Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26355

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
5,895,362	+		PFLU_RS26345	0.81	-0.6
5,895,362	+		PFLU_RS26345	0.81	+0.6
5,895,362	+		PFLU_RS26345	0.81	-1.3
5,895,362	+		PFLU_RS26345	0.81	-2.0
5,895,362	+		PFLU_RS26345	0.81	-1.6
5,895,362	+		PFLU_RS26345	0.81	-1.2
5,895,362	+		PFLU_RS26345	0.81	-1.3
5,895,362	+		PFLU_RS26345	0.81	-1.9
5,895,362	+		PFLU_RS26345	0.81	-0.1
5,895,362	+		PFLU_RS26345	0.81	+1.1
5,895,362	+		PFLU_RS26345	0.81	-1.2
5,895,362	+		PFLU_RS26345	0.81	-1.8
5,895,363	-		PFLU_RS26345	0.81	+1.5
5,895,363	-		PFLU_RS26345	0.81	-2.5
5,895,363	-		PFLU_RS26345	0.81	+1.2
5,895,363	-		PFLU_RS26345	0.81	-1.1
5,895,363	-		PFLU_RS26345	0.81	+0.1
5,895,363	-		PFLU_RS26345	0.81	-0.2
5,895,363	-		PFLU_RS26345	0.81	+0.2
5,895,543	+				-1.7
5,895,543	+				+0.1
5,895,544	-				-1.2
5,895,573	-				-0.2
5,895,573	-				+0.7
5,895,576	+				-1.1
5,895,576	+				+1.6
5,895,576	+				+2.6
5,895,576	+				-3.3
5,895,576	+				-0.4
5,895,576	+				+1.7
5,895,576	+				+0.7
5,895,576	+				+2.0
5,895,576	+				+3.1
5,895,576	+				-1.4
5,895,576	+				-0.2
5,895,576	+				-1.8
5,895,576	+				-1.1
5,895,576	+				+2.5
5,895,576	+				+0.6
5,895,576	+				-1.5
5,895,576	+				+0.1
5,895,576	+				-0.2
5,895,576	+				-1.4
5,895,577	-				-0.6
5,895,577	-				+0.5
5,895,577	-				+1.3
5,895,577	-				-0.9
5,895,577	-				-0.4
5,895,577	-				-2.9
5,895,577	-				+0.5
5,895,577	-				+1.8
5,895,577	-				+1.7
5,895,577	-				-0.3
5,895,577	-				-0.9
5,895,577	-				+2.6
5,895,577	-				-1.7
5,895,577	-				+2.6
5,895,577	-				-0.8
5,895,662	+				-0.3
5,895,662	+				-0.4
5,895,662	+				+0.5
5,895,663	-				-0.2
5,895,663	-				-0.2
5,895,663	-				-1.1
5,895,663	-				+1.9
5,895,777	+		PFLU_RS26350	0.31	+0.2
5,895,778	-		PFLU_RS26350	0.32	+5.3
5,895,778	-		PFLU_RS26350	0.32	+1.8
5,895,927	+		PFLU_RS26350	0.60	+0.3
5,895,927	+		PFLU_RS26350	0.60	-1.9
5,895,927	+		PFLU_RS26350	0.60	+0.8
5,895,928	-		PFLU_RS26350	0.60	-0.4
5,895,928	-		PFLU_RS26350	0.60	-2.9
5,895,928	-		PFLU_RS26350	0.60	-0.2
5,895,959	+		PFLU_RS26350	0.66	+0.7
5,895,959	+		PFLU_RS26350	0.66	-1.6
5,895,960	-		PFLU_RS26350	0.66	+1.5
5,895,960	-		PFLU_RS26350	0.66	-2.2
5,895,965	+		PFLU_RS26350	0.67	-0.8
5,895,965	+		PFLU_RS26350	0.67	-1.4
5,895,966	-		PFLU_RS26350	0.68	-2.2
5,895,966	-		PFLU_RS26350	0.68	-0.5
5,896,060	+		PFLU_RS26350	0.86	-0.9
5,896,060	+		PFLU_RS26350	0.86	-1.7
5,896,061	-		PFLU_RS26350	0.86	-3.1
5,896,061	-		PFLU_RS26350	0.86	+1.8
5,896,090	-				-0.4
5,896,174	+				+0.1
5,896,174	+				-1.0
5,896,174	+				-0.6
5,896,174	+				-0.8
5,896,175	-				-1.4
5,896,175	-				+2.7
5,896,175	-				-2.0
5,896,175	-				-1.5
5,896,175	-				-0.2
5,896,175	-				+1.8
5,896,175	-				+0.7
5,896,205	-				-0.8
5,896,208	+				+0.9
5,896,208	+				-1.5
5,896,208	+				-1.9
5,896,208	+				-1.3
5,896,209	-				-0.2
5,896,209	-				-0.6
5,896,209	-				-0.5
5,896,209	-				-0.4
5,896,209	-				-0.9
5,896,209	-				-2.0
5,896,209	-				+0.8
5,896,209	-				+1.6
5,896,209	-				-1.4
5,896,209	-				-1.7
5,896,209	-				-0.2
5,896,239	+				-1.4
5,896,240	-				+2.4
5,896,322	+				-0.6
5,896,322	+				-0.4
5,896,322	+				+0.1
5,896,322	+				+1.8
5,896,322	+				+2.2
5,896,322	+				-3.0
5,896,322	+				-0.4
5,896,322	+				-0.6
5,896,322	+				-0.7
5,896,322	+				+1.4
5,896,322	+				-0.0
5,896,322	+				+2.0
5,896,322	+				+1.1
5,896,322	+				+2.6
5,896,323	-				-2.4
5,896,323	-				-2.3
5,896,323	-				-1.7
5,896,323	-				-2.0
5,896,323	-				-0.9
5,896,323	-				+0.7
5,896,323	-				-0.5
5,896,323	-				+0.1
5,896,341	+				+0.8
5,896,341	+				-2.0
5,896,341	+				+1.3
5,896,341	+				+1.1
5,896,342	-				+1.1
5,896,342	-				+1.0
5,896,342	-				+0.6
5,896,411	+		PFLU_RS26355	0.15	-2.6
5,896,411	+		PFLU_RS26355	0.15	-1.1
5,896,411	+		PFLU_RS26355	0.15	+0.3
5,896,411	+		PFLU_RS26355	0.15	+1.1
5,896,411	+		PFLU_RS26355	0.15	-0.9
5,896,411	+		PFLU_RS26355	0.15	-0.1
5,896,411	+		PFLU_RS26355	0.15	-0.3
5,896,411	+		PFLU_RS26355	0.15	-0.6
5,896,411	+		PFLU_RS26355	0.15	+1.9
5,896,411	+		PFLU_RS26355	0.15	-2.2
5,896,411	+		PFLU_RS26355	0.15	+2.5
5,896,411	+		PFLU_RS26355	0.15	+0.4
5,896,412	-		PFLU_RS26355	0.16	+0.6
5,896,412	-		PFLU_RS26355	0.16	-0.9
5,896,412	-		PFLU_RS26355	0.16	+0.4
5,896,412	-		PFLU_RS26355	0.16	+0.3
5,896,412	-		PFLU_RS26355	0.16	-0.1
5,896,412	-		PFLU_RS26355	0.16	+1.9
5,896,412	-		PFLU_RS26355	0.16	-1.8
5,896,412	-		PFLU_RS26355	0.16	+1.1
5,896,514	+		PFLU_RS26355	0.38	+0.1
5,896,738	+		PFLU_RS26355	0.88	-1.7
5,896,738	+		PFLU_RS26355	0.88	+1.5
5,896,739	-		PFLU_RS26355	0.88	-2.0
5,896,887	+		PFLU_RS26360	0.12	+0.1
5,896,887	+		PFLU_RS26360	0.12	-0.2
5,896,887	+		PFLU_RS26360	0.12	+0.4
5,896,888	-		PFLU_RS26360	0.12	+0.1
5,896,894	-		PFLU_RS26360	0.12	-1.1
5,896,894	-		PFLU_RS26360	0.12	-1.4
5,896,976	+		PFLU_RS26360	0.22	+2.8
5,896,995	+		PFLU_RS26360	0.24	-1.6
5,896,995	+		PFLU_RS26360	0.24	-0.8
5,896,996	-		PFLU_RS26360	0.24	-3.8
5,896,996	-		PFLU_RS26360	0.24	+1.5
5,896,996	-		PFLU_RS26360	0.24	-3.0
5,896,996	-		PFLU_RS26360	0.24	-0.5
5,897,249	+		PFLU_RS26360	0.54	-2.9
5,897,250	-		PFLU_RS26360	0.54	-0.0
5,897,250	-		PFLU_RS26360	0.54	+1.5
5,897,250	-		PFLU_RS26360	0.54	+0.4
5,897,446	+		PFLU_RS26360	0.78	-2.3
5,897,446	+		PFLU_RS26360	0.78	+1.6
5,897,446	+		PFLU_RS26360	0.78	-1.1
5,897,446	+		PFLU_RS26360	0.78	-0.4
5,897,447	-		PFLU_RS26360	0.78	-1.6
5,897,466	+		PFLU_RS26360	0.80	-2.1
5,897,466	+		PFLU_RS26360	0.80	-3.4
5,897,466	+		PFLU_RS26360	0.80	+2.0
5,897,467	-		PFLU_RS26360	0.80	-0.7
5,897,467	-		PFLU_RS26360	0.80	+1.1
5,897,467	-		PFLU_RS26360	0.80	-2.1
5,897,467	-		PFLU_RS26360	0.80	+0.8
5,897,630	+				+0.5
5,897,630	+				-0.9
5,897,630	+				-0.4
5,897,630	+				-1.7
5,897,630	+				+0.6
5,897,630	+				-1.6
5,897,630	+				+2.5
5,897,630	+				-2.6
5,897,631	-				+1.4
5,897,631	-				+0.5
5,897,631	-				-0.6
5,897,631	-				+1.5
5,897,631	-				-1.1
5,897,631	-				+1.5
5,897,631	-				-2.7
5,897,631	-				-1.1
5,897,631	-				-1.1
5,897,631	-				-0.5
5,897,631	-				-1.6
5,897,700	+				+0.7
5,897,700	+				+0.2
5,897,700	+				+0.8
5,897,700	+				-0.2
5,897,700	+				+1.9
5,897,700	+				+0.9
5,897,701	-				+1.5
5,897,701	-				-1.4
5,897,768	+				-1.0
5,897,768	+				-0.4
5,897,768	+				-2.5
5,897,769	-				+1.5
5,897,769	-				-0.3
5,897,769	-				-1.3
5,897,784	+				+3.4