Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17795

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
4,040,443	+		PFLU_RS17785	0.45	+0.0
4,040,464	-		PFLU_RS17785	0.50	+1.1
4,040,500	-		PFLU_RS17785	0.60	-1.6
4,040,500	-		PFLU_RS17785	0.60	+0.7
4,040,500	-		PFLU_RS17785	0.60	+0.2
4,040,500	-		PFLU_RS17785	0.60	-1.3
4,040,500	-		PFLU_RS17785	0.60	+2.1
4,040,500	-		PFLU_RS17785	0.60	-1.0
4,040,500	-		PFLU_RS17785	0.60	+3.0
4,040,500	-		PFLU_RS17785	0.60	-0.2
4,040,500	-		PFLU_RS17785	0.60	+1.2
4,040,501	+		PFLU_RS17785	0.60	+1.0
4,040,501	+		PFLU_RS17785	0.60	+0.5
4,040,501	+		PFLU_RS17785	0.60	+3.3
4,040,518	+		PFLU_RS17785	0.65	-1.8
4,040,518	+		PFLU_RS17785	0.65	+4.4
4,040,518	+		PFLU_RS17785	0.65	+1.3
4,040,518	+		PFLU_RS17785	0.65	+0.8
4,040,518	+		PFLU_RS17785	0.65	-1.9
4,040,518	+		PFLU_RS17785	0.65	-0.5
4,040,518	+		PFLU_RS17785	0.65	-1.2
4,040,518	+		PFLU_RS17785	0.65	+1.6
4,040,518	+		PFLU_RS17785	0.65	+0.8
4,040,519	-		PFLU_RS17785	0.65	-0.5
4,040,519	-		PFLU_RS17785	0.65	+1.2
4,040,519	-		PFLU_RS17785	0.65	+0.4
4,040,519	-		PFLU_RS17785	0.65	+0.8
4,040,613	+		PFLU_RS17785	0.90	+1.2
4,040,614	-		PFLU_RS17785	0.90	-0.5
4,040,614	-		PFLU_RS17785	0.90	+0.2
4,040,617	+				+0.2
4,040,617	+				-1.2
4,040,691	+				-1.0
4,040,691	+				-1.4
4,040,691	+				-0.2
4,040,692	-				-1.2
4,040,692	-				-1.5
4,040,700	-				+2.8
4,040,702	+				-1.9
4,040,702	+				+1.1
4,040,703	-		PFLU_RS17790	0.10	-1.4
4,040,711	+		PFLU_RS17790	0.12	-1.0
4,040,711	+		PFLU_RS17790	0.12	-0.6
4,040,712	-		PFLU_RS17790	0.12	+0.2
4,040,712	-		PFLU_RS17790	0.12	+2.9
4,040,713	+		PFLU_RS17790	0.12	-0.8
4,040,713	+		PFLU_RS17790	0.12	-0.5
4,040,713	+		PFLU_RS17790	0.12	-1.2
4,040,713	+		PFLU_RS17790	0.12	-1.6
4,040,714	-		PFLU_RS17790	0.13	+1.7
4,040,714	-		PFLU_RS17790	0.13	-1.5
4,040,714	-		PFLU_RS17790	0.13	+1.8
4,040,714	-		PFLU_RS17790	0.13	-0.3
4,040,731	+		PFLU_RS17790	0.17	-1.4
4,040,764	+		PFLU_RS17790	0.25	-1.2
4,040,773	-		PFLU_RS17790	0.27	-1.4
4,040,834	+		PFLU_RS17790	0.41	+2.1
4,040,834	+		PFLU_RS17790	0.41	-1.6
4,040,834	+		PFLU_RS17790	0.41	-0.2
4,040,834	+		PFLU_RS17790	0.41	+2.1
4,040,834	+		PFLU_RS17790	0.41	-0.5
4,040,835	-		PFLU_RS17790	0.42	+2.2
4,040,835	-		PFLU_RS17790	0.42	+0.5
4,040,838	+		PFLU_RS17790	0.42	-1.8
4,040,839	-		PFLU_RS17790	0.43	+0.4
4,040,847	+		PFLU_RS17790	0.44	+3.6
4,040,847	+		PFLU_RS17790	0.44	-2.5
4,040,848	-		PFLU_RS17790	0.45	-0.5
4,040,862	-		PFLU_RS17790	0.48	-0.4
4,040,863	+		PFLU_RS17790	0.48	-0.5
4,040,943	+		PFLU_RS17790	0.67	-2.8
4,040,943	+		PFLU_RS17790	0.67	+1.8
4,040,943	+		PFLU_RS17790	0.67	+1.9
4,040,943	+		PFLU_RS17790	0.67	-1.2
4,040,943	+		PFLU_RS17790	0.67	-1.5
4,040,943	+		PFLU_RS17790	0.67	+0.8
4,040,944	-		PFLU_RS17790	0.68	-1.5
4,040,944	-		PFLU_RS17790	0.68	-1.5
4,040,944	-		PFLU_RS17790	0.68	-0.5
4,040,944	-		PFLU_RS17790	0.68	+1.8
4,040,947	+		PFLU_RS17790	0.68	+2.9
4,040,947	+		PFLU_RS17790	0.68	+0.5
4,040,947	+		PFLU_RS17790	0.68	-0.8
4,040,947	+		PFLU_RS17790	0.68	-1.0
4,040,947	+		PFLU_RS17790	0.68	-0.8
4,040,947	+		PFLU_RS17790	0.68	+0.2
4,040,947	+		PFLU_RS17790	0.68	+0.2
4,040,947	+		PFLU_RS17790	0.68	+0.5
4,040,947	+		PFLU_RS17790	0.68	-2.8
4,040,948	-		PFLU_RS17790	0.69	-0.8
4,040,948	-		PFLU_RS17790	0.69	-1.5
4,040,948	-		PFLU_RS17790	0.69	+0.8
4,040,948	-		PFLU_RS17790	0.69	+0.8
4,040,974	+		PFLU_RS17790	0.75	-1.4
4,041,007	+		PFLU_RS17790	0.83	-0.8
4,041,007	+		PFLU_RS17790	0.83	-0.5
4,041,007	+		PFLU_RS17790	0.83	-0.5
4,041,007	+		PFLU_RS17790	0.83	-1.3
4,041,007	+		PFLU_RS17790	0.83	-0.8
4,041,007	+		PFLU_RS17790	0.83	-2.0
4,041,007	+		PFLU_RS17790	0.83	-1.4
4,041,007	+		PFLU_RS17790	0.83	+0.8
4,041,007	+		PFLU_RS17790	0.83	+1.1
4,041,007	+		PFLU_RS17790	0.83	-1.2
4,041,007	+		PFLU_RS17790	0.83	+2.1
4,041,007	+		PFLU_RS17790	0.83	+0.5
4,041,007	+		PFLU_RS17790	0.83	-1.0
4,041,007	+		PFLU_RS17790	0.83	-2.5
4,041,007	+		PFLU_RS17790	0.83	+3.2
4,041,007	+		PFLU_RS17790	0.83	-1.0
4,041,007	+		PFLU_RS17790	0.83	-1.2
4,041,007	+		PFLU_RS17790	0.83	+0.8
4,041,007	+		PFLU_RS17790	0.83	-1.4
4,041,008	-		PFLU_RS17790	0.83	+2.1
4,041,008	-		PFLU_RS17790	0.83	-2.1
4,041,008	-		PFLU_RS17790	0.83	+0.8
4,041,008	-		PFLU_RS17790	0.83	-0.2
4,041,008	-		PFLU_RS17790	0.83	-2.1
4,041,008	-		PFLU_RS17790	0.83	+1.8
4,041,008	-		PFLU_RS17790	0.83	+1.2
4,041,008	-		PFLU_RS17790	0.83	+3.1
4,041,008	-		PFLU_RS17790	0.83	+2.1
4,041,008	-		PFLU_RS17790	0.83	-2.3
4,041,008	-		PFLU_RS17790	0.83	-2.4
4,041,008	-		PFLU_RS17790	0.83	-0.5
4,041,008	-		PFLU_RS17790	0.83	+3.7
4,041,008	-		PFLU_RS17790	0.83	-1.0
4,041,008	-		PFLU_RS17790	0.83	+0.4
4,041,170	+				+0.5
4,041,181	-				-1.4
4,041,284	+				+2.0
4,041,285	-				-1.2
4,041,377	-				-0.6
4,041,377	-				+3.5
4,041,384	+				-1.5
4,041,385	-				-0.5
4,041,385	-				+2.5
4,041,417	+				-1.7
4,041,417	+				+0.7
4,041,418	-				+3.1
4,041,418	-				-2.4
4,041,431	-				+2.7
4,041,436	+				-0.9
4,041,436	+				-1.5
4,041,437	-				+2.9
4,041,437	-				+1.1
4,041,437	-				-1.0
4,041,437	-				+1.9
4,041,480	-		PFLU_RS17795	0.11	-1.1
4,041,552	+		PFLU_RS17795	0.17	-2.3
4,041,553	-		PFLU_RS17795	0.17	-1.4
4,041,659	-		PFLU_RS17795	0.26	-1.6
4,041,659	-		PFLU_RS17795	0.26	-2.0
4,041,722	+		PFLU_RS17795	0.31	-1.0
4,041,723	-		PFLU_RS17795	0.31	+0.1
4,041,723	-		PFLU_RS17795	0.31	+1.4
4,041,723	-		PFLU_RS17795	0.31	+1.3
4,041,723	-		PFLU_RS17795	0.31	-0.8
4,041,723	-		PFLU_RS17795	0.31	+2.1
4,041,787	+		PFLU_RS17795	0.36	-0.5
4,041,788	-		PFLU_RS17795	0.36	+2.4
4,041,788	-		PFLU_RS17795	0.36	-0.9
4,042,079	-		PFLU_RS17795	0.60	-1.2
4,042,079	-		PFLU_RS17795	0.60	+2.4
4,042,089	+		PFLU_RS17795	0.61	-2.5
4,042,090	-		PFLU_RS17795	0.61	-1.4
4,042,128	+		PFLU_RS17795	0.64	-0.2
4,042,128	+		PFLU_RS17795	0.64	+1.5
4,042,128	+		PFLU_RS17795	0.64	-3.4
4,042,128	+		PFLU_RS17795	0.64	-2.6
4,042,129	-		PFLU_RS17795	0.64	-0.2
4,042,176	+		PFLU_RS17795	0.68	+0.1
4,042,337	-		PFLU_RS17795	0.81	+1.8
4,042,402	-		PFLU_RS17795	0.86	-0.4
4,042,461	+				-0.1
4,042,461	+				+0.8
4,042,461	+				-1.4
4,042,461	+				-1.1
4,042,461	+				-2.6
4,042,462	-				+2.3
4,042,462	-				+1.5
4,042,462	-				+1.5
4,042,462	-				+0.2
4,042,462	-				-0.2
4,042,462	-				+0.7
4,042,462	-				-1.9
4,042,462	-				-0.8
4,042,506	+				-0.5
4,042,507	-				+3.2
4,042,507	-				+2.8
4,042,507	-				-0.8
4,042,623	+				-2.4
4,042,623	+				-0.1
4,042,624	-				-0.8
4,042,624	-				-2.2
4,042,624	-				+3.7
4,042,689	+				+3.1
4,042,689	+				-0.9
4,042,689	+				+1.1
4,042,689	+				+2.6
4,042,689	+				-0.8
4,042,689	+				+1.2
4,042,689	+				+1.6
4,042,690	-				+0.0
4,042,690	-				+1.1
4,042,690	-				-0.5
4,042,690	-				+1.3
4,042,690	-				+0.7
4,042,798	-		PFLU_RS17800	0.17	-0.5
4,042,942	+		PFLU_RS17800	0.30	+0.1
4,042,983	+		PFLU_RS17800	0.34	+1.2
4,042,983	+		PFLU_RS17800	0.34	-0.5
4,042,983	+		PFLU_RS17800	0.34	+0.2
4,042,983	+		PFLU_RS17800	0.34	-0.8
4,042,984	-		PFLU_RS17800	0.34	+0.1
4,042,984	-		PFLU_RS17800	0.34	-2.7
4,042,984	-		PFLU_RS17800	0.34	-1.0
4,042,984	-		PFLU_RS17800	0.34	+2.5
4,042,984	-		PFLU_RS17800	0.34	-0.2
4,042,984	-		PFLU_RS17800	0.34	+1.8
4,043,141	+		PFLU_RS17800	0.49	+0.2
4,043,141	+		PFLU_RS17800	0.49	+2.6
4,043,142	-		PFLU_RS17800	0.49	+0.8
4,043,142	-		PFLU_RS17800	0.49	+3.2
4,043,142	-		PFLU_RS17800	0.49	-0.5
4,043,142	-		PFLU_RS17800	0.49	+0.8
4,043,142	-		PFLU_RS17800	0.49	-0.8
4,043,208	+		PFLU_RS17800	0.55	-3.0
4,043,235	+		PFLU_RS17800	0.58	+0.2
4,043,235	+		PFLU_RS17800	0.58	-1.5
4,043,236	-		PFLU_RS17800	0.58	-2.3
4,043,264	-		PFLU_RS17800	0.61	+2.0