + strand, within PFLU_RS21385at 4809.390 kb on + strand, within PFLU_RS21385at 4809.390 kb on + strand, within PFLU_RS21385at 4809.390 kb on + strand, within PFLU_RS21385at 4809.390 kb on + strand, within PFLU_RS21385at 4809.390 kb on + strand, within PFLU_RS21385at 4809.390 kb on + strand, within PFLU_RS21385at 4809.391 kb on - strand, within PFLU_RS21385at 4809.391 kb on - strand, within PFLU_RS21385at 4809.391 kb on - strand, within PFLU_RS21385at 4809.391 kb on - strand, within PFLU_RS21385at 4809.409 kb on - strand, within PFLU_RS21385at 4809.456 kb on + strand, within PFLU_RS21385at 4809.456 kb on + strand, within PFLU_RS21385at 4809.456 kb on + strand, within PFLU_RS21385at 4809.456 kb on + strand, within PFLU_RS21385at 4809.457 kb on - strand, within PFLU_RS21385at 4809.457 kb on - strand, within PFLU_RS21385at 4809.529 kb on - strand, within PFLU_RS21385at 4809.529 kb on - strand, within PFLU_RS21385at 4809.556 kb on - strand, within PFLU_RS21385at 4809.650 kb on + strand, within PFLU_RS21385at 4809.657 kb on + strand, within PFLU_RS21385at 4809.657 kb on + strand, within PFLU_RS21385at 4809.658 kb on - strand, within PFLU_RS21385at 4809.658 kb on - strand, within PFLU_RS21385at 4809.733 kb on - strandat 4809.733 kb on - strandat 4809.733 kb on - strandat 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.821 kb on + strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4809.822 kb on - strand, within PFLU_RS21390at 4810.042 kb on + strand, within PFLU_RS21390at 4810.044 kb on + strand, within PFLU_RS21390at 4810.044 kb on + strand, within PFLU_RS21390at 4810.044 kb on + strand, within PFLU_RS21390at 4810.044 kb on + strand, within PFLU_RS21390at 4810.044 kb on + strand, within PFLU_RS21390at 4810.044 kb on + strand, within PFLU_RS21390at 4810.044 kb on + strand, within PFLU_RS21390at 4810.044 kb on + strand, within PFLU_RS21390at 4810.045 kb on - strand, within PFLU_RS21390at 4810.045 kb on - strand, within PFLU_RS21390at 4810.045 kb on - strand, within PFLU_RS21390at 4810.045 kb on - strand, within PFLU_RS21390at 4810.045 kb on - strand, within PFLU_RS21390at 4810.045 kb on - strand, within PFLU_RS21390at 4810.045 kb on - strand, within PFLU_RS21390at 4810.097 kb on + strand, within PFLU_RS21390at 4810.097 kb on + strand, within PFLU_RS21390at 4810.097 kb on + strand, within PFLU_RS21390at 4810.097 kb on + strand, within PFLU_RS21390at 4810.097 kb on + strand, within PFLU_RS21390at 4810.097 kb on + strand, within PFLU_RS21390at 4810.098 kb on - strand, within PFLU_RS21390at 4810.098 kb on - strand, within PFLU_RS21390at 4810.098 kb on - strand, within PFLU_RS21390at 4810.098 kb on - strand, within PFLU_RS21390at 4810.098 kb on - strand, within PFLU_RS21390at 4810.098 kb on - strand, within PFLU_RS21390at 4810.098 kb on - strand, within PFLU_RS21390at 4810.098 kb on - strand, within PFLU_RS21390at 4810.134 kb on + strand, within PFLU_RS21390at 4810.134 kb on + strand, within PFLU_RS21390at 4810.135 kb on - strand, within PFLU_RS21390at 4810.252 kb on - strandat 4810.262 kb on + strandat 4810.285 kb on + strandat 4810.285 kb on + strandat 4810.285 kb on + strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.286 kb on - strandat 4810.289 kb on + strandat 4810.289 kb on + strandat 4810.290 kb on - strandat 4810.290 kb on - strandat 4810.290 kb on - strandat 4810.290 kb on - strandat 4810.290 kb on - strandat 4810.316 kb on - strandat 4810.513 kb on + strand, within PFLU_RS21395at 4810.514 kb on - strand, within PFLU_RS21395at 4810.514 kb on - strand, within PFLU_RS21395at 4810.595 kb on - strand, within PFLU_RS21395at 4810.595 kb on - strand, within PFLU_RS21395at 4810.709 kb on - strand, within PFLU_RS21395at 4810.759 kb on + strand, within PFLU_RS21395at 4810.759 kb on + strand, within PFLU_RS21395at 4810.792 kb on + strand, within PFLU_RS21395at 4810.792 kb on + strand, within PFLU_RS21395at 4810.793 kb on - strand, within PFLU_RS21395at 4810.860 kb on + strand, within PFLU_RS21395at 4810.860 kb on + strand, within PFLU_RS21395at 4810.860 kb on + strand, within PFLU_RS21395at 4810.860 kb on + strand, within PFLU_RS21395at 4810.861 kb on - strand, within PFLU_RS21395at 4810.861 kb on - strand, within PFLU_RS21395at 4810.974 kb on + strand, within PFLU_RS21395at 4810.974 kb on + strand, within PFLU_RS21395at 4810.974 kb on + strand, within PFLU_RS21395at 4810.975 kb on - strand, within PFLU_RS21395at 4810.975 kb on - strand, within PFLU_RS21395at 4811.226 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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4,808,758 + -0.8
4,808,759 - -0.2
4,808,773 - +1.5
4,808,798 - -0.3
4,808,920 + PFLU_RS21385 0.10 +0.7
4,808,921 - PFLU_RS21385 0.10 -0.4
4,808,928 + PFLU_RS21385 0.11 -1.4
4,808,928 + PFLU_RS21385 0.11 -0.3
4,808,928 + PFLU_RS21385 0.11 -2.4
4,808,929 - PFLU_RS21385 0.11 +2.3
4,808,929 - PFLU_RS21385 0.11 -1.3
4,808,929 - PFLU_RS21385 0.11 -1.2
4,808,929 - PFLU_RS21385 0.11 -1.0
4,808,929 - PFLU_RS21385 0.11 -2.9
4,808,929 - PFLU_RS21385 0.11 -0.2
4,809,048 + PFLU_RS21385 0.24 +1.2
4,809,048 + PFLU_RS21385 0.24 -1.0
4,809,048 + PFLU_RS21385 0.24 -2.3
4,809,048 + PFLU_RS21385 0.24 -2.0
4,809,049 - PFLU_RS21385 0.24 -2.3
4,809,054 + PFLU_RS21385 0.25 +1.2
4,809,222 + PFLU_RS21385 0.43 -0.7
4,809,222 + PFLU_RS21385 0.43 +1.1
4,809,223 - PFLU_RS21385 0.43 -2.7
4,809,223 - PFLU_RS21385 0.43 -0.7
4,809,228 + PFLU_RS21385 0.43 -2.4
4,809,228 + PFLU_RS21385 0.43 -1.5
4,809,228 + PFLU_RS21385 0.43 -1.4
4,809,228 + PFLU_RS21385 0.43 -0.6
4,809,228 + PFLU_RS21385 0.43 -2.4
4,809,228 + PFLU_RS21385 0.43 -1.9
4,809,228 + PFLU_RS21385 0.43 +1.1
4,809,228 + PFLU_RS21385 0.43 -0.7
4,809,228 + PFLU_RS21385 0.43 +0.6
4,809,228 + PFLU_RS21385 0.43 -0.9
4,809,228 + PFLU_RS21385 0.43 +0.4
4,809,229 - PFLU_RS21385 0.43 -3.6
4,809,229 - PFLU_RS21385 0.43 +0.4
4,809,229 - PFLU_RS21385 0.43 -2.5
4,809,229 - PFLU_RS21385 0.43 -2.2
4,809,229 - PFLU_RS21385 0.43 -0.7
4,809,229 - PFLU_RS21385 0.43 -0.2
4,809,229 - PFLU_RS21385 0.43 +0.3
4,809,229 - PFLU_RS21385 0.43 -0.4
4,809,229 - PFLU_RS21385 0.43 -0.5
4,809,229 - PFLU_RS21385 0.43 -3.3
4,809,229 - PFLU_RS21385 0.43 +0.2
4,809,229 - PFLU_RS21385 0.43 -0.2
4,809,257 + PFLU_RS21385 0.46 -1.0
4,809,257 + PFLU_RS21385 0.46 -0.7
4,809,257 + PFLU_RS21385 0.46 -0.2
4,809,257 + PFLU_RS21385 0.46 -0.4
4,809,257 + PFLU_RS21385 0.46 -2.6
4,809,257 + PFLU_RS21385 0.46 -3.1
4,809,257 + PFLU_RS21385 0.46 -0.2
4,809,257 + PFLU_RS21385 0.46 -3.2
4,809,257 + PFLU_RS21385 0.46 -1.9
4,809,257 + PFLU_RS21385 0.46 -3.0
4,809,257 + PFLU_RS21385 0.46 -0.0
4,809,258 - PFLU_RS21385 0.47 +0.6
4,809,258 - PFLU_RS21385 0.47 +0.2
4,809,258 - PFLU_RS21385 0.47 -0.0
4,809,258 - PFLU_RS21385 0.47 -1.0
4,809,258 - PFLU_RS21385 0.47 -1.0
4,809,258 - PFLU_RS21385 0.47 +0.0
4,809,258 - PFLU_RS21385 0.47 +0.7
4,809,258 - PFLU_RS21385 0.47 +1.8
4,809,315 + PFLU_RS21385 0.53 +0.8
4,809,315 + PFLU_RS21385 0.53 -2.4
4,809,316 - PFLU_RS21385 0.53 +0.8
4,809,375 + PFLU_RS21385 0.59 -0.7
4,809,390 + PFLU_RS21385 0.61 +0.6
4,809,390 + PFLU_RS21385 0.61 -1.7
4,809,390 + PFLU_RS21385 0.61 -0.3
4,809,390 + PFLU_RS21385 0.61 -0.6
4,809,390 + PFLU_RS21385 0.61 -2.1
4,809,390 + PFLU_RS21385 0.61 -1.2
4,809,391 - PFLU_RS21385 0.61 -0.0
4,809,391 - PFLU_RS21385 0.61 +0.4
4,809,391 - PFLU_RS21385 0.61 +1.2
4,809,391 - PFLU_RS21385 0.61 +0.5
4,809,409 - PFLU_RS21385 0.63 +0.7
4,809,456 + PFLU_RS21385 0.68 -3.3
4,809,456 + PFLU_RS21385 0.68 -0.9
4,809,456 + PFLU_RS21385 0.68 -3.6
4,809,456 + PFLU_RS21385 0.68 -0.9
4,809,457 - PFLU_RS21385 0.68 -0.0
4,809,457 - PFLU_RS21385 0.68 +0.6
4,809,529 - PFLU_RS21385 0.76 -1.3
4,809,529 - PFLU_RS21385 0.76 -2.5
4,809,556 - PFLU_RS21385 0.79 -0.5
4,809,650 + PFLU_RS21385 0.89 -0.0
4,809,657 + PFLU_RS21385 0.90 +1.0
4,809,657 + PFLU_RS21385 0.90 -0.3
4,809,658 - PFLU_RS21385 0.90 +0.2
4,809,658 - PFLU_RS21385 0.90 -0.8
4,809,733 - -0.0
4,809,733 - -0.4
4,809,733 - +0.7
4,809,821 + PFLU_RS21390 0.14 +0.1
4,809,821 + PFLU_RS21390 0.14 -0.0
4,809,821 + PFLU_RS21390 0.14 -1.7
4,809,821 + PFLU_RS21390 0.14 -2.3
4,809,821 + PFLU_RS21390 0.14 -1.4
4,809,821 + PFLU_RS21390 0.14 +0.9
4,809,821 + PFLU_RS21390 0.14 +0.9
4,809,821 + PFLU_RS21390 0.14 -1.2
4,809,821 + PFLU_RS21390 0.14 +0.5
4,809,821 + PFLU_RS21390 0.14 -2.4
4,809,821 + PFLU_RS21390 0.14 -1.7
4,809,821 + PFLU_RS21390 0.14 +0.1
4,809,822 - PFLU_RS21390 0.14 -0.1
4,809,822 - PFLU_RS21390 0.14 -0.2
4,809,822 - PFLU_RS21390 0.14 -1.0
4,809,822 - PFLU_RS21390 0.14 -2.3
4,809,822 - PFLU_RS21390 0.14 -1.3
4,809,822 - PFLU_RS21390 0.14 -2.1
4,809,822 - PFLU_RS21390 0.14 -1.2
4,809,822 - PFLU_RS21390 0.14 -2.2
4,809,822 - PFLU_RS21390 0.14 +0.4
4,809,822 - PFLU_RS21390 0.14 -1.4
4,809,822 - PFLU_RS21390 0.14 +0.6
4,810,042 + PFLU_RS21390 0.57 -2.8
4,810,044 + PFLU_RS21390 0.57 +0.9
4,810,044 + PFLU_RS21390 0.57 -0.2
4,810,044 + PFLU_RS21390 0.57 -0.9
4,810,044 + PFLU_RS21390 0.57 +0.6
4,810,044 + PFLU_RS21390 0.57 -0.0
4,810,044 + PFLU_RS21390 0.57 -1.2
4,810,044 + PFLU_RS21390 0.57 -0.4
4,810,044 + PFLU_RS21390 0.57 +0.2
4,810,045 - PFLU_RS21390 0.57 +0.4
4,810,045 - PFLU_RS21390 0.57 -2.3
4,810,045 - PFLU_RS21390 0.57 -1.4
4,810,045 - PFLU_RS21390 0.57 +0.3
4,810,045 - PFLU_RS21390 0.57 +0.3
4,810,045 - PFLU_RS21390 0.57 -2.2
4,810,045 - PFLU_RS21390 0.57 -1.5
4,810,097 + PFLU_RS21390 0.67 -0.3
4,810,097 + PFLU_RS21390 0.67 -0.1
4,810,097 + PFLU_RS21390 0.67 -0.3
4,810,097 + PFLU_RS21390 0.67 +0.3
4,810,097 + PFLU_RS21390 0.67 -0.4
4,810,097 + PFLU_RS21390 0.67 -1.7
4,810,098 - PFLU_RS21390 0.68 -0.9
4,810,098 - PFLU_RS21390 0.68 -0.8
4,810,098 - PFLU_RS21390 0.68 +2.1
4,810,098 - PFLU_RS21390 0.68 +0.5
4,810,098 - PFLU_RS21390 0.68 +1.4
4,810,098 - PFLU_RS21390 0.68 -0.7
4,810,098 - PFLU_RS21390 0.68 +0.5
4,810,098 - PFLU_RS21390 0.68 -2.6
4,810,134 + PFLU_RS21390 0.75 -0.9
4,810,134 + PFLU_RS21390 0.75 -1.8
4,810,135 - PFLU_RS21390 0.75 -0.4
4,810,252 - +1.6
4,810,262 + -0.7
4,810,285 + -0.2
4,810,285 + +1.8
4,810,285 + +0.7
4,810,286 - -1.9
4,810,286 - -0.4
4,810,286 - +0.4
4,810,286 - -0.9
4,810,286 - +0.8
4,810,286 - -1.1
4,810,286 - +0.2
4,810,286 - -0.6
4,810,286 - -0.4
4,810,286 - +1.3
4,810,286 - +0.8
4,810,286 - +1.1
4,810,289 + -0.1
4,810,289 + -2.2
4,810,290 - -1.4
4,810,290 - -0.1
4,810,290 - -2.1
4,810,290 - +0.1
4,810,290 - -0.3
4,810,316 - -1.0
4,810,513 + PFLU_RS21395 0.21 -0.9
4,810,514 - PFLU_RS21395 0.21 -1.6
4,810,514 - PFLU_RS21395 0.21 +0.6
4,810,595 - PFLU_RS21395 0.29 -2.4
4,810,595 - PFLU_RS21395 0.29 +0.8
4,810,709 - PFLU_RS21395 0.40 -1.2
4,810,759 + PFLU_RS21395 0.45 -0.5
4,810,759 + PFLU_RS21395 0.45 -0.0
4,810,792 + PFLU_RS21395 0.49 -1.2
4,810,792 + PFLU_RS21395 0.49 -0.1
4,810,793 - PFLU_RS21395 0.49 -1.2
4,810,860 + PFLU_RS21395 0.56 -3.4
4,810,860 + PFLU_RS21395 0.56 -2.4
4,810,860 + PFLU_RS21395 0.56 +0.7
4,810,860 + PFLU_RS21395 0.56 -1.4
4,810,861 - PFLU_RS21395 0.56 -1.3
4,810,861 - PFLU_RS21395 0.56 -1.0
4,810,974 + PFLU_RS21395 0.67 -0.0
4,810,974 + PFLU_RS21395 0.67 -1.2
4,810,974 + PFLU_RS21395 0.67 +0.4
4,810,975 - PFLU_RS21395 0.67 -0.4
4,810,975 - PFLU_RS21395 0.67 +0.1
4,811,226 + +0.2

Or see this region's nucleotide sequence