Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26980

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
6,020,660	+		PFLU_RS26975	0.38	-1.4
6,020,661	-		PFLU_RS26975	0.38	+0.6
6,020,661	-		PFLU_RS26975	0.38	+0.1
6,020,661	-		PFLU_RS26975	0.38	-1.3
6,020,684	+		PFLU_RS26975	0.40	+1.8
6,020,684	+		PFLU_RS26975	0.40	+0.4
6,020,684	+		PFLU_RS26975	0.40	-0.5
6,020,684	+		PFLU_RS26975	0.40	+0.6
6,020,684	+		PFLU_RS26975	0.40	-1.5
6,020,685	-		PFLU_RS26975	0.40	-1.2
6,020,685	-		PFLU_RS26975	0.40	-3.0
6,020,685	-		PFLU_RS26975	0.40	+0.2
6,020,685	-		PFLU_RS26975	0.40	-1.5
6,020,685	-		PFLU_RS26975	0.40	-0.2
6,020,685	-		PFLU_RS26975	0.40	-1.9
6,020,757	+		PFLU_RS26975	0.45	-0.7
6,020,757	+		PFLU_RS26975	0.45	-1.5
6,020,757	+		PFLU_RS26975	0.45	-0.1
6,020,757	+		PFLU_RS26975	0.45	-1.5
6,020,758	-		PFLU_RS26975	0.46	-1.5
6,020,758	-		PFLU_RS26975	0.46	-0.1
6,020,758	-		PFLU_RS26975	0.46	+1.6
6,020,758	-		PFLU_RS26975	0.46	-1.2
6,020,758	-		PFLU_RS26975	0.46	-0.6
6,020,758	-		PFLU_RS26975	0.46	-0.7
6,020,761	+		PFLU_RS26975	0.46	+2.3
6,020,761	+		PFLU_RS26975	0.46	-0.3
6,020,761	+		PFLU_RS26975	0.46	+0.1
6,020,761	+		PFLU_RS26975	0.46	-2.1
6,020,762	-		PFLU_RS26975	0.46	+2.0
6,020,762	-		PFLU_RS26975	0.46	+1.1
6,020,762	-		PFLU_RS26975	0.46	-0.1
6,020,762	-		PFLU_RS26975	0.46	-1.3
6,020,843	+		PFLU_RS26975	0.52	-1.2
6,020,843	+		PFLU_RS26975	0.52	+2.5
6,020,885	+		PFLU_RS26975	0.56	-1.6
6,020,885	+		PFLU_RS26975	0.56	+0.7
6,020,885	+		PFLU_RS26975	0.56	-1.2
6,020,885	+		PFLU_RS26975	0.56	+1.2
6,020,885	+		PFLU_RS26975	0.56	-0.2
6,020,885	+		PFLU_RS26975	0.56	-1.0
6,020,885	+		PFLU_RS26975	0.56	+1.0
6,020,885	+		PFLU_RS26975	0.56	-0.3
6,020,885	+		PFLU_RS26975	0.56	+1.5
6,020,885	+		PFLU_RS26975	0.56	-0.1
6,020,885	+		PFLU_RS26975	0.56	-2.7
6,020,885	+		PFLU_RS26975	0.56	-0.9
6,020,885	+		PFLU_RS26975	0.56	-0.0
6,020,885	+		PFLU_RS26975	0.56	-1.1
6,020,885	+		PFLU_RS26975	0.56	+0.5
6,020,885	+		PFLU_RS26975	0.56	-2.6
6,020,885	+		PFLU_RS26975	0.56	-1.0
6,020,885	+		PFLU_RS26975	0.56	-2.6
6,020,885	+		PFLU_RS26975	0.56	+2.2
6,020,885	+		PFLU_RS26975	0.56	-0.1
6,020,885	+		PFLU_RS26975	0.56	-1.1
6,020,885	+		PFLU_RS26975	0.56	-0.2
6,020,885	+		PFLU_RS26975	0.56	-0.7
6,020,885	+		PFLU_RS26975	0.56	+1.1
6,020,885	+		PFLU_RS26975	0.56	-0.5
6,020,885	+		PFLU_RS26975	0.56	-1.1
6,020,885	+		PFLU_RS26975	0.56	+1.5
6,020,885	+		PFLU_RS26975	0.56	+4.0
6,020,885	+		PFLU_RS26975	0.56	-1.1
6,020,885	+		PFLU_RS26975	0.56	-1.5
6,020,885	+		PFLU_RS26975	0.56	+0.3
6,020,885	+		PFLU_RS26975	0.56	+0.6
6,020,885	+		PFLU_RS26975	0.56	+0.1
6,020,885	+		PFLU_RS26975	0.56	+2.7
6,020,885	+		PFLU_RS26975	0.56	+2.5
6,020,885	+		PFLU_RS26975	0.56	-1.4
6,020,885	+		PFLU_RS26975	0.56	-0.8
6,020,885	+		PFLU_RS26975	0.56	+0.3
6,020,886	-		PFLU_RS26975	0.56	+1.2
6,020,886	-		PFLU_RS26975	0.56	-2.8
6,020,886	-		PFLU_RS26975	0.56	-0.6
6,020,886	-		PFLU_RS26975	0.56	-1.0
6,020,886	-		PFLU_RS26975	0.56	-0.6
6,020,886	-		PFLU_RS26975	0.56	+1.6
6,020,886	-		PFLU_RS26975	0.56	-1.4
6,020,886	-		PFLU_RS26975	0.56	-2.7
6,020,886	-		PFLU_RS26975	0.56	-2.2
6,020,886	-		PFLU_RS26975	0.56	+0.2
6,020,886	-		PFLU_RS26975	0.56	-1.0
6,020,886	-		PFLU_RS26975	0.56	+1.8
6,020,886	-		PFLU_RS26975	0.56	-2.7
6,020,886	-		PFLU_RS26975	0.56	+2.5
6,020,886	-		PFLU_RS26975	0.56	+0.4
6,020,886	-		PFLU_RS26975	0.56	+0.5
6,020,886	-		PFLU_RS26975	0.56	+0.2
6,020,886	-		PFLU_RS26975	0.56	-1.6
6,020,886	-		PFLU_RS26975	0.56	-1.2
6,020,886	-		PFLU_RS26975	0.56	+2.5
6,020,886	-		PFLU_RS26975	0.56	-1.6
6,020,886	-		PFLU_RS26975	0.56	+2.6
6,020,886	-		PFLU_RS26975	0.56	-1.6
6,020,886	-		PFLU_RS26975	0.56	+1.2
6,020,886	-		PFLU_RS26975	0.56	+2.1
6,020,891	+		PFLU_RS26975	0.56	-0.3
6,020,891	+		PFLU_RS26975	0.56	+0.9
6,020,891	+		PFLU_RS26975	0.56	+2.9
6,020,891	+		PFLU_RS26975	0.56	-0.5
6,020,891	+		PFLU_RS26975	0.56	-1.2
6,020,891	+		PFLU_RS26975	0.56	-0.6
6,020,891	+		PFLU_RS26975	0.56	+1.8
6,020,891	+		PFLU_RS26975	0.56	+1.5
6,020,891	+		PFLU_RS26975	0.56	-2.4
6,020,891	+		PFLU_RS26975	0.56	-0.7
6,020,892	-		PFLU_RS26975	0.56	-1.1
6,020,892	-		PFLU_RS26975	0.56	-2.7
6,020,892	-		PFLU_RS26975	0.56	-1.7
6,020,936	+		PFLU_RS26975	0.60	+3.2
6,020,936	+		PFLU_RS26975	0.60	+2.5
6,020,936	+		PFLU_RS26975	0.60	+1.6
6,020,936	+		PFLU_RS26975	0.60	-2.9
6,020,936	+		PFLU_RS26975	0.60	-1.8
6,020,936	+		PFLU_RS26975	0.60	+1.9
6,020,936	+		PFLU_RS26975	0.60	-0.9
6,020,937	-		PFLU_RS26975	0.60	-3.6
6,020,937	-		PFLU_RS26975	0.60	-2.2
6,020,937	-		PFLU_RS26975	0.60	-1.8
6,020,937	-		PFLU_RS26975	0.60	-1.4
6,020,937	-		PFLU_RS26975	0.60	+0.6
6,020,937	-		PFLU_RS26975	0.60	+2.8
6,021,062	+		PFLU_RS26975	0.70	-0.7
6,021,062	+		PFLU_RS26975	0.70	+2.2
6,021,063	-		PFLU_RS26975	0.70	-2.0
6,021,063	-		PFLU_RS26975	0.70	-1.5
6,021,063	-		PFLU_RS26975	0.70	+0.7
6,021,068	+		PFLU_RS26975	0.70	-0.1
6,021,068	+		PFLU_RS26975	0.70	+0.9
6,021,068	+		PFLU_RS26975	0.70	-0.4
6,021,069	-		PFLU_RS26975	0.70	+0.9
6,021,069	-		PFLU_RS26975	0.70	-1.4
6,021,069	-		PFLU_RS26975	0.70	+2.6
6,021,069	-		PFLU_RS26975	0.70	-1.0
6,021,102	-		PFLU_RS26975	0.73	+0.6
6,021,102	-		PFLU_RS26975	0.73	-0.3
6,021,248	+		PFLU_RS26975	0.84	+0.5
6,021,248	+		PFLU_RS26975	0.84	-1.5
6,021,248	+		PFLU_RS26975	0.84	-1.9
6,021,248	+		PFLU_RS26975	0.84	+2.3
6,021,248	+		PFLU_RS26975	0.84	-1.6
6,021,248	+		PFLU_RS26975	0.84	-1.0
6,021,248	+		PFLU_RS26975	0.84	+1.2
6,021,248	+		PFLU_RS26975	0.84	+2.0
6,021,248	+		PFLU_RS26975	0.84	+3.3
6,021,249	-		PFLU_RS26975	0.84	-1.7
6,021,249	-		PFLU_RS26975	0.84	-1.5
6,021,249	-		PFLU_RS26975	0.84	+1.8
6,021,249	-		PFLU_RS26975	0.84	+3.2
6,021,249	-		PFLU_RS26975	0.84	-1.7
6,021,249	-		PFLU_RS26975	0.84	-1.2
6,021,249	-		PFLU_RS26975	0.84	+1.7
6,021,249	-		PFLU_RS26975	0.84	+2.2
6,021,304	+		PFLU_RS26975	0.89	+1.5
6,021,305	-		PFLU_RS26975	0.89	+0.7
6,021,514	+				+0.7
6,021,514	+				+0.3
6,021,515	-				+0.1
6,021,515	-				+1.1
6,021,515	-				-2.4
6,021,617	-		PFLU_RS26980	0.19	+1.4
6,021,633	+		PFLU_RS26980	0.21	-0.7
6,021,633	+		PFLU_RS26980	0.21	-0.5
6,021,633	+		PFLU_RS26980	0.21	-2.4
6,021,634	-		PFLU_RS26980	0.21	+1.2
6,021,634	-		PFLU_RS26980	0.21	-2.1
6,021,634	-		PFLU_RS26980	0.21	-0.9
6,021,634	-		PFLU_RS26980	0.21	+0.1
6,021,663	+		PFLU_RS26980	0.24	+0.6
6,021,663	+		PFLU_RS26980	0.24	+1.3
6,021,663	+		PFLU_RS26980	0.24	-0.9
6,021,663	+		PFLU_RS26980	0.24	-0.1
6,021,663	+		PFLU_RS26980	0.24	+0.5
6,021,663	+		PFLU_RS26980	0.24	+0.2
6,021,663	+		PFLU_RS26980	0.24	-1.8
6,021,663	+		PFLU_RS26980	0.24	-1.5
6,021,663	+		PFLU_RS26980	0.24	+1.5
6,021,663	+		PFLU_RS26980	0.24	+2.2
6,021,663	+		PFLU_RS26980	0.24	-2.9
6,021,663	+		PFLU_RS26980	0.24	-2.8
6,021,663	+		PFLU_RS26980	0.24	-0.8
6,021,663	+		PFLU_RS26980	0.24	-1.3
6,021,663	+		PFLU_RS26980	0.24	-0.7
6,021,663	+		PFLU_RS26980	0.24	-1.0
6,021,663	+		PFLU_RS26980	0.24	-1.9
6,021,663	+		PFLU_RS26980	0.24	+1.5
6,021,663	+		PFLU_RS26980	0.24	-1.5
6,021,663	+		PFLU_RS26980	0.24	+1.5
6,021,663	+		PFLU_RS26980	0.24	-2.5
6,021,663	+		PFLU_RS26980	0.24	+0.9
6,021,664	-		PFLU_RS26980	0.24	-0.4
6,021,664	-		PFLU_RS26980	0.24	+1.1
6,021,664	-		PFLU_RS26980	0.24	-1.5
6,021,664	-		PFLU_RS26980	0.24	+2.7
6,021,664	-		PFLU_RS26980	0.24	-2.0
6,021,664	-		PFLU_RS26980	0.24	+2.3
6,021,664	-		PFLU_RS26980	0.24	+1.8
6,021,664	-		PFLU_RS26980	0.24	+2.3
6,021,664	-		PFLU_RS26980	0.24	-2.5
6,021,664	-		PFLU_RS26980	0.24	+0.6
6,021,664	-		PFLU_RS26980	0.24	-0.7
6,021,664	-		PFLU_RS26980	0.24	-0.1
6,021,664	-		PFLU_RS26980	0.24	+1.1
6,021,664	-		PFLU_RS26980	0.24	-2.5
6,021,664	-		PFLU_RS26980	0.24	+1.9
6,021,664	-		PFLU_RS26980	0.24	-1.4
6,021,665	+		PFLU_RS26980	0.24	-0.7
6,021,665	+		PFLU_RS26980	0.24	+3.1
6,021,665	+		PFLU_RS26980	0.24	+2.0
6,021,665	+		PFLU_RS26980	0.24	+2.0
6,021,666	-		PFLU_RS26980	0.24	+2.1
6,021,717	+		PFLU_RS26980	0.29	+0.9
6,021,717	+		PFLU_RS26980	0.29	+1.8
6,021,717	+		PFLU_RS26980	0.29	+1.0
6,021,717	+		PFLU_RS26980	0.29	-0.8
6,021,717	+		PFLU_RS26980	0.29	-1.1
6,021,717	+		PFLU_RS26980	0.29	-0.6
6,021,718	-		PFLU_RS26980	0.30	-2.4
6,021,718	-		PFLU_RS26980	0.30	-0.4
6,021,718	-		PFLU_RS26980	0.30	-1.4
6,021,718	-		PFLU_RS26980	0.30	-1.1
6,021,718	-		PFLU_RS26980	0.30	+3.0
6,021,726	-		PFLU_RS26980	0.30	+3.4
6,021,726	-		PFLU_RS26980	0.30	+1.4
6,021,777	+		PFLU_RS26980	0.36	+0.7
6,021,777	+		PFLU_RS26980	0.36	+0.5
6,021,777	+		PFLU_RS26980	0.36	+1.8
6,021,777	+		PFLU_RS26980	0.36	-0.7
6,021,777	+		PFLU_RS26980	0.36	-1.2
6,021,778	-		PFLU_RS26980	0.36	-0.1
6,021,778	-		PFLU_RS26980	0.36	-0.9
6,021,852	+		PFLU_RS26980	0.44	-0.7
6,021,852	+		PFLU_RS26980	0.44	+1.9
6,021,852	+		PFLU_RS26980	0.44	-1.8
6,021,852	+		PFLU_RS26980	0.44	+0.4
6,021,852	+		PFLU_RS26980	0.44	-1.4
6,021,852	+		PFLU_RS26980	0.44	+0.3
6,021,853	-		PFLU_RS26980	0.44	+1.4
6,021,853	-		PFLU_RS26980	0.44	-2.1
6,021,853	-		PFLU_RS26980	0.44	+2.8
6,021,853	-		PFLU_RS26980	0.44	-2.1
6,021,853	-		PFLU_RS26980	0.44	+2.4
6,021,920	+		PFLU_RS26980	0.51	+0.1
6,021,952	+		PFLU_RS26980	0.54	-0.1
6,021,952	+		PFLU_RS26980	0.54	-1.9
6,021,952	+		PFLU_RS26980	0.54	-0.1
6,021,953	-		PFLU_RS26980	0.54	-0.9
6,021,953	-		PFLU_RS26980	0.54	-1.0
6,021,953	-		PFLU_RS26980	0.54	+2.0
6,021,953	-		PFLU_RS26980	0.54	-1.9
6,021,953	-		PFLU_RS26980	0.54	-2.2
6,021,973	-		PFLU_RS26980	0.56	+1.2
6,022,195	+		PFLU_RS26980	0.79	+2.0
6,022,195	+		PFLU_RS26980	0.79	-1.0
6,022,195	+		PFLU_RS26980	0.79	+2.3
6,022,195	+		PFLU_RS26980	0.79	-0.8
6,022,195	+		PFLU_RS26980	0.79	-1.8
6,022,196	-		PFLU_RS26980	0.80	+0.1
6,022,196	-		PFLU_RS26980	0.80	+3.7
6,022,196	-		PFLU_RS26980	0.80	+2.0
6,022,229	+		PFLU_RS26980	0.83	+2.0
6,022,229	+		PFLU_RS26980	0.83	-0.4
6,022,229	+		PFLU_RS26980	0.83	-1.6
6,022,230	-		PFLU_RS26980	0.83	-0.9
6,022,299	+				+0.1
6,022,299	+				-1.7
6,022,299	+				-2.9
6,022,299	+				+2.8
6,022,299	+				+0.9
6,022,299	+				-1.0
6,022,300	-				-1.6
6,022,300	-				+1.4
6,022,300	-				-1.6
6,022,300	-				+1.2
6,022,300	-				-1.9
6,022,300	-				+3.4
6,022,300	-				+1.4
6,022,300	-				+2.4
6,022,300	-				-0.7
6,022,300	-				+0.9
6,022,300	-				-0.1
6,022,300	-				+0.4
6,022,300	-				+1.2
6,022,300	-				-0.1
6,022,300	-				-2.3
6,022,304	+				-0.4
6,022,304	+				+0.1
6,022,304	+				-0.4
6,022,304	+				-1.7
6,022,304	+				+1.9
6,022,304	+				-0.4
6,022,305	-				+0.1
6,022,305	-				-0.4
6,022,305	-				-2.8
6,022,305	-				-0.6
6,022,305	-				-1.7
6,022,335	+				+1.1
6,022,335	+				-0.2
6,022,335	+				-1.1
6,022,335	+				-1.0
6,022,335	+				-1.9
6,022,335	+				-1.5
6,022,335	+				-1.1
6,022,335	+				-0.1
6,022,336	-				+1.5
6,022,336	-				+1.4
6,022,336	-				+0.3
6,022,336	-				+3.8
6,022,336	-				-2.1
6,022,336	-				-1.6
6,022,336	-				-0.4
6,022,336	-				+0.9
6,022,336	-				+1.1
6,022,443	+				+2.2
6,022,443	+				-0.3
6,022,443	+				-3.1
6,022,443	+				-2.8
6,022,443	+				-0.4
6,022,443	+				-0.1
6,022,443	+				-3.1
6,022,443	+				+0.1
6,022,444	-				+0.3
6,022,444	-				-1.3
6,022,444	-				-1.7
6,022,444	-				-0.9
6,022,458	+				+1.8
6,022,458	+				-0.6
6,022,458	+				+0.9
6,022,458	+				-1.2
6,022,458	+				+1.0
6,022,458	+				-1.4
6,022,458	+				-1.1
6,022,458	+				-1.5
6,022,458	+				+0.5
6,022,458	+				+2.1
6,022,459	-				+2.5
6,022,459	-				-1.1
6,022,459	-				+2.2
6,022,459	-				-1.5
6,022,459	-				-0.1
6,022,459	-				-0.7
6,022,459	-				+2.2
6,022,459	-				-1.0
6,022,459	-				-0.7
6,022,459	-				-0.9
6,022,459	-				+2.9
6,022,459	-				-1.5
6,022,459	-				+0.9
6,022,530	+				-0.9
6,022,530	+				-0.1
6,022,530	+				-0.4
6,022,530	+				-2.0
6,022,530	+				+2.5
6,022,530	+				+2.0
6,022,531	-				-2.1
6,022,531	-				+0.8
6,022,531	-				+2.6
6,022,531	-				+2.5
6,022,531	-				-0.2
6,022,531	-				-0.7
6,022,531	-				+2.1
6,022,531	-				+2.4
6,022,531	-				-2.3
6,022,531	-				-1.5
6,022,531	-				+1.2
6,022,623	+		PFLU_RS26985	0.22	+0.6
6,022,749	+		PFLU_RS26985	0.39	+0.6
6,022,789	+		PFLU_RS26985	0.44	-1.9
6,022,789	+		PFLU_RS26985	0.44	-0.2
6,022,789	+		PFLU_RS26985	0.44	-1.6
6,022,790	-		PFLU_RS26985	0.44	-0.9
6,022,809	+		PFLU_RS26985	0.47	+2.9
6,022,809	+		PFLU_RS26985	0.47	-1.9
6,022,810	-		PFLU_RS26985	0.47	-1.5
6,022,810	-		PFLU_RS26985	0.47	-2.3
6,022,810	-		PFLU_RS26985	0.47	-2.4
6,022,810	-		PFLU_RS26985	0.47	-2.3
6,022,810	-		PFLU_RS26985	0.47	-1.6
6,022,876	-		PFLU_RS26985	0.55	+1.9
6,022,876	-		PFLU_RS26985	0.55	+2.2
6,022,884	+		PFLU_RS26985	0.56	-1.4
6,022,884	+		PFLU_RS26985	0.56	+2.0
6,022,884	+		PFLU_RS26985	0.56	+0.4
6,022,885	-		PFLU_RS26985	0.57	-0.0
6,022,885	-		PFLU_RS26985	0.57	-2.4
6,022,885	-		PFLU_RS26985	0.57	-1.3
6,022,885	-		PFLU_RS26985	0.57	+0.7
6,022,947	+		PFLU_RS26985	0.65	-1.9
6,022,947	+		PFLU_RS26985	0.65	-0.2
6,023,212	+				+0.5
6,023,213	-				-2.0
6,023,213	-				-0.1
6,023,219	+				+0.1
6,023,220	-				-0.7
6,023,230	+				-1.1
6,023,230	+				-1.4
6,023,230	+				-1.2
6,023,230	+				+0.5
6,023,231	-				+0.6
6,023,231	-				+0.5
6,023,231	-				+3.4
6,023,231	-				-2.4
6,023,231	-				+0.1
6,023,231	-				+2.6
6,023,269	+				+0.1
6,023,308	+				-0.1
6,023,308	+				-0.4
6,023,308	+				+1.3
6,023,308	+				+1.5
6,023,308	+				+0.3
6,023,308	+				+0.9
6,023,308	+				-0.1
6,023,308	+				+0.1
6,023,308	+				+2.6
6,023,308	+				+1.0
6,023,308	+				+1.2
6,023,308	+				-1.4
6,023,309	-				-2.4
6,023,309	-				+1.7
6,023,309	-				-0.9
6,023,309	-				-1.0
6,023,357	+		PFLU_RS26990	0.14	-3.1
6,023,358	-		PFLU_RS26990	0.14	+1.0