Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21615

Experiment: Trisodium citrate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C)
4,872,018	+		PFLU_RS21605	0.82	+1.8
4,872,250	+				-1.5
4,872,251	-				-0.0
4,872,251	-				-0.3
4,872,262	-				-1.7
4,872,276	+				+1.5
4,872,277	-				-0.0
4,872,308	-				+0.2
4,872,308	-				+0.3
4,872,329	+				-1.4
4,872,329	+				-1.2
4,872,329	+				+0.3
4,872,329	+				+0.6
4,872,329	+				+0.2
4,872,329	+				+1.0
4,872,329	+				-0.5
4,872,329	+				-0.0
4,872,329	+				+0.6
4,872,329	+				-0.6
4,872,329	+				+0.4
4,872,329	+				-0.7
4,872,330	-				-0.5
4,872,330	-				+0.6
4,872,330	-				+1.8
4,872,330	-				-2.0
4,872,330	-				-2.0
4,872,330	-				-0.4
4,872,330	-				-1.0
4,872,330	-				-1.1
4,872,330	-				+0.6
4,872,330	-				-0.7
4,872,330	-				-0.8
4,872,330	-				+1.3
4,872,384	+				+0.8
4,872,384	+				-0.8
4,872,384	+				+0.1
4,872,434	+				-0.9
4,872,495	+				+0.2
4,872,495	+				+0.6
4,872,495	+				-0.5
4,872,496	-				-0.9
4,872,496	-				-0.8
4,872,496	-				+1.4
4,872,566	+				-0.8
4,872,588	+				-0.8
4,872,588	+				+0.8
4,872,588	+				-0.5
4,872,588	+				-0.5
4,872,588	+				-1.3
4,872,588	+				+0.6
4,872,588	+				-0.8
4,872,588	+				+0.7
4,872,588	+				-1.0
4,872,588	+				+1.6
4,872,588	+				+1.4
4,872,588	+				-1.3
4,872,588	+				-0.2
4,872,588	+				+0.1
4,872,588	+				-1.5
4,872,588	+				-0.4
4,872,589	-				-1.6
4,872,589	-				+1.1
4,872,589	-				-0.8
4,872,589	-				-0.7
4,872,589	-				+1.5
4,872,589	-				+0.9
4,872,589	-				+1.4
4,872,589	-				+0.8
4,872,589	-				+1.7
4,872,589	-				-0.0
4,872,589	-				-0.8
4,872,589	-				+0.7
4,872,589	-				-1.5
4,872,589	-				+0.4
4,872,589	-				+1.2
4,872,589	-				-1.3
4,872,589	-				-2.8
4,872,589	-				+0.7
4,872,589	-				+1.7
4,872,589	-				-1.2
4,872,592	+				-0.3
4,872,592	+				-2.1
4,872,592	+				-1.2
4,872,592	+				+0.2
4,872,592	+				-1.1
4,872,592	+				-2.3
4,872,592	+				+1.8
4,872,593	-				+0.3
4,872,593	-				-1.2
4,872,593	-				+0.3
4,872,593	-				-2.6
4,872,593	-				+0.8
4,872,593	-				+2.1
4,872,593	-				-0.5
4,872,593	-				+1.2
4,872,593	-				+0.7
4,872,593	-				+0.4
4,872,593	-				+0.4
4,872,607	+				-1.5
4,872,607	+				-0.9
4,872,607	+				-0.2
4,872,607	+				-0.9
4,872,607	+				+0.5
4,872,607	+				-0.2
4,872,607	+				+0.2
4,872,608	-				-1.3
4,872,608	-				+0.4
4,872,608	-				+0.7
4,872,608	-				-2.2
4,872,608	-				+0.4
4,872,616	+				+0.2
4,872,616	+				+1.0
4,872,616	+				-2.0
4,872,616	+				+0.4
4,872,616	+				-1.4
4,872,616	+				-0.4
4,872,616	+				+0.2
4,872,617	-				-1.4
4,872,617	-				-1.8
4,872,617	-				-1.6
4,872,617	-				+0.1
4,872,617	-				-0.2
4,872,617	-				+1.1
4,872,661	+		PFLU_RS21610	0.16	-1.2
4,872,661	+		PFLU_RS21610	0.16	-1.1
4,872,662	-		PFLU_RS21610	0.16	-0.2
4,872,662	-		PFLU_RS21610	0.16	-1.5
4,872,662	-		PFLU_RS21610	0.16	-0.9
4,872,676	+		PFLU_RS21610	0.20	-0.8
4,872,755	-		PFLU_RS21610	0.40	+0.1
4,872,773	+		PFLU_RS21610	0.44	-1.4
4,872,773	+		PFLU_RS21610	0.44	-2.0
4,872,773	+		PFLU_RS21610	0.44	-0.3
4,872,773	+		PFLU_RS21610	0.44	+0.7
4,872,773	+		PFLU_RS21610	0.44	-0.6
4,872,773	+		PFLU_RS21610	0.44	+0.7
4,872,773	+		PFLU_RS21610	0.44	-1.0
4,872,773	+		PFLU_RS21610	0.44	-0.6
4,872,773	+		PFLU_RS21610	0.44	-0.9
4,872,773	+		PFLU_RS21610	0.44	+0.8
4,872,773	+		PFLU_RS21610	0.44	-2.7
4,872,773	+		PFLU_RS21610	0.44	-0.1
4,872,774	-		PFLU_RS21610	0.45	+1.1
4,872,774	-		PFLU_RS21610	0.45	+0.3
4,872,774	-		PFLU_RS21610	0.45	+0.0
4,872,774	-		PFLU_RS21610	0.45	-0.9
4,872,774	-		PFLU_RS21610	0.45	+1.6
4,872,774	-		PFLU_RS21610	0.45	+0.5
4,872,921	+		PFLU_RS21610	0.82	+0.1
4,872,921	+		PFLU_RS21610	0.82	-1.3
4,872,921	+		PFLU_RS21610	0.82	-0.2
4,872,922	-		PFLU_RS21610	0.82	-1.8
4,872,922	-		PFLU_RS21610	0.82	-0.1
4,872,922	-		PFLU_RS21610	0.82	-0.6
4,872,922	-		PFLU_RS21610	0.82	-1.4
4,872,922	-		PFLU_RS21610	0.82	+0.1
4,872,922	-		PFLU_RS21610	0.82	-1.4
4,872,922	-		PFLU_RS21610	0.82	-1.8
4,872,971	+				+0.8
4,872,971	+				-1.2
4,872,971	+				+0.8
4,872,971	+				+1.8
4,872,971	+				-0.6
4,872,971	+				-1.8
4,872,971	+				+1.2
4,872,971	+				-0.9
4,872,972	-				-1.4
4,872,972	-				+2.0
4,872,972	-				-0.6
4,872,972	-				+0.3
4,872,972	-				+0.1
4,873,152	+		PFLU_RS21615	0.33	-2.5
4,873,152	+		PFLU_RS21615	0.33	-0.1
4,873,152	+		PFLU_RS21615	0.33	-1.0
4,873,152	+		PFLU_RS21615	0.33	-2.8
4,873,153	-		PFLU_RS21615	0.33	-2.8
4,873,184	-		PFLU_RS21615	0.40	-1.1
4,873,184	-		PFLU_RS21615	0.40	-1.2
4,873,320	+		PFLU_RS21615	0.68	-1.2
4,873,320	+		PFLU_RS21615	0.68	-2.0
4,873,320	+		PFLU_RS21615	0.68	-1.5
4,873,320	+		PFLU_RS21615	0.68	-0.6
4,873,320	+		PFLU_RS21615	0.68	+0.8
4,873,320	+		PFLU_RS21615	0.68	-0.3
4,873,320	+		PFLU_RS21615	0.68	-1.3
4,873,320	+		PFLU_RS21615	0.68	-2.7
4,873,320	+		PFLU_RS21615	0.68	-2.5
4,873,320	+		PFLU_RS21615	0.68	-1.2
4,873,320	+		PFLU_RS21615	0.68	-1.0
4,873,320	+		PFLU_RS21615	0.68	-0.5
4,873,320	+		PFLU_RS21615	0.68	-0.8
4,873,320	+		PFLU_RS21615	0.68	-2.8
4,873,320	+		PFLU_RS21615	0.68	-1.1
4,873,320	+		PFLU_RS21615	0.68	-1.9
4,873,320	+		PFLU_RS21615	0.68	-2.1
4,873,321	-		PFLU_RS21615	0.68	-0.9
4,873,321	-		PFLU_RS21615	0.68	-1.5
4,873,321	-		PFLU_RS21615	0.68	-3.1
4,873,321	-		PFLU_RS21615	0.68	-2.6
4,873,321	-		PFLU_RS21615	0.68	-1.4
4,873,321	-		PFLU_RS21615	0.68	+0.1
4,873,321	-		PFLU_RS21615	0.68	-2.5
4,873,321	-		PFLU_RS21615	0.68	+0.2
4,873,321	-		PFLU_RS21615	0.68	-1.3
4,873,321	-		PFLU_RS21615	0.68	-0.9
4,873,356	+		PFLU_RS21615	0.75	-2.2
4,873,356	+		PFLU_RS21615	0.75	-2.8
4,873,357	-		PFLU_RS21615	0.76	-1.4
4,873,395	+		PFLU_RS21615	0.83	-3.3
4,873,395	+		PFLU_RS21615	0.83	-0.1
4,873,396	-		PFLU_RS21615	0.84	-1.5
4,873,396	-		PFLU_RS21615	0.84	-1.5
4,873,396	-		PFLU_RS21615	0.84	-1.4
4,873,396	-		PFLU_RS21615	0.84	-0.8
4,873,420	+		PFLU_RS21615	0.89	-0.4
4,873,420	+		PFLU_RS21615	0.89	-2.4
4,873,421	-		PFLU_RS21615	0.89	-1.2
4,873,421	-		PFLU_RS21615	0.89	+0.4
4,873,421	-		PFLU_RS21615	0.89	-1.2
4,873,421	-		PFLU_RS21615	0.89	-0.5
4,873,445	+				+0.6
4,873,445	+				-1.5
4,873,445	+				-1.4
4,873,445	+				-1.6
4,873,446	-				-0.6
4,873,446	-				-0.1
4,873,446	-				-1.9
4,873,446	-				-2.1
4,873,468	+				-1.4
4,873,468	+				-1.1
4,873,468	+				-1.6
4,873,468	+				-1.8
4,873,468	+				+2.8
4,873,468	+				+0.1
4,873,468	+				-2.7
4,873,468	+				-2.3
4,873,468	+				-0.9
4,873,468	+				-1.5
4,873,468	+				-0.8
4,873,468	+				+0.8
4,873,468	+				-2.5
4,873,468	+				-1.0
4,873,468	+				-1.8
4,873,468	+				-1.4
4,873,468	+				+0.2
4,873,469	-				+0.6
4,873,469	-				-1.4
4,873,469	-				+0.1
4,873,469	-				-2.5
4,873,469	-				-0.2
4,873,469	-				-0.6
4,873,469	-				-0.2
4,873,469	-				+0.5
4,873,469	-				-1.3
4,873,469	-				-0.8
4,873,469	-				-1.9
4,873,474	+				+1.4
4,873,475	-				-0.3
4,873,500	+				-0.3
4,873,500	+				-1.8
4,873,500	+				+1.4
4,873,500	+				-0.8
4,873,500	+				-0.2
4,873,500	+				+1.3
4,873,500	+				-0.4
4,873,500	+				-0.5
4,873,500	+				-1.8
4,873,500	+				-0.4
4,873,500	+				-2.7
4,873,500	+				-1.7
4,873,500	+				-0.8
4,873,500	+				-2.2
4,873,500	+				+0.9
4,873,500	+				-2.3
4,873,500	+				-0.7
4,873,500	+				-0.6
4,873,501	-				-0.2
4,873,501	-				+0.1
4,873,501	-				-0.5
4,873,501	-				+0.2
4,873,501	-				+1.6
4,873,501	-				+0.6
4,873,501	-				+1.3
4,873,501	-				+0.2
4,873,501	-				-0.1
4,873,501	-				-0.5
4,873,501	-				+1.5
4,873,501	-				-1.3
4,873,501	-				+0.8
4,873,501	-				+1.2
4,873,501	-				+0.3
4,873,501	-				+0.5
4,873,501	-				+1.8
4,873,501	-				+0.2
4,873,501	-				+0.4
4,873,501	-				+1.1
4,873,501	-				-1.4
4,873,501	-				+0.8
4,873,502	+				-1.2
4,873,502	+				-2.4
4,873,502	+				-2.1
4,873,502	+				-0.2
4,873,503	-				+1.8
4,873,503	-				+1.1
4,873,503	-				+0.1
4,873,544	+				+0.2
4,873,544	+				-1.3
4,873,544	+				-0.7
4,873,544	+				+1.1
4,873,544	+				+1.2
4,873,544	+				-1.8
4,873,544	+				-2.5
4,873,544	+				+0.2
4,873,544	+				-0.5
4,873,545	-				-1.6
4,873,545	-				-1.2
4,873,545	-				+1.5
4,873,545	-				-0.4
4,873,545	-				+0.6
4,873,545	-				-0.1
4,873,620	+				-0.2
4,873,620	+				-3.3
4,873,620	+				-2.0
4,873,759	+		PFLU_RS21620	0.25	-1.1
4,873,759	+		PFLU_RS21620	0.25	-1.2
4,873,759	+		PFLU_RS21620	0.25	+0.5
4,873,759	+		PFLU_RS21620	0.25	+0.8
4,873,760	-		PFLU_RS21620	0.25	-0.6
4,873,760	-		PFLU_RS21620	0.25	-1.2
4,873,780	+		PFLU_RS21620	0.28	-1.9
4,873,780	+		PFLU_RS21620	0.28	+2.8
4,873,780	+		PFLU_RS21620	0.28	-0.3
4,873,780	+		PFLU_RS21620	0.28	+0.3
4,873,780	+		PFLU_RS21620	0.28	+0.2
4,873,780	+		PFLU_RS21620	0.28	-0.3
4,873,780	+		PFLU_RS21620	0.28	-1.4
4,873,781	-		PFLU_RS21620	0.28	-2.6
4,873,781	-		PFLU_RS21620	0.28	-1.2
4,873,781	-		PFLU_RS21620	0.28	-0.5
4,873,781	-		PFLU_RS21620	0.28	-0.8
4,873,781	-		PFLU_RS21620	0.28	+0.7
4,873,781	-		PFLU_RS21620	0.28	+0.2
4,873,781	-		PFLU_RS21620	0.28	-1.7
4,873,850	+		PFLU_RS21620	0.36	-2.3
4,873,850	+		PFLU_RS21620	0.36	-0.5
4,873,850	+		PFLU_RS21620	0.36	-0.2
4,873,850	+		PFLU_RS21620	0.36	+0.5
4,873,850	+		PFLU_RS21620	0.36	+0.2
4,873,850	+		PFLU_RS21620	0.36	+2.2
4,873,851	-		PFLU_RS21620	0.37	-1.3
4,873,851	-		PFLU_RS21620	0.37	-0.5
4,873,851	-		PFLU_RS21620	0.37	-0.7
4,873,851	-		PFLU_RS21620	0.37	+1.8
4,873,851	-		PFLU_RS21620	0.37	-1.2
4,873,936	+		PFLU_RS21620	0.47	-1.7
4,873,936	+		PFLU_RS21620	0.47	+0.4
4,873,936	+		PFLU_RS21620	0.47	-1.2
4,873,937	-		PFLU_RS21620	0.47	-2.3
4,873,937	-		PFLU_RS21620	0.47	+0.7
4,873,937	-		PFLU_RS21620	0.47	-1.3
4,874,308	+				+1.2
4,874,308	+				+0.8
4,874,309	-				-1.1
4,874,422	-				+0.3