Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS26040

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
5,814,125	+				-0.8
5,814,125	+				+1.4
5,814,125	+				-1.1
5,814,125	+				+1.0
5,814,125	+				+2.8
5,814,125	+				-2.3
5,814,125	+				-0.1
5,814,125	+				-0.7
5,814,126	-				-1.6
5,814,126	-				+2.3
5,814,126	-				+1.3
5,814,126	-				+0.3
5,814,126	-				-1.5
5,814,126	-				-2.2
5,814,126	-				-1.4
5,814,129	-				-2.7
5,814,129	-				+0.5
5,814,129	-				-1.8
5,814,129	-				-0.7
5,814,129	-				+3.3
5,814,129	-				-0.1
5,814,129	-				+2.3
5,814,129	-				-1.8
5,814,129	-				-0.5
5,814,129	-				+1.5
5,814,144	+				+1.1
5,814,144	+				+1.3
5,814,144	+				+1.9
5,814,144	+				+0.4
5,814,144	+				+2.2
5,814,144	+				+1.1
5,814,145	-				+0.1
5,814,145	-				-1.3
5,814,145	-				-0.6
5,814,145	-				-2.2
5,814,145	-				-0.7
5,814,145	-				-2.3
5,814,157	+				+0.7
5,814,158	-				-0.5
5,814,175	+				+1.5
5,814,176	-				-0.1
5,814,297	+		PFLU_RS26035	0.44	+0.0
5,814,297	+		PFLU_RS26035	0.44	+0.8
5,814,297	+		PFLU_RS26035	0.44	+2.4
5,814,297	+		PFLU_RS26035	0.44	+0.0
5,814,297	+		PFLU_RS26035	0.44	+1.5
5,814,297	+		PFLU_RS26035	0.44	+1.2
5,814,297	+		PFLU_RS26035	0.44	-2.0
5,814,297	+		PFLU_RS26035	0.44	+2.2
5,814,298	-		PFLU_RS26035	0.45	-1.5
5,814,298	-		PFLU_RS26035	0.45	+2.2
5,814,298	-		PFLU_RS26035	0.45	+3.7
5,814,298	-		PFLU_RS26035	0.45	+1.0
5,814,298	-		PFLU_RS26035	0.45	-0.8
5,814,298	-		PFLU_RS26035	0.45	+1.4
5,814,298	-		PFLU_RS26035	0.45	+2.0
5,814,317	+		PFLU_RS26035	0.51	-0.6
5,814,318	-		PFLU_RS26035	0.51	+1.0
5,814,318	-		PFLU_RS26035	0.51	+0.2
5,814,363	+		PFLU_RS26035	0.66	-1.4
5,814,363	+		PFLU_RS26035	0.66	+1.8
5,814,363	+		PFLU_RS26035	0.66	+2.6
5,814,363	+		PFLU_RS26035	0.66	+2.7
5,814,363	+		PFLU_RS26035	0.66	-0.3
5,814,363	+		PFLU_RS26035	0.66	-0.9
5,814,363	+		PFLU_RS26035	0.66	-0.2
5,814,363	+		PFLU_RS26035	0.66	+1.0
5,814,364	-		PFLU_RS26035	0.66	+3.2
5,814,364	-		PFLU_RS26035	0.66	-1.4
5,814,364	-		PFLU_RS26035	0.66	+0.3
5,814,364	-		PFLU_RS26035	0.66	+3.8
5,814,364	-		PFLU_RS26035	0.66	+2.2
5,814,364	-		PFLU_RS26035	0.66	+1.1
5,814,364	-		PFLU_RS26035	0.66	+2.3
5,814,366	+		PFLU_RS26035	0.67	-3.1
5,814,366	+		PFLU_RS26035	0.67	-1.5
5,814,366	+		PFLU_RS26035	0.67	-0.7
5,814,366	+		PFLU_RS26035	0.67	-0.7
5,814,367	-		PFLU_RS26035	0.67	-2.7
5,814,367	-		PFLU_RS26035	0.67	-1.0
5,814,367	-		PFLU_RS26035	0.67	+0.3
5,814,367	-		PFLU_RS26035	0.67	-1.4
5,814,367	-		PFLU_RS26035	0.67	-1.9
5,814,367	-		PFLU_RS26035	0.67	-0.5
5,814,542	+				-0.3
5,814,542	+				+1.5
5,814,542	+				+1.0
5,814,543	-				-0.2
5,814,543	-				-0.8
5,814,543	-				+1.7
5,814,550	+				-0.7
5,814,550	+				+1.0
5,814,550	+				+1.2
5,814,550	+				+1.1
5,814,550	+				-1.4
5,814,551	-				-0.1
5,814,551	-				+1.2
5,814,551	-				+0.4
5,814,614	+				-1.1
5,814,614	+				-1.3
5,814,614	+				-0.7
5,814,614	+				+2.5
5,814,614	+				+0.7
5,814,614	+				-0.8
5,814,614	+				+0.1
5,814,615	-				+1.4
5,814,615	-				-1.1
5,814,624	+				+0.0
5,814,624	+				-1.3
5,814,624	+				-1.3
5,814,625	-				-1.3
5,814,625	-				-2.0
5,814,653	+				-1.8
5,814,653	+				-3.0
5,814,653	+				-1.1
5,814,653	+				-2.1
5,814,654	-				+1.2
5,814,654	-				+0.6
5,814,654	-				+0.7
5,814,654	-				+3.0
5,814,663	+				-1.3
5,814,663	+				+3.7
5,814,663	+				+0.5
5,814,663	+				-2.0
5,814,664	-				-0.8
5,814,664	-				+0.5
5,814,664	-				+0.0
5,814,666	-				-1.9
5,814,681	+				+1.1
5,814,682	-				-0.5
5,814,682	-				-0.7
5,814,682	-				-0.8
5,814,718	-				-0.5
5,814,726	+				-1.6
5,814,726	+				-0.5
5,814,727	-				+0.3
5,814,735	+				-0.9
5,814,735	+				-0.1
5,814,735	+				+0.7
5,814,735	+				+1.0
5,814,735	+				+1.2
5,814,735	+				+2.6
5,814,735	+				-1.6
5,814,735	+				-1.6
5,814,735	+				-2.3
5,814,735	+				+0.0
5,814,735	+				-1.6
5,814,735	+				+0.6
5,814,735	+				-0.3
5,814,735	+				-0.3
5,814,735	+				+0.7
5,814,736	-				-2.9
5,814,736	-				-2.0
5,814,736	-				+0.6
5,814,736	-				+0.7
5,814,736	-				-0.3
5,814,736	-				+1.7
5,814,736	-				-0.8
5,814,736	-				-1.3
5,814,736	-				+1.0
5,814,792	+				-2.7
5,814,792	+				-0.5
5,814,793	-				-0.7
5,814,793	-				+3.4
5,814,793	-				-1.4
5,814,858	+				-2.0
5,814,858	+				+2.0
5,814,858	+				+0.1
5,814,858	+				-0.3
5,814,858	+				-1.3
5,814,858	+				+2.0
5,814,859	-				-1.6
5,814,859	-				+1.6
5,814,888	+				-2.3
5,814,888	+				+0.6
5,814,888	+				+1.6
5,814,889	-				-2.9
5,814,889	-				-0.3
5,814,889	-				-3.2
5,814,889	-				+1.8
5,814,890	+				+4.0
5,814,890	+				+1.0
5,814,890	+				+1.9
5,814,890	+				-0.7
5,814,890	+				+3.7
5,814,890	+				+0.9
5,814,890	+				-1.0
5,814,890	+				-1.6
5,814,890	+				-0.1
5,814,891	-				+0.7
5,814,891	-				+1.3
5,814,891	-				-1.8
5,814,891	-				-0.3
5,814,891	-				+2.0
5,814,910	+				+0.3
5,814,911	-				-0.7
5,814,911	-				+1.8
5,814,930	+				+0.3
5,814,930	+				-1.4
5,814,930	+				+0.8
5,814,961	-				+0.0
5,814,976	+				-0.2
5,814,976	+				-0.7
5,814,976	+				-1.1
5,814,976	+				-0.1
5,814,978	+				-0.3
5,814,979	-				+1.1
5,814,979	-				-0.4
5,814,979	-				-1.1
5,814,979	-				-0.6
5,814,984	+				+0.0
5,814,985	-				+1.1
5,814,989	+				+0.7
5,814,990	-				-2.2
5,814,991	+				+1.3
5,814,992	-				-0.1
5,814,992	-				+2.2
5,814,992	-				-0.9
5,815,061	+				-0.4
5,815,062	-				-2.3
5,815,062	-				+0.7
5,815,076	+				-0.7
5,815,079	+				-1.1
5,815,080	-				+3.7
5,815,080	-				-0.5
5,815,080	-				-1.4
5,815,080	-				+1.6
5,815,084	-				+0.7
5,815,084	-				+1.8
5,815,084	-				-3.5
5,815,084	-				+0.4
5,815,093	-				+0.1
5,815,177	+				+1.3
5,815,216	+		PFLU_RS26040	0.14	+1.8
5,815,216	+		PFLU_RS26040	0.14	+1.0
5,815,216	+		PFLU_RS26040	0.14	-2.7
5,815,217	-		PFLU_RS26040	0.14	+2.0
5,815,217	-		PFLU_RS26040	0.14	-1.8
5,815,285	+		PFLU_RS26040	0.21	-0.7
5,815,286	-		PFLU_RS26040	0.21	+1.2
5,815,286	-		PFLU_RS26040	0.21	-1.0
5,815,286	-		PFLU_RS26040	0.21	-1.7
5,815,286	-		PFLU_RS26040	0.21	-1.3
5,815,318	+		PFLU_RS26040	0.24	-0.7
5,815,318	+		PFLU_RS26040	0.24	+1.9
5,815,318	+		PFLU_RS26040	0.24	-1.5
5,815,318	+		PFLU_RS26040	0.24	+2.8
5,815,318	+		PFLU_RS26040	0.24	+0.4
5,815,318	+		PFLU_RS26040	0.24	-2.5
5,815,318	+		PFLU_RS26040	0.24	+2.9
5,815,318	+		PFLU_RS26040	0.24	-2.0
5,815,318	+		PFLU_RS26040	0.24	+2.1
5,815,318	+		PFLU_RS26040	0.24	+4.6
5,815,318	+		PFLU_RS26040	0.24	+1.5
5,815,318	+		PFLU_RS26040	0.24	-0.5
5,815,318	+		PFLU_RS26040	0.24	-2.8
5,815,318	+		PFLU_RS26040	0.24	+1.9
5,815,318	+		PFLU_RS26040	0.24	+1.1
5,815,318	+		PFLU_RS26040	0.24	+1.1
5,815,318	+		PFLU_RS26040	0.24	-1.7
5,815,318	+		PFLU_RS26040	0.24	-1.8
5,815,318	+		PFLU_RS26040	0.24	+0.3
5,815,318	+		PFLU_RS26040	0.24	+2.4
5,815,319	-		PFLU_RS26040	0.24	-2.1
5,815,319	-		PFLU_RS26040	0.24	-2.7
5,815,319	-		PFLU_RS26040	0.24	-0.5
5,815,319	-		PFLU_RS26040	0.24	+1.1
5,815,319	-		PFLU_RS26040	0.24	+1.3
5,815,319	-		PFLU_RS26040	0.24	-1.5
5,815,319	-		PFLU_RS26040	0.24	-0.3
5,815,319	-		PFLU_RS26040	0.24	+1.2
5,815,319	-		PFLU_RS26040	0.24	-0.7
5,815,319	-		PFLU_RS26040	0.24	-0.9
5,815,319	-		PFLU_RS26040	0.24	-0.3
5,815,319	-		PFLU_RS26040	0.24	-0.7
5,815,319	-		PFLU_RS26040	0.24	+1.2
5,815,319	-		PFLU_RS26040	0.24	-2.1
5,815,319	-		PFLU_RS26040	0.24	+1.4
5,815,319	-		PFLU_RS26040	0.24	+1.0
5,815,319	-		PFLU_RS26040	0.24	-0.6
5,815,319	-		PFLU_RS26040	0.24	-2.2
5,815,319	-		PFLU_RS26040	0.24	+1.7
5,815,319	-		PFLU_RS26040	0.24	-1.6
5,815,319	-		PFLU_RS26040	0.24	+2.6
5,815,319	-		PFLU_RS26040	0.24	-1.7
5,815,319	-		PFLU_RS26040	0.24	-1.0
5,815,319	-		PFLU_RS26040	0.24	-0.7
5,815,319	-		PFLU_RS26040	0.24	-2.7
5,815,321	+		PFLU_RS26040	0.24	+4.3
5,815,321	+		PFLU_RS26040	0.24	+0.9
5,815,321	+		PFLU_RS26040	0.24	-1.6
5,815,321	+		PFLU_RS26040	0.24	+0.3
5,815,321	+		PFLU_RS26040	0.24	-1.2
5,815,321	+		PFLU_RS26040	0.24	-1.1
5,815,321	+		PFLU_RS26040	0.24	+1.3
5,815,322	-		PFLU_RS26040	0.24	-1.1
5,815,322	-		PFLU_RS26040	0.24	-0.8
5,815,322	-		PFLU_RS26040	0.24	-1.5
5,815,322	-		PFLU_RS26040	0.24	-0.3
5,815,322	-		PFLU_RS26040	0.24	-0.8
5,815,322	-		PFLU_RS26040	0.24	+1.0
5,815,339	+		PFLU_RS26040	0.26	+0.3
5,815,339	+		PFLU_RS26040	0.26	+1.3
5,815,339	+		PFLU_RS26040	0.26	-1.0
5,815,339	+		PFLU_RS26040	0.26	+3.9
5,815,339	+		PFLU_RS26040	0.26	-0.8
5,815,340	-		PFLU_RS26040	0.26	+4.1
5,815,340	-		PFLU_RS26040	0.26	+1.7
5,815,373	+		PFLU_RS26040	0.29	+0.3
5,815,373	+		PFLU_RS26040	0.29	+0.7
5,815,374	-		PFLU_RS26040	0.29	+3.0
5,815,374	-		PFLU_RS26040	0.29	+0.6
5,815,477	+		PFLU_RS26040	0.39	+0.2
5,815,477	+		PFLU_RS26040	0.39	+0.7
5,815,478	-		PFLU_RS26040	0.39	-1.0
5,815,478	-		PFLU_RS26040	0.39	-0.8
5,815,503	+		PFLU_RS26040	0.42	-0.6
5,815,504	-		PFLU_RS26040	0.42	-2.7
5,815,504	-		PFLU_RS26040	0.42	+2.1
5,815,521	+		PFLU_RS26040	0.44	+2.2
5,815,521	+		PFLU_RS26040	0.44	-1.7
5,815,521	+		PFLU_RS26040	0.44	-0.8
5,815,522	-		PFLU_RS26040	0.44	+1.3
5,815,522	-		PFLU_RS26040	0.44	-0.5
5,815,522	-		PFLU_RS26040	0.44	-1.8
5,815,522	-		PFLU_RS26040	0.44	-0.8
5,815,522	-		PFLU_RS26040	0.44	+2.7
5,815,522	-		PFLU_RS26040	0.44	-2.1
5,815,522	-		PFLU_RS26040	0.44	-0.3
5,815,522	-		PFLU_RS26040	0.44	-1.4
5,815,522	-		PFLU_RS26040	0.44	+1.5
5,815,522	-		PFLU_RS26040	0.44	+1.0
5,815,524	+		PFLU_RS26040	0.44	-1.8
5,815,525	-		PFLU_RS26040	0.44	+2.3
5,815,532	+		PFLU_RS26040	0.45	+1.5
5,815,573	-		PFLU_RS26040	0.49	+0.1
5,815,606	+		PFLU_RS26040	0.52	+1.6
5,815,637	-		PFLU_RS26040	0.55	-1.4
5,815,637	-		PFLU_RS26040	0.55	+3.5
5,815,637	-		PFLU_RS26040	0.55	+0.4
5,815,637	-		PFLU_RS26040	0.55	+0.0
5,815,672	+		PFLU_RS26040	0.58	+0.0
5,815,672	+		PFLU_RS26040	0.58	+1.5
5,815,672	+		PFLU_RS26040	0.58	+1.3
5,815,672	+		PFLU_RS26040	0.58	+0.0
5,815,673	-		PFLU_RS26040	0.58	+1.4
5,815,673	-		PFLU_RS26040	0.58	+0.0
5,815,684	+		PFLU_RS26040	0.60	+0.8
5,815,684	+		PFLU_RS26040	0.60	-0.7
5,815,684	+		PFLU_RS26040	0.60	+0.3
5,815,684	+		PFLU_RS26040	0.60	+1.3
5,815,684	+		PFLU_RS26040	0.60	-1.7
5,815,696	+		PFLU_RS26040	0.61	+1.9
5,815,697	-		PFLU_RS26040	0.61	-0.3
5,815,697	-		PFLU_RS26040	0.61	+0.1
5,815,697	-		PFLU_RS26040	0.61	-0.3
5,815,702	+		PFLU_RS26040	0.61	+0.7
5,815,702	+		PFLU_RS26040	0.61	-1.3
5,815,702	+		PFLU_RS26040	0.61	+2.3
5,815,702	+		PFLU_RS26040	0.61	-2.4
5,815,703	-		PFLU_RS26040	0.61	+1.5
5,815,703	-		PFLU_RS26040	0.61	-0.8
5,815,745	+		PFLU_RS26040	0.65	+0.0
5,815,745	+		PFLU_RS26040	0.65	-1.5
5,815,745	+		PFLU_RS26040	0.65	-2.4
5,815,745	+		PFLU_RS26040	0.65	+0.1
5,815,746	-		PFLU_RS26040	0.66	-0.8
5,815,766	+		PFLU_RS26040	0.68	-0.3
5,815,766	+		PFLU_RS26040	0.68	-3.3
5,815,767	-		PFLU_RS26040	0.68	-2.4
5,815,824	+		PFLU_RS26040	0.73	-1.7
5,815,824	+		PFLU_RS26040	0.73	+1.8
5,815,825	-		PFLU_RS26040	0.73	+1.6
5,815,825	-		PFLU_RS26040	0.73	-0.3
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5,817,031	-		PFLU_RS26045	0.44	+0.0
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5,817,092	-		PFLU_RS26045	0.47	-1.5