Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26365

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
5,896,887	+		PFLU_RS26360	0.12	+0.1
5,896,887	+		PFLU_RS26360	0.12	-0.2
5,896,887	+		PFLU_RS26360	0.12	+0.4
5,896,888	-		PFLU_RS26360	0.12	+0.1
5,896,894	-		PFLU_RS26360	0.12	-1.1
5,896,894	-		PFLU_RS26360	0.12	-1.4
5,896,976	+		PFLU_RS26360	0.22	+2.8
5,896,995	+		PFLU_RS26360	0.24	-1.6
5,896,995	+		PFLU_RS26360	0.24	-0.8
5,896,996	-		PFLU_RS26360	0.24	-3.8
5,896,996	-		PFLU_RS26360	0.24	+1.5
5,896,996	-		PFLU_RS26360	0.24	-3.0
5,896,996	-		PFLU_RS26360	0.24	-0.5
5,897,249	+		PFLU_RS26360	0.54	-2.9
5,897,250	-		PFLU_RS26360	0.54	-0.0
5,897,250	-		PFLU_RS26360	0.54	+1.5
5,897,250	-		PFLU_RS26360	0.54	+0.4
5,897,446	+		PFLU_RS26360	0.78	-2.3
5,897,446	+		PFLU_RS26360	0.78	+1.6
5,897,446	+		PFLU_RS26360	0.78	-1.1
5,897,446	+		PFLU_RS26360	0.78	-0.4
5,897,447	-		PFLU_RS26360	0.78	-1.6
5,897,466	+		PFLU_RS26360	0.80	-2.1
5,897,466	+		PFLU_RS26360	0.80	-3.4
5,897,466	+		PFLU_RS26360	0.80	+2.0
5,897,467	-		PFLU_RS26360	0.80	-0.7
5,897,467	-		PFLU_RS26360	0.80	+1.1
5,897,467	-		PFLU_RS26360	0.80	-2.1
5,897,467	-		PFLU_RS26360	0.80	+0.8
5,897,630	+				+0.5
5,897,630	+				-0.9
5,897,630	+				-0.4
5,897,630	+				-1.7
5,897,630	+				+0.6
5,897,630	+				-1.6
5,897,630	+				+2.5
5,897,630	+				-2.6
5,897,631	-				+1.4
5,897,631	-				+0.5
5,897,631	-				-0.6
5,897,631	-				+1.5
5,897,631	-				-1.1
5,897,631	-				+1.5
5,897,631	-				-2.7
5,897,631	-				-1.1
5,897,631	-				-1.1
5,897,631	-				-0.5
5,897,631	-				-1.6
5,897,700	+				+0.7
5,897,700	+				+0.2
5,897,700	+				+0.8
5,897,700	+				-0.2
5,897,700	+				+1.9
5,897,700	+				+0.9
5,897,701	-				+1.5
5,897,701	-				-1.4
5,897,768	+				-1.0
5,897,768	+				-0.4
5,897,768	+				-2.5
5,897,769	-				+1.5
5,897,769	-				-0.3
5,897,769	-				-1.3
5,897,784	+				+3.4
5,897,872	+		PFLU_RS26365	0.16	+2.1
5,897,872	+		PFLU_RS26365	0.16	+0.4
5,897,872	+		PFLU_RS26365	0.16	+0.6
5,897,872	+		PFLU_RS26365	0.16	+1.4
5,897,872	+		PFLU_RS26365	0.16	+1.3
5,897,872	+		PFLU_RS26365	0.16	+2.4
5,897,872	+		PFLU_RS26365	0.16	-1.9
5,897,872	+		PFLU_RS26365	0.16	-1.1
5,897,872	+		PFLU_RS26365	0.16	-1.3
5,897,873	-		PFLU_RS26365	0.16	+4.3
5,897,873	-		PFLU_RS26365	0.16	+3.1
5,897,873	-		PFLU_RS26365	0.16	+2.7
5,897,873	-		PFLU_RS26365	0.16	-1.5
5,897,873	-		PFLU_RS26365	0.16	+0.9
5,897,873	-		PFLU_RS26365	0.16	-1.7
5,897,873	-		PFLU_RS26365	0.16	+1.5
5,897,873	-		PFLU_RS26365	0.16	+1.2
5,897,873	-		PFLU_RS26365	0.16	+0.5
5,898,038	+		PFLU_RS26365	0.42	-0.3
5,898,038	+		PFLU_RS26365	0.42	-1.1
5,898,038	+		PFLU_RS26365	0.42	+1.2
5,898,038	+		PFLU_RS26365	0.42	-1.9
5,898,038	+		PFLU_RS26365	0.42	-2.8
5,898,038	+		PFLU_RS26365	0.42	+0.6
5,898,038	+		PFLU_RS26365	0.42	+2.6
5,898,038	+		PFLU_RS26365	0.42	-2.0
5,898,038	+		PFLU_RS26365	0.42	+2.9
5,898,038	+		PFLU_RS26365	0.42	-2.1
5,898,039	-		PFLU_RS26365	0.42	+0.6
5,898,039	-		PFLU_RS26365	0.42	-0.5
5,898,039	-		PFLU_RS26365	0.42	+0.1
5,898,039	-		PFLU_RS26365	0.42	+1.4
5,898,039	-		PFLU_RS26365	0.42	+0.2
5,898,039	-		PFLU_RS26365	0.42	-0.2
5,898,039	-		PFLU_RS26365	0.42	+1.7
5,898,039	-		PFLU_RS26365	0.42	-0.8
5,898,039	-		PFLU_RS26365	0.42	+2.1
5,898,039	-		PFLU_RS26365	0.42	+3.0
5,898,039	-		PFLU_RS26365	0.42	-1.1
5,898,042	+		PFLU_RS26365	0.42	-0.8
5,898,042	+		PFLU_RS26365	0.42	-2.1
5,898,043	-		PFLU_RS26365	0.42	-0.0
5,898,043	-		PFLU_RS26365	0.42	+0.1
5,898,043	-		PFLU_RS26365	0.42	+2.9
5,898,137	-		PFLU_RS26365	0.57	+0.9
5,898,137	-		PFLU_RS26365	0.57	-1.1
5,898,198	+		PFLU_RS26365	0.67	-2.4
5,898,198	+		PFLU_RS26365	0.67	-0.2
5,898,198	+		PFLU_RS26365	0.67	+0.2
5,898,198	+		PFLU_RS26365	0.67	+1.7
5,898,198	+		PFLU_RS26365	0.67	-2.7
5,898,199	-		PFLU_RS26365	0.67	+1.1
5,898,199	-		PFLU_RS26365	0.67	+2.3
5,898,199	-		PFLU_RS26365	0.67	+2.2
5,898,222	+		PFLU_RS26365	0.70	+0.1
5,898,222	+		PFLU_RS26365	0.70	-0.9
5,898,222	+		PFLU_RS26365	0.70	+1.4
5,898,222	+		PFLU_RS26365	0.70	+2.4
5,898,222	+		PFLU_RS26365	0.70	+1.4
5,898,222	+		PFLU_RS26365	0.70	+0.2
5,898,222	+		PFLU_RS26365	0.70	+2.1
5,898,222	+		PFLU_RS26365	0.70	-0.3
5,898,222	+		PFLU_RS26365	0.70	-1.6
5,898,222	+		PFLU_RS26365	0.70	-0.6
5,898,222	+		PFLU_RS26365	0.70	+1.0
5,898,222	+		PFLU_RS26365	0.70	+0.9
5,898,223	-		PFLU_RS26365	0.70	-1.0
5,898,223	-		PFLU_RS26365	0.70	-0.3
5,898,223	-		PFLU_RS26365	0.70	+0.4
5,898,223	-		PFLU_RS26365	0.70	+0.9
5,898,223	-		PFLU_RS26365	0.70	-0.6
5,898,223	-		PFLU_RS26365	0.70	+0.4
5,898,223	-		PFLU_RS26365	0.70	-0.3
5,898,223	-		PFLU_RS26365	0.70	-2.1
5,898,235	+		PFLU_RS26365	0.72	-0.8
5,898,235	+		PFLU_RS26365	0.72	-1.6
5,898,235	+		PFLU_RS26365	0.72	-1.3
5,898,236	-		PFLU_RS26365	0.72	+2.7
5,898,236	-		PFLU_RS26365	0.72	+2.2
5,898,246	+		PFLU_RS26365	0.74	+1.0
5,898,246	+		PFLU_RS26365	0.74	+0.6
5,898,246	+		PFLU_RS26365	0.74	-0.5
5,898,246	+		PFLU_RS26365	0.74	-0.3
5,898,246	+		PFLU_RS26365	0.74	+3.3
5,898,246	+		PFLU_RS26365	0.74	-2.7
5,898,246	+		PFLU_RS26365	0.74	+0.1
5,898,247	-		PFLU_RS26365	0.74	-0.5
5,898,247	-		PFLU_RS26365	0.74	+0.9
5,898,247	-		PFLU_RS26365	0.74	-1.2
5,898,247	-		PFLU_RS26365	0.74	+0.9
5,898,247	-		PFLU_RS26365	0.74	+2.2
5,898,247	-		PFLU_RS26365	0.74	+2.5
5,898,249	+		PFLU_RS26365	0.74	+2.5
5,898,249	+		PFLU_RS26365	0.74	+2.7
5,898,250	-		PFLU_RS26365	0.75	+2.1
5,898,250	-		PFLU_RS26365	0.75	+1.0
5,898,250	-		PFLU_RS26365	0.75	+0.6
5,898,250	-		PFLU_RS26365	0.75	-1.6
5,898,252	+		PFLU_RS26365	0.75	+1.8
5,898,252	+		PFLU_RS26365	0.75	-3.0
5,898,252	+		PFLU_RS26365	0.75	-1.9
5,898,252	+		PFLU_RS26365	0.75	-0.4
5,898,252	+		PFLU_RS26365	0.75	-1.5
5,898,252	+		PFLU_RS26365	0.75	+0.1
5,898,252	+		PFLU_RS26365	0.75	-0.4
5,898,252	+		PFLU_RS26365	0.75	-1.1
5,898,252	+		PFLU_RS26365	0.75	+1.9
5,898,252	+		PFLU_RS26365	0.75	+1.5
5,898,252	+		PFLU_RS26365	0.75	-0.9
5,898,252	+		PFLU_RS26365	0.75	+0.7
5,898,252	+		PFLU_RS26365	0.75	+2.2
5,898,252	+		PFLU_RS26365	0.75	-1.3
5,898,252	+		PFLU_RS26365	0.75	+0.2
5,898,252	+		PFLU_RS26365	0.75	+1.8
5,898,252	+		PFLU_RS26365	0.75	-2.4
5,898,252	+		PFLU_RS26365	0.75	+0.4
5,898,252	+		PFLU_RS26365	0.75	-0.9
5,898,252	+		PFLU_RS26365	0.75	+0.4
5,898,252	+		PFLU_RS26365	0.75	+1.4
5,898,252	+		PFLU_RS26365	0.75	+0.6
5,898,252	+		PFLU_RS26365	0.75	-0.7
5,898,252	+		PFLU_RS26365	0.75	-2.2
5,898,252	+		PFLU_RS26365	0.75	+2.9
5,898,252	+		PFLU_RS26365	0.75	-0.4
5,898,252	+		PFLU_RS26365	0.75	+0.9
5,898,252	+		PFLU_RS26365	0.75	-0.9
5,898,252	+		PFLU_RS26365	0.75	-1.1
5,898,252	+		PFLU_RS26365	0.75	+3.1
5,898,252	+		PFLU_RS26365	0.75	+2.0
5,898,252	+		PFLU_RS26365	0.75	+0.8
5,898,252	+		PFLU_RS26365	0.75	-1.3
5,898,252	+		PFLU_RS26365	0.75	+2.4
5,898,253	-		PFLU_RS26365	0.75	-2.2
5,898,253	-		PFLU_RS26365	0.75	+2.8
5,898,253	-		PFLU_RS26365	0.75	-0.8
5,898,253	-		PFLU_RS26365	0.75	+1.4
5,898,253	-		PFLU_RS26365	0.75	-2.9
5,898,253	-		PFLU_RS26365	0.75	-1.4
5,898,253	-		PFLU_RS26365	0.75	+1.5
5,898,253	-		PFLU_RS26365	0.75	+0.7
5,898,253	-		PFLU_RS26365	0.75	+2.5
5,898,253	-		PFLU_RS26365	0.75	+0.4
5,898,253	-		PFLU_RS26365	0.75	+3.1
5,898,253	-		PFLU_RS26365	0.75	+2.2
5,898,253	-		PFLU_RS26365	0.75	-1.9
5,898,253	-		PFLU_RS26365	0.75	+3.1
5,898,253	-		PFLU_RS26365	0.75	-2.1
5,898,253	-		PFLU_RS26365	0.75	+0.1
5,898,253	-		PFLU_RS26365	0.75	-1.6
5,898,253	-		PFLU_RS26365	0.75	+1.1
5,898,253	-		PFLU_RS26365	0.75	-1.0
5,898,253	-		PFLU_RS26365	0.75	+0.2
5,898,253	-		PFLU_RS26365	0.75	+1.9
5,898,253	-		PFLU_RS26365	0.75	-1.6
5,898,253	-		PFLU_RS26365	0.75	+0.3
5,898,253	-		PFLU_RS26365	0.75	+2.7
5,898,253	-		PFLU_RS26365	0.75	+0.9
5,898,253	-		PFLU_RS26365	0.75	-1.5
5,898,253	-		PFLU_RS26365	0.75	+0.8
5,898,253	-		PFLU_RS26365	0.75	+0.3
5,898,350	+				+2.6
5,898,350	+				+0.7
5,898,350	+				+2.8
5,898,351	-				-1.9
5,898,351	-				+0.5
5,898,433	+				+0.8
5,898,433	+				-0.8
5,898,433	+				+0.7
5,898,434	-				-1.1
5,898,491	+				-1.4
5,898,492	-				-2.0
5,898,492	-				-1.8
5,898,493	+				-0.1
5,898,493	+				+1.6
5,898,493	+				+2.4
5,898,493	+				+2.0
5,898,493	+				-0.7
5,898,493	+				-1.0
5,898,494	-				+0.4
5,898,494	-				-2.7
5,898,494	-				+0.1
5,898,494	-				+3.2
5,898,494	-				-0.9
5,898,578	+				+0.8
5,898,578	+				-0.8
5,898,579	-				-2.5
5,898,579	-				-0.9
5,898,635	+				+0.3
5,898,635	+				+1.1
5,898,635	+				-0.5
5,898,636	-				-1.7
5,898,636	-				+0.4
5,898,636	-				-0.4
5,898,646	+				+0.1
5,898,647	-				-0.2
5,898,647	-				-0.8
5,898,647	-				-3.4
5,898,674	+				+0.6
5,898,675	-				-0.3
5,898,675	-				-0.4
5,898,675	-				+0.3
5,898,675	-				-0.6
5,898,686	+		PFLU_RS26370	0.10	-1.1
5,898,686	+		PFLU_RS26370	0.10	-0.6
5,898,686	+		PFLU_RS26370	0.10	-2.8
5,898,686	+		PFLU_RS26370	0.10	+0.8
5,898,686	+		PFLU_RS26370	0.10	-2.5
5,898,686	+		PFLU_RS26370	0.10	-0.8
5,898,686	+		PFLU_RS26370	0.10	-0.6
5,898,686	+		PFLU_RS26370	0.10	-1.4
5,898,686	+		PFLU_RS26370	0.10	+0.2
5,898,686	+		PFLU_RS26370	0.10	-0.2
5,898,686	+		PFLU_RS26370	0.10	+0.6
5,898,686	+		PFLU_RS26370	0.10	-2.2
5,898,686	+		PFLU_RS26370	0.10	-1.6
5,898,686	+		PFLU_RS26370	0.10	+2.7
5,898,686	+		PFLU_RS26370	0.10	-2.0
5,898,686	+		PFLU_RS26370	0.10	-0.9
5,898,687	-		PFLU_RS26370	0.10	-1.9
5,898,687	-		PFLU_RS26370	0.10	-0.5
5,898,687	-		PFLU_RS26370	0.10	+0.1
5,898,687	-		PFLU_RS26370	0.10	-1.9
5,898,687	-		PFLU_RS26370	0.10	-0.9
5,898,687	-		PFLU_RS26370	0.10	-1.3
5,898,687	-		PFLU_RS26370	0.10	-3.4
5,898,687	-		PFLU_RS26370	0.10	+0.1
5,898,687	-		PFLU_RS26370	0.10	-1.2
5,898,687	-		PFLU_RS26370	0.10	-0.5
5,898,687	-		PFLU_RS26370	0.10	+0.1
5,898,687	-		PFLU_RS26370	0.10	-2.2
5,898,687	-		PFLU_RS26370	0.10	+0.9
5,898,687	-		PFLU_RS26370	0.10	+0.0
5,898,687	-		PFLU_RS26370	0.10	+0.1
5,898,689	+		PFLU_RS26370	0.10	-1.6
5,898,689	+		PFLU_RS26370	0.10	-1.3
5,898,689	+		PFLU_RS26370	0.10	-1.4
5,898,690	-		PFLU_RS26370	0.11	-1.2
5,898,690	-		PFLU_RS26370	0.11	-1.7
5,898,690	-		PFLU_RS26370	0.11	+0.7
5,898,690	-		PFLU_RS26370	0.11	+1.4
5,898,746	+		PFLU_RS26370	0.13	+1.3
5,898,746	+		PFLU_RS26370	0.13	-2.5
5,898,746	+		PFLU_RS26370	0.13	-1.8
5,898,746	+		PFLU_RS26370	0.13	+0.4
5,898,746	+		PFLU_RS26370	0.13	-0.5
5,898,747	-		PFLU_RS26370	0.14	+1.2
5,898,747	-		PFLU_RS26370	0.14	-1.1
5,898,747	-		PFLU_RS26370	0.14	+1.9
5,898,747	-		PFLU_RS26370	0.14	+0.8
5,898,747	-		PFLU_RS26370	0.14	+1.2
5,898,747	-		PFLU_RS26370	0.14	-3.1
5,898,747	-		PFLU_RS26370	0.14	+0.6
5,898,749	+		PFLU_RS26370	0.14	-0.5
5,898,749	+		PFLU_RS26370	0.14	-1.5
5,898,749	+		PFLU_RS26370	0.14	-0.2
5,898,749	+		PFLU_RS26370	0.14	-1.4
5,898,749	+		PFLU_RS26370	0.14	-1.2
5,898,749	+		PFLU_RS26370	0.14	-1.0
5,898,749	+		PFLU_RS26370	0.14	+0.6
5,898,749	+		PFLU_RS26370	0.14	-0.1
5,898,750	-		PFLU_RS26370	0.14	+0.6
5,898,750	-		PFLU_RS26370	0.14	-3.4
5,898,750	-		PFLU_RS26370	0.14	-2.6
5,898,750	-		PFLU_RS26370	0.14	-1.1
5,898,750	-		PFLU_RS26370	0.14	-0.1
5,898,750	-		PFLU_RS26370	0.14	+0.3
5,898,750	-		PFLU_RS26370	0.14	-1.4
5,898,762	+		PFLU_RS26370	0.14	+0.7
5,898,762	+		PFLU_RS26370	0.14	-0.4
5,898,763	-		PFLU_RS26370	0.14	+1.3
5,898,857	+		PFLU_RS26370	0.19	+0.3
5,898,858	-		PFLU_RS26370	0.19	-0.4
5,898,903	+		PFLU_RS26370	0.22	-0.9
5,898,903	+		PFLU_RS26370	0.22	-1.5
5,898,904	-		PFLU_RS26370	0.22	-2.1
5,898,904	-		PFLU_RS26370	0.22	-0.9
5,898,904	-		PFLU_RS26370	0.22	-1.5
5,898,904	-		PFLU_RS26370	0.22	-1.7
5,898,965	+		PFLU_RS26370	0.25	-0.3
5,899,019	+		PFLU_RS26370	0.28	+0.6
5,899,020	-		PFLU_RS26370	0.28	-1.1
5,899,020	-		PFLU_RS26370	0.28	-0.9
5,899,020	-		PFLU_RS26370	0.28	-0.3
5,899,020	-		PFLU_RS26370	0.28	+0.7
5,899,020	-		PFLU_RS26370	0.28	-0.8
5,899,020	-		PFLU_RS26370	0.28	+0.1
5,899,133	+		PFLU_RS26370	0.34	-0.8
5,899,133	+		PFLU_RS26370	0.34	-0.6
5,899,134	-		PFLU_RS26370	0.34	-1.3
5,899,134	-		PFLU_RS26370	0.34	+2.4
5,899,134	-		PFLU_RS26370	0.34	+3.0
5,899,163	+		PFLU_RS26370	0.35	-1.0
5,899,163	+		PFLU_RS26370	0.35	+2.2
5,899,163	+		PFLU_RS26370	0.35	-1.2
5,899,163	+		PFLU_RS26370	0.35	-0.7
5,899,163	+		PFLU_RS26370	0.35	+0.1
5,899,163	+		PFLU_RS26370	0.35	+0.7
5,899,164	-		PFLU_RS26370	0.35	+1.8
5,899,164	-		PFLU_RS26370	0.35	+0.5
5,899,164	-		PFLU_RS26370	0.35	+0.4
5,899,247	+		PFLU_RS26370	0.40	-0.2
5,899,247	+		PFLU_RS26370	0.40	+0.9
5,899,247	+		PFLU_RS26370	0.40	-0.4
5,899,247	+		PFLU_RS26370	0.40	-0.8
5,899,247	+		PFLU_RS26370	0.40	-2.7
5,899,247	+		PFLU_RS26370	0.40	-0.1
5,899,248	-		PFLU_RS26370	0.40	+1.1
5,899,248	-		PFLU_RS26370	0.40	+2.4
5,899,248	-		PFLU_RS26370	0.40	+5.1
5,899,248	-		PFLU_RS26370	0.40	-1.1
5,899,349	+		PFLU_RS26370	0.45	-2.3
5,899,350	-		PFLU_RS26370	0.45	+1.4
5,899,350	-		PFLU_RS26370	0.45	+0.4