Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS27745

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
6,175,156	+		PFLU_RS27735	0.75	+0.9
6,175,156	+		PFLU_RS27735	0.75	-1.0
6,175,156	+		PFLU_RS27735	0.75	+0.6
6,175,157	-		PFLU_RS27735	0.75	+1.2
6,175,226	+		PFLU_RS27735	0.85	-0.3
6,175,226	+		PFLU_RS27735	0.85	+0.1
6,175,226	+		PFLU_RS27735	0.85	-2.5
6,175,226	+		PFLU_RS27735	0.85	+2.5
6,175,226	+		PFLU_RS27735	0.85	+1.7
6,175,226	+		PFLU_RS27735	0.85	+1.4
6,175,226	+		PFLU_RS27735	0.85	-2.4
6,175,226	+		PFLU_RS27735	0.85	-1.0
6,175,247	+		PFLU_RS27735	0.88	+0.8
6,175,247	+		PFLU_RS27735	0.88	-0.3
6,175,457	+		PFLU_RS27740	0.18	+2.5
6,175,466	+		PFLU_RS27740	0.19	-0.1
6,175,466	+		PFLU_RS27740	0.19	+0.8
6,175,466	+		PFLU_RS27740	0.19	+2.7
6,175,467	-		PFLU_RS27740	0.19	-1.0
6,175,467	-		PFLU_RS27740	0.19	+0.3
6,175,467	-		PFLU_RS27740	0.19	+2.5
6,175,467	-		PFLU_RS27740	0.19	+0.3
6,175,496	-		PFLU_RS27740	0.23	-0.7
6,175,496	-		PFLU_RS27740	0.23	-1.3
6,175,525	+		PFLU_RS27740	0.27	-3.3
6,175,525	+		PFLU_RS27740	0.27	-0.7
6,175,525	+		PFLU_RS27740	0.27	+2.0
6,175,525	+		PFLU_RS27740	0.27	+1.3
6,175,525	+		PFLU_RS27740	0.27	-0.8
6,175,525	+		PFLU_RS27740	0.27	-0.8
6,175,525	+		PFLU_RS27740	0.27	+1.4
6,175,525	+		PFLU_RS27740	0.27	+0.4
6,175,525	+		PFLU_RS27740	0.27	-2.9
6,175,525	+		PFLU_RS27740	0.27	-0.5
6,175,526	-		PFLU_RS27740	0.28	-0.4
6,175,526	-		PFLU_RS27740	0.28	-0.3
6,175,526	-		PFLU_RS27740	0.28	+1.8
6,175,526	-		PFLU_RS27740	0.28	-2.5
6,175,526	-		PFLU_RS27740	0.28	-2.7
6,175,526	-		PFLU_RS27740	0.28	-0.3
6,175,526	-		PFLU_RS27740	0.28	-1.7
6,175,526	-		PFLU_RS27740	0.28	-0.2
6,175,526	-		PFLU_RS27740	0.28	-0.3
6,175,526	-		PFLU_RS27740	0.28	+0.9
6,175,526	-		PFLU_RS27740	0.28	-1.9
6,175,526	-		PFLU_RS27740	0.28	-2.0
6,175,531	+		PFLU_RS27740	0.28	+1.6
6,175,531	+		PFLU_RS27740	0.28	-1.0
6,175,531	+		PFLU_RS27740	0.28	+0.9
6,175,531	+		PFLU_RS27740	0.28	-0.7
6,175,531	+		PFLU_RS27740	0.28	-0.3
6,175,531	+		PFLU_RS27740	0.28	+1.5
6,175,531	+		PFLU_RS27740	0.28	+0.9
6,175,531	+		PFLU_RS27740	0.28	+0.9
6,175,531	+		PFLU_RS27740	0.28	+1.8
6,175,531	+		PFLU_RS27740	0.28	-2.2
6,175,532	-		PFLU_RS27740	0.28	-0.1
6,175,532	-		PFLU_RS27740	0.28	+0.5
6,175,532	-		PFLU_RS27740	0.28	-0.0
6,175,532	-		PFLU_RS27740	0.28	+0.9
6,175,576	+		PFLU_RS27740	0.35	-0.7
6,175,576	+		PFLU_RS27740	0.35	+0.5
6,175,576	+		PFLU_RS27740	0.35	-0.0
6,175,577	-		PFLU_RS27740	0.35	-1.5
6,175,577	-		PFLU_RS27740	0.35	-0.9
6,175,577	-		PFLU_RS27740	0.35	+1.1
6,175,577	-		PFLU_RS27740	0.35	+1.1
6,175,577	-		PFLU_RS27740	0.35	+1.0
6,175,579	+		PFLU_RS27740	0.35	-1.9
6,175,580	-		PFLU_RS27740	0.35	+1.8
6,175,687	+		PFLU_RS27740	0.50	+1.1
6,175,884	+		PFLU_RS27740	0.78	+1.0
6,175,884	+		PFLU_RS27740	0.78	-2.3
6,175,884	+		PFLU_RS27740	0.78	-0.1
6,175,885	-		PFLU_RS27740	0.78	+1.0
6,175,885	-		PFLU_RS27740	0.78	-0.5
6,175,885	-		PFLU_RS27740	0.78	-2.5
6,175,888	+		PFLU_RS27740	0.78	-1.8
6,175,888	+		PFLU_RS27740	0.78	-0.7
6,175,888	+		PFLU_RS27740	0.78	+1.6
6,175,889	-		PFLU_RS27740	0.79	-1.5
6,175,889	-		PFLU_RS27740	0.79	+1.6
6,175,889	-		PFLU_RS27740	0.79	+0.7
6,175,889	-		PFLU_RS27740	0.79	+2.7
6,175,889	-		PFLU_RS27740	0.79	+1.1
6,175,889	-		PFLU_RS27740	0.79	-2.9
6,175,889	-		PFLU_RS27740	0.79	-2.8
6,175,945	+		PFLU_RS27740	0.86	+0.5
6,175,945	+		PFLU_RS27740	0.86	+0.3
6,175,945	+		PFLU_RS27740	0.86	+1.0
6,175,945	+		PFLU_RS27740	0.86	+1.4
6,175,945	+		PFLU_RS27740	0.86	+0.6
6,175,945	+		PFLU_RS27740	0.86	-2.5
6,175,946	-		PFLU_RS27740	0.87	+0.6
6,175,946	-		PFLU_RS27740	0.87	-0.3
6,175,946	-		PFLU_RS27740	0.87	-0.2
6,175,946	-		PFLU_RS27740	0.87	+1.1
6,175,946	-		PFLU_RS27740	0.87	-2.0
6,175,946	-		PFLU_RS27740	0.87	+2.1
6,175,946	-		PFLU_RS27740	0.87	-2.7
6,175,946	-		PFLU_RS27740	0.87	-1.0
6,175,946	-		PFLU_RS27740	0.87	-0.8
6,175,946	-		PFLU_RS27740	0.87	-0.1
6,175,946	-		PFLU_RS27740	0.87	+1.2
6,175,966	+		PFLU_RS27740	0.89	+0.4
6,175,966	+		PFLU_RS27740	0.89	-3.2
6,175,966	+		PFLU_RS27740	0.89	+2.4
6,175,966	+		PFLU_RS27740	0.89	-0.3
6,175,967	-		PFLU_RS27740	0.90	-2.5
6,175,967	-		PFLU_RS27740	0.90	-3.1
6,175,967	-		PFLU_RS27740	0.90	+2.1
6,176,075	+				-2.0
6,176,075	+				+2.0
6,176,075	+				+1.5
6,176,075	+				+1.4
6,176,089	+				-0.1
6,176,089	+				-2.1
6,176,089	+				+2.1
6,176,089	+				+2.1
6,176,089	+				+2.0
6,176,089	+				-0.5
6,176,089	+				-0.9
6,176,089	+				+0.9
6,176,089	+				-0.0
6,176,089	+				+1.2
6,176,090	-				-0.1
6,176,090	-				-1.6
6,176,090	-				-2.0
6,176,090	-				+1.5
6,176,208	+				+0.4
6,176,209	-				+0.4
6,176,361	+		PFLU_RS27745	0.30	-0.2
6,176,361	+		PFLU_RS27745	0.30	+3.2
6,176,361	+		PFLU_RS27745	0.30	+2.3
6,176,361	+		PFLU_RS27745	0.30	-1.7
6,176,361	+		PFLU_RS27745	0.30	-2.0
6,176,361	+		PFLU_RS27745	0.30	-1.4
6,176,361	+		PFLU_RS27745	0.30	+3.0
6,176,362	-		PFLU_RS27745	0.30	-0.9
6,176,362	-		PFLU_RS27745	0.30	+2.5
6,176,362	-		PFLU_RS27745	0.30	+3.3
6,176,500	+		PFLU_RS27745	0.49	-1.1
6,176,500	+		PFLU_RS27745	0.49	-0.8
6,176,500	+		PFLU_RS27745	0.49	+2.0
6,176,501	-		PFLU_RS27745	0.49	-1.2
6,176,501	-		PFLU_RS27745	0.49	+1.3
6,176,501	-		PFLU_RS27745	0.49	-0.4
6,176,539	+		PFLU_RS27745	0.55	+3.0
6,176,540	-		PFLU_RS27745	0.55	+1.9
6,176,540	-		PFLU_RS27745	0.55	+2.5
6,176,922	+				+2.4
6,176,922	+				+1.1
6,176,922	+				+0.2
6,176,922	+				-0.8
6,176,922	+				-0.2
6,176,923	-				+2.2
6,176,923	-				+0.9
6,176,952	+				+0.9
6,176,952	+				+1.1
6,176,952	+				+0.3
6,176,952	+				-0.7
6,176,953	-				-1.2
6,176,953	-				-1.9
6,176,970	-				-2.2
6,177,263	+		PFLU_RS27750	0.49	-1.4
6,177,391	+		PFLU_RS27750	0.70	+0.8
6,177,392	-		PFLU_RS27750	0.70	+1.5
6,177,444	+		PFLU_RS27750	0.78	-0.2
6,177,444	+		PFLU_RS27750	0.78	-2.8
6,177,444	+		PFLU_RS27750	0.78	+1.9
6,177,444	+		PFLU_RS27750	0.78	+3.2
6,177,444	+		PFLU_RS27750	0.78	+2.2
6,177,444	+		PFLU_RS27750	0.78	-1.1
6,177,444	+		PFLU_RS27750	0.78	+0.8
6,177,444	+		PFLU_RS27750	0.78	+2.8
6,177,444	+		PFLU_RS27750	0.78	+2.1
6,177,444	+		PFLU_RS27750	0.78	-1.2
6,177,444	+		PFLU_RS27750	0.78	-1.7
6,177,444	+		PFLU_RS27750	0.78	-2.5
6,177,444	+		PFLU_RS27750	0.78	-2.1
6,177,444	+		PFLU_RS27750	0.78	-1.2
6,177,444	+		PFLU_RS27750	0.78	-0.2
6,177,445	-		PFLU_RS27750	0.78	+0.2
6,177,445	-		PFLU_RS27750	0.78	+2.5
6,177,445	-		PFLU_RS27750	0.78	-3.1
6,177,445	-		PFLU_RS27750	0.78	-1.2
6,177,445	-		PFLU_RS27750	0.78	+2.5
6,177,445	-		PFLU_RS27750	0.78	+2.3
6,177,467	+		PFLU_RS27750	0.82	-0.6
6,177,468	-		PFLU_RS27750	0.82	-0.3
6,177,468	-		PFLU_RS27750	0.82	-1.8
6,177,468	-		PFLU_RS27750	0.82	-0.6
6,177,501	+		PFLU_RS27750	0.87	-1.1
6,177,513	+		PFLU_RS27750	0.89	-1.5
6,177,522	-				+1.4
6,177,522	-				+2.5
6,177,522	-				+2.5
6,177,540	+				-0.7
6,177,541	-				-0.1
6,177,541	-				+1.2
6,177,546	+				-1.4
6,177,546	+				+0.0
6,177,546	+				-2.2
6,177,546	+				-1.1
6,177,547	-				+2.8
6,177,547	-				-0.2
6,177,547	-				+1.6
6,177,547	-				-2.4
6,177,547	-				+3.4
6,177,547	-				+1.5
6,177,577	-				+2.6
6,177,603	+				+0.5
6,177,603	+				+3.2
6,177,604	-				+2.1
6,177,604	-				-1.0
6,177,604	-				-1.0
6,177,841	+		PFLU_RS27755	0.23	-1.2
6,177,841	+		PFLU_RS27755	0.23	-1.2
6,177,841	+		PFLU_RS27755	0.23	-0.8
6,177,841	+		PFLU_RS27755	0.23	+1.9
6,177,842	-		PFLU_RS27755	0.24	-1.2
6,177,842	-		PFLU_RS27755	0.24	+1.5