Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS15720

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
3,563,351	-		PFLU_RS15715	0.80	-1.3
3,563,464	+		PFLU_RS15715	0.83	+3.2
3,563,464	+		PFLU_RS15715	0.83	+0.8
3,563,464	+		PFLU_RS15715	0.83	+0.0
3,563,464	+		PFLU_RS15715	0.83	-1.7
3,563,464	+		PFLU_RS15715	0.83	-0.7
3,563,464	+		PFLU_RS15715	0.83	-1.4
3,563,464	+		PFLU_RS15715	0.83	-1.4
3,563,464	+		PFLU_RS15715	0.83	+1.4
3,563,464	+		PFLU_RS15715	0.83	+0.0
3,563,464	+		PFLU_RS15715	0.83	+0.2
3,563,464	+		PFLU_RS15715	0.83	+0.6
3,563,464	+		PFLU_RS15715	0.83	+0.0
3,563,464	+		PFLU_RS15715	0.83	-1.0
3,563,465	-		PFLU_RS15715	0.83	+3.0
3,563,465	-		PFLU_RS15715	0.83	+0.4
3,563,465	-		PFLU_RS15715	0.83	-2.2
3,563,465	-		PFLU_RS15715	0.83	+1.0
3,563,465	-		PFLU_RS15715	0.83	+1.6
3,563,465	-		PFLU_RS15715	0.83	-1.4
3,563,465	-		PFLU_RS15715	0.83	+0.0
3,563,465	-		PFLU_RS15715	0.83	+0.2
3,563,465	-		PFLU_RS15715	0.83	+3.1
3,563,465	-		PFLU_RS15715	0.83	-1.8
3,563,465	-		PFLU_RS15715	0.83	-1.4
3,563,465	-		PFLU_RS15715	0.83	+1.8
3,563,465	-		PFLU_RS15715	0.83	-1.8
3,563,745	+				+3.1
3,563,746	-				+0.6
3,563,901	+				-1.4
3,563,901	+				-0.7
3,563,902	-				+0.7
3,563,916	+				+3.0
3,563,916	+				-1.7
3,563,916	+				-1.0
3,563,916	+				-2.0
3,563,917	-				-0.4
3,563,917	-				-2.0
3,563,917	-				-1.8
3,563,917	-				+2.8
3,564,260	-				-2.0
3,564,260	-				+2.5
3,564,260	-				+0.0
3,564,260	-				-1.2
3,564,260	-				+1.5
3,564,300	+		PFLU_RS15720	0.12	-2.0
3,564,389	-		PFLU_RS15720	0.18	+1.0
3,564,763	+		PFLU_RS15720	0.40	-0.4
3,564,763	+		PFLU_RS15720	0.40	-0.7
3,564,763	+		PFLU_RS15720	0.40	+0.6
3,564,764	-		PFLU_RS15720	0.41	-2.2
3,564,796	+		PFLU_RS15720	0.42	+1.2
3,564,796	+		PFLU_RS15720	0.42	-1.7
3,564,796	+		PFLU_RS15720	0.42	-1.2
3,564,796	+		PFLU_RS15720	0.42	-0.7
3,564,796	+		PFLU_RS15720	0.42	-2.2
3,564,797	-		PFLU_RS15720	0.43	+0.7
3,564,797	-		PFLU_RS15720	0.43	-1.7
3,564,797	-		PFLU_RS15720	0.43	-1.5
3,564,797	-		PFLU_RS15720	0.43	-1.5
3,564,797	-		PFLU_RS15720	0.43	-1.0
3,564,833	-		PFLU_RS15720	0.45	+0.3
3,564,833	-		PFLU_RS15720	0.45	-2.1
3,564,904	+		PFLU_RS15720	0.49	-2.5
3,564,904	+		PFLU_RS15720	0.49	+1.0
3,564,904	+		PFLU_RS15720	0.49	-1.0
3,564,904	+		PFLU_RS15720	0.49	+1.6
3,564,904	+		PFLU_RS15720	0.49	-1.8
3,564,904	+		PFLU_RS15720	0.49	+0.0
3,564,905	-		PFLU_RS15720	0.49	-0.5
3,564,905	-		PFLU_RS15720	0.49	-1.4
3,564,905	-		PFLU_RS15720	0.49	-0.2
3,564,906	+		PFLU_RS15720	0.49	-0.4
3,564,907	-		PFLU_RS15720	0.49	+1.6
3,564,922	+		PFLU_RS15720	0.50	-1.5
3,564,922	+		PFLU_RS15720	0.50	-1.4
3,564,923	-		PFLU_RS15720	0.50	-1.0
3,564,923	-		PFLU_RS15720	0.50	-0.8
3,564,923	-		PFLU_RS15720	0.50	-2.1
3,565,077	-		PFLU_RS15720	0.60	+0.3
3,565,077	-		PFLU_RS15720	0.60	+1.3
3,565,099	+		PFLU_RS15720	0.61	+3.2
3,565,099	+		PFLU_RS15720	0.61	+4.2
3,565,099	+		PFLU_RS15720	0.61	+1.0
3,565,099	+		PFLU_RS15720	0.61	+1.4
3,565,099	+		PFLU_RS15720	0.61	-2.1
3,565,099	+		PFLU_RS15720	0.61	-1.2
3,565,099	+		PFLU_RS15720	0.61	+2.8
3,565,099	+		PFLU_RS15720	0.61	-1.8
3,565,099	+		PFLU_RS15720	0.61	+0.0
3,565,099	+		PFLU_RS15720	0.61	-1.0
3,565,100	-		PFLU_RS15720	0.61	-1.2
3,565,100	-		PFLU_RS15720	0.61	+0.6
3,565,100	-		PFLU_RS15720	0.61	-1.5
3,565,100	-		PFLU_RS15720	0.61	-1.5
3,565,100	-		PFLU_RS15720	0.61	+1.3
3,565,100	-		PFLU_RS15720	0.61	+0.0
3,565,100	-		PFLU_RS15720	0.61	+1.4
3,565,103	-		PFLU_RS15720	0.61	+0.6
3,565,479	+		PFLU_RS15720	0.84	-1.7
3,565,480	-		PFLU_RS15720	0.84	-2.2
3,565,480	-		PFLU_RS15720	0.84	-2.3
3,565,480	-		PFLU_RS15720	0.84	+1.9
3,565,504	+		PFLU_RS15720	0.86	+1.4
3,565,525	+		PFLU_RS15720	0.87	-2.3
3,565,525	+		PFLU_RS15720	0.87	+2.0
3,565,579	+				+3.6
3,565,580	-				-1.0
3,565,648	+				-0.7
3,565,649	-				-2.5
3,565,649	-				+2.1
3,565,747	+				-0.4
3,565,803	+		PFLU_RS15725	0.12	-1.2
3,565,804	-		PFLU_RS15725	0.12	+2.2
3,565,804	-		PFLU_RS15725	0.12	+0.5
3,565,804	-		PFLU_RS15725	0.12	-2.4
3,565,841	-		PFLU_RS15725	0.18	+2.8
3,566,134	+		PFLU_RS15725	0.62	-2.1
3,566,135	-		PFLU_RS15725	0.62	-1.4
3,566,135	-		PFLU_RS15725	0.62	+1.0
3,566,135	-		PFLU_RS15725	0.62	-0.4
3,566,135	-		PFLU_RS15725	0.62	-1.4
3,566,135	-		PFLU_RS15725	0.62	+2.0
3,566,299	+		PFLU_RS15725	0.87	-2.1
3,566,299	+		PFLU_RS15725	0.87	-1.8
3,566,299	+		PFLU_RS15725	0.87	+3.6
3,566,299	+		PFLU_RS15725	0.87	-0.3
3,566,299	+		PFLU_RS15725	0.87	+1.6
3,566,299	+		PFLU_RS15725	0.87	-0.4
3,566,299	+		PFLU_RS15725	0.87	-1.7
3,566,299	+		PFLU_RS15725	0.87	-0.3
3,566,299	+		PFLU_RS15725	0.87	+1.3
3,566,300	-		PFLU_RS15725	0.88	-2.0
3,566,300	-		PFLU_RS15725	0.88	+0.7
3,566,300	-		PFLU_RS15725	0.88	-0.4
3,566,300	-		PFLU_RS15725	0.88	+2.7
3,566,300	-		PFLU_RS15725	0.88	+1.2
3,566,300	-		PFLU_RS15725	0.88	+0.6
3,566,300	-		PFLU_RS15725	0.88	+1.4
3,566,300	-		PFLU_RS15725	0.88	-0.1
3,566,300	-		PFLU_RS15725	0.88	-0.1
3,566,454	+				-1.5
3,566,455	-				+1.5
3,566,536	+				+1.8
3,566,537	-				-2.3
3,566,613	+				+1.2
3,566,613	+				+0.1
3,566,613	+				-2.1
3,566,613	+				-1.0
3,566,613	+				-1.8
3,566,613	+				+0.0
3,566,613	+				-0.4
3,566,613	+				+1.3
3,566,613	+				+1.9
3,566,613	+				-1.5
3,566,613	+				-0.4
3,566,614	-				-1.2
3,566,614	-				-1.4
3,566,614	-				+0.7
3,566,614	-				-2.5
3,566,614	-				+3.5
3,566,614	-				+1.1
3,566,614	-				-0.7
3,566,614	-				+1.4
3,566,614	-				-0.7
3,566,614	-				+2.7
3,566,614	-				-1.5
3,566,614	-				+1.5
3,566,681	+				-0.4
3,566,682	-				+1.6
3,566,682	-				-1.4
3,566,682	-				-1.8
3,566,682	-				-0.4
3,566,682	-				+0.4
3,566,682	-				+0.0
3,566,730	+				+2.8