Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS30715

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
2,692,903	-		PFLU_RS12130	0.57	+2.1
2,692,903	-		PFLU_RS12130	0.57	-0.8
2,692,924	+		PFLU_RS12130	0.62	-1.3
2,692,924	+		PFLU_RS12130	0.62	+1.1
2,692,924	+		PFLU_RS12130	0.62	+1.2
2,692,924	+		PFLU_RS12130	0.62	+1.7
2,692,924	+		PFLU_RS12130	0.62	+0.1
2,692,924	+		PFLU_RS12130	0.62	-1.1
2,692,924	+		PFLU_RS12130	0.62	+0.6
2,692,924	+		PFLU_RS12130	0.62	+0.7
2,692,925	-		PFLU_RS12130	0.62	+0.9
2,692,925	-		PFLU_RS12130	0.62	-2.3
2,692,925	-		PFLU_RS12130	0.62	-0.1
2,692,925	-		PFLU_RS12130	0.62	-0.9
2,692,925	-		PFLU_RS12130	0.62	-0.4
2,692,936	-		PFLU_RS12130	0.64	-0.7
2,692,945	-		PFLU_RS12130	0.66	-0.9
2,692,945	-		PFLU_RS12130	0.66	-1.6
2,692,945	-		PFLU_RS12130	0.66	+2.5
2,692,957	-		PFLU_RS12130	0.69	+1.1
2,693,005	+		PFLU_RS12130	0.80	+2.4
2,693,042	+		PFLU_RS12130	0.88	-0.9
2,693,042	+		PFLU_RS12130	0.88	+0.6
2,693,042	+		PFLU_RS12130	0.88	-0.7
2,693,043	-		PFLU_RS12130	0.88	+2.8
2,693,043	-		PFLU_RS12130	0.88	+0.6
2,693,043	-		PFLU_RS12130	0.88	-1.8
2,693,046	-		PFLU_RS12130	0.89	-0.1
2,693,046	-		PFLU_RS12130	0.89	-0.6
2,693,046	-		PFLU_RS12130	0.89	-0.4
2,693,167	+				+2.3
2,693,198	+				+0.9
2,693,198	+				-2.1
2,693,198	+				+2.7
2,693,198	+				+0.3
2,693,198	+				-0.5
2,693,198	+				-0.1
2,693,198	+				+1.1
2,693,198	+				+0.9
2,693,198	+				+1.1
2,693,199	-				-0.7
2,693,199	-				+0.6
2,693,199	-				-0.1
2,693,199	-				-0.9
2,693,199	-				+2.2
2,693,199	-				+2.4
2,693,199	-				-1.9
2,693,199	-				+0.3
2,693,199	-				+1.9
2,693,199	-				+0.7
2,693,205	-				+0.3
2,693,250	-		PFLU_RS12135	0.17	+0.3
2,693,293	+		PFLU_RS12135	0.28	-0.6
2,693,453	+		PFLU_RS12135	0.70	+1.0
2,693,454	-		PFLU_RS12135	0.70	-1.1
2,693,465	-		PFLU_RS12135	0.73	+1.2
2,693,471	+		PFLU_RS12135	0.74	+3.6
2,693,471	+		PFLU_RS12135	0.74	+0.6
2,693,471	+		PFLU_RS12135	0.74	-2.5
2,693,471	+		PFLU_RS12135	0.74	-1.1
2,693,472	-		PFLU_RS12135	0.75	-0.7
2,693,472	-		PFLU_RS12135	0.75	-0.7
2,693,472	-		PFLU_RS12135	0.75	-1.0
2,693,472	-		PFLU_RS12135	0.75	-2.2
2,693,475	+		PFLU_RS12135	0.76	-0.9
2,693,475	+		PFLU_RS12135	0.76	+1.1
2,693,475	+		PFLU_RS12135	0.76	-0.4
2,693,475	+		PFLU_RS12135	0.76	-1.1
2,693,475	+		PFLU_RS12135	0.76	-0.7
2,693,475	+		PFLU_RS12135	0.76	-1.8
2,693,476	-		PFLU_RS12135	0.76	-0.1
2,693,476	-		PFLU_RS12135	0.76	+0.3
2,693,476	-		PFLU_RS12135	0.76	+1.9
2,693,476	-		PFLU_RS12135	0.76	-0.4
2,693,476	-		PFLU_RS12135	0.76	+3.6
2,693,603	+				-0.4
2,693,603	+				-1.6
2,693,603	+				+2.6
2,693,603	+				+3.1
2,693,604	-				+1.3
2,693,604	-				-0.1
2,693,604	-				+0.3
2,693,604	-				-1.9
2,693,604	-				+0.9
2,693,609	+				-0.4
2,693,609	+				+0.9
2,693,610	-				+0.5
2,693,610	-				+2.6
2,693,617	+				+0.3
2,693,617	+				+0.6
2,693,617	+				+3.1
2,693,617	+				-1.8
2,693,618	-				+1.2
2,693,618	-				-1.4
2,693,618	-				+0.3
2,693,630	+				-0.7
2,693,630	+				-1.3
2,693,630	+				+0.1
2,693,631	-		PFLU_RS30710	0.10	-0.1
2,693,631	-		PFLU_RS30710	0.10	-2.0
2,693,631	-		PFLU_RS30710	0.10	+1.9
2,693,636	+		PFLU_RS30710	0.13	-0.3
2,693,644	+		PFLU_RS30710	0.16	+3.0
2,693,656	+		PFLU_RS30710	0.22	-0.6
2,693,667	+		PFLU_RS30710	0.28	-1.6
2,693,668	-		PFLU_RS30710	0.28	+2.9
2,693,668	-		PFLU_RS30710	0.28	+3.5
2,693,668	-		PFLU_RS30710	0.28	-0.1
2,693,710	+		PFLU_RS30710	0.48	-2.0
2,693,711	-		PFLU_RS30710	0.49	+1.0
2,693,717	-		PFLU_RS30710	0.52	-0.9
2,693,717	-		PFLU_RS30710	0.52	-1.8
2,693,717	-		PFLU_RS30710	0.52	+2.3
2,693,741	+		PFLU_RS30710	0.63	+1.1
2,693,741	+		PFLU_RS30710	0.63	+1.9
2,693,742	-		PFLU_RS30710	0.64	-0.1
2,693,745	+		PFLU_RS30710	0.65	-1.3
2,693,745	+		PFLU_RS30710	0.65	+0.2
2,693,791	-		PFLU_RS30710	0.87	+0.8
2,693,799	+				-1.6
2,693,799	+				-0.1
2,693,799	+				+3.2
2,693,800	-				-1.1
2,693,862	+				+2.5
2,693,862	+				-1.1
2,693,862	+				-0.6
2,693,862	+				-1.2
2,693,863	-				+1.4
2,693,863	-				+1.4
2,693,863	-				-0.4
2,693,885	+				+3.1
2,693,885	+				+0.9
2,693,885	+				+3.3
2,693,885	+				+2.5
2,693,886	-				+1.5
2,693,886	-				-1.4
2,693,886	-				-0.1
2,693,886	-				+1.1
2,693,886	-				-1.8
2,693,887	+				-0.6
2,693,887	+				+1.1
2,693,887	+				+1.3
2,693,887	+				+0.5
2,693,887	+				-2.3
2,693,887	+				-2.0
2,693,887	+				+1.6
2,693,887	+				+0.1
2,693,887	+				-0.2
2,693,888	-				+3.5
2,693,888	-				+1.5
2,693,888	-				+0.5
2,693,888	-				-1.6
2,693,888	-				+1.9
2,693,888	-				+1.9
2,693,888	-				-2.2
2,693,888	-				-2.1
2,693,888	-				-1.1
2,693,888	-				+1.9
2,693,937	+		PFLU_RS30715	0.17	-0.6
2,693,938	-		PFLU_RS30715	0.17	-1.4
2,693,938	-		PFLU_RS30715	0.17	-2.3
2,693,967	+		PFLU_RS30715	0.25	-1.3
2,693,968	-		PFLU_RS30715	0.26	-0.1
2,693,995	+		PFLU_RS30715	0.33	-1.6
2,693,996	-		PFLU_RS30715	0.34	+0.7
2,694,058	+		PFLU_RS30715	0.51	-0.7
2,694,059	-		PFLU_RS30715	0.52	-2.0
2,694,108	-		PFLU_RS30715	0.66	+5.4
2,694,124	+		PFLU_RS30715	0.70	-1.7
2,694,124	+		PFLU_RS30715	0.70	+2.6
2,694,125	-		PFLU_RS30715	0.70	-1.3
2,694,125	-		PFLU_RS30715	0.70	-0.7
2,694,137	+		PFLU_RS30715	0.74	-2.3
2,694,138	-		PFLU_RS30715	0.74	-3.1
2,694,138	-		PFLU_RS30715	0.74	+1.8
2,694,138	-		PFLU_RS30715	0.74	-0.3
2,694,162	+		PFLU_RS30715	0.81	+2.0
2,694,162	+		PFLU_RS30715	0.81	-2.7
2,694,162	+		PFLU_RS30715	0.81	+0.3
2,694,163	-		PFLU_RS30715	0.81	+1.6
2,694,163	-		PFLU_RS30715	0.81	-1.1
2,694,163	-		PFLU_RS30715	0.81	+0.7
2,694,233	-				-1.5
2,694,270	+				+0.3
2,694,274	-				-1.4
2,694,295	+				-1.0
2,694,295	+				+2.7
2,694,296	-				-1.1
2,694,459	+		PFLU_RS12140	0.24	-1.1
2,694,459	+		PFLU_RS12140	0.24	+0.9
2,694,459	+		PFLU_RS12140	0.24	+0.6
2,694,459	+		PFLU_RS12140	0.24	-0.1
2,694,459	+		PFLU_RS12140	0.24	+1.0
2,694,459	+		PFLU_RS12140	0.24	+0.9
2,694,460	-		PFLU_RS12140	0.24	+0.2
2,694,460	-		PFLU_RS12140	0.24	-1.0
2,694,460	-		PFLU_RS12140	0.24	-0.4
2,694,460	-		PFLU_RS12140	0.24	+0.2
2,694,460	-		PFLU_RS12140	0.24	-1.0
2,694,460	-		PFLU_RS12140	0.24	+1.2
2,694,460	-		PFLU_RS12140	0.24	+1.9
2,694,460	-		PFLU_RS12140	0.24	-1.4
2,694,460	-		PFLU_RS12140	0.24	+2.0
2,694,460	-		PFLU_RS12140	0.24	-0.1
2,694,460	-		PFLU_RS12140	0.24	+1.9
2,694,463	+		PFLU_RS12140	0.25	+0.9
2,694,463	+		PFLU_RS12140	0.25	-1.4
2,694,464	-		PFLU_RS12140	0.25	-2.3
2,694,464	-		PFLU_RS12140	0.25	-2.6
2,694,464	-		PFLU_RS12140	0.25	+1.9
2,694,464	-		PFLU_RS12140	0.25	-0.3
2,694,464	-		PFLU_RS12140	0.25	+2.8
2,694,472	+		PFLU_RS12140	0.28	-2.8
2,694,473	-		PFLU_RS12140	0.28	+1.5
2,694,473	-		PFLU_RS12140	0.28	-0.1
2,694,533	-		PFLU_RS12140	0.45	-0.4
2,694,539	+		PFLU_RS12140	0.47	+0.9
2,694,540	-		PFLU_RS12140	0.47	-2.7
2,694,540	-		PFLU_RS12140	0.47	-0.1
2,694,540	-		PFLU_RS12140	0.47	+4.3
2,694,546	+		PFLU_RS12140	0.49	-0.4
2,694,546	+		PFLU_RS12140	0.49	+3.1
2,694,546	+		PFLU_RS12140	0.49	+0.2
2,694,546	+		PFLU_RS12140	0.49	+0.3
2,694,546	+		PFLU_RS12140	0.49	+0.7
2,694,546	+		PFLU_RS12140	0.49	+0.3
2,694,546	+		PFLU_RS12140	0.49	-0.7
2,694,546	+		PFLU_RS12140	0.49	-1.6
2,694,546	+		PFLU_RS12140	0.49	+0.6
2,694,547	-		PFLU_RS12140	0.49	-1.4
2,694,547	-		PFLU_RS12140	0.49	-1.7
2,694,547	-		PFLU_RS12140	0.49	-0.1
2,694,547	-		PFLU_RS12140	0.49	-0.1
2,694,547	-		PFLU_RS12140	0.49	-0.9
2,694,547	-		PFLU_RS12140	0.49	-1.1
2,694,547	-		PFLU_RS12140	0.49	-1.4
2,694,663	+		PFLU_RS12140	0.83	+0.3
2,694,716	-				+1.9
2,694,741	+				-0.1
2,694,741	+				+1.9
2,694,741	+				-2.3
2,694,742	-				+1.3
2,694,765	+				-0.9
2,694,765	+				+2.1
2,694,766	-				+0.4
2,694,767	+				+1.2
2,694,767	+				-0.4
2,694,767	+				+3.3
2,694,767	+				+0.9
2,694,767	+				-1.4
2,694,767	+				+1.9
2,694,767	+				-1.4
2,694,767	+				+3.1
2,694,767	+				-0.6
2,694,767	+				-2.3
2,694,767	+				+2.6
2,694,768	-				+2.2
2,694,768	-				-1.6
2,694,768	-				-0.4
2,694,768	-				-2.0
2,694,768	-				-0.9
2,694,768	-				-2.2
2,694,768	-				-2.1
2,694,768	-				-0.1
2,694,768	-				-1.3
2,694,768	-				-2.1
2,694,768	-				-0.4
2,694,771	+				+0.3
2,694,771	+				-0.9
2,694,771	+				-2.0
2,694,771	+				-1.1
2,694,771	+				+1.3
2,694,771	+				-0.7
2,694,771	+				-1.1
2,694,772	-				-0.3
2,694,772	-				+1.3
2,694,772	-				-2.6
2,694,772	-				+3.6
2,694,772	-				-0.3
2,694,772	-				+1.6
2,694,772	-				-1.9
2,694,772	-				-0.9
2,694,772	-				-1.6
2,694,772	-				-1.3
2,694,791	-				-1.6
2,694,791	-				+0.5
2,694,791	-				-2.1
2,694,803	+				-0.0
2,694,845	+				-0.0
2,694,846	-				-1.6
2,694,853	+				-0.7
2,694,853	+				+1.6
2,694,853	+				-0.9
2,694,853	+				-1.4
2,694,853	+				-1.6
2,694,854	-				+1.0
2,694,854	-				-1.1
2,694,854	-				-0.4
2,694,858	+				-1.4
2,694,859	-				-0.4
2,694,859	-				+3.4
2,694,867	+				+1.2
2,694,867	+				+3.5
2,694,867	+				-0.7
2,694,867	+				-1.7
2,694,867	+				+0.9
2,694,867	+				+2.9
2,694,867	+				+1.3
2,694,868	-				-1.4
2,694,868	-				-0.1
2,694,868	-				+0.9
2,694,891	+				+0.9
2,694,891	+				-2.4
2,694,891	+				-0.4
2,694,891	+				-1.7
2,694,891	+				+2.6
2,694,891	+				+1.5
2,694,891	+				-1.4
2,694,891	+				+0.4
2,694,891	+				+1.1
2,694,891	+				-2.0
2,694,891	+				-1.9
2,694,891	+				+0.3
2,694,892	-				+3.2
2,694,892	-				+2.2
2,694,892	-				-0.5
2,694,892	-				-0.1
2,694,892	-				+0.9
2,694,904	+				+1.9
2,694,904	+				+2.0
2,694,904	+				+0.3
2,694,904	+				+3.3
2,694,904	+				-1.8
2,694,905	-				-0.9
2,694,905	-				+0.6
2,694,905	-				+0.9
2,694,905	-				-0.4
2,694,905	-				-1.3
2,694,905	-				-0.2
2,694,905	-				-0.6
2,694,905	-				+4.7
2,694,959	+		PFLU_RS12145	0.16	+0.9
2,694,959	+		PFLU_RS12145	0.16	-2.2
2,694,959	+		PFLU_RS12145	0.16	-0.9
2,694,994	-		PFLU_RS12145	0.30	-2.4
2,695,153	+				+0.3
2,695,153	+				+3.7
2,695,153	+				+1.8
2,695,153	+				-0.1
2,695,153	+				+2.5
2,695,153	+				-0.4
2,695,153	+				+0.9
2,695,153	+				+2.5
2,695,153	+				-1.3
2,695,153	+				+0.9
2,695,153	+				-0.7
2,695,153	+				+1.6
2,695,153	+				+5.0
2,695,153	+				-2.0
2,695,153	+				-1.1
2,695,153	+				-1.3
2,695,153	+				+0.9
2,695,154	-				+0.7
2,695,154	-				-0.7
2,695,154	-				-0.6
2,695,154	-				+0.9
2,695,154	-				+0.9
2,695,154	-				-0.1
2,695,154	-				-1.3
2,695,154	-				-1.8
2,695,154	-				-0.1
2,695,154	-				+0.2
2,695,154	-				-1.4
2,695,154	-				-0.7
2,695,154	-				+1.5
2,695,154	-				+0.9
2,695,154	-				-0.4
2,695,157	+				-1.1
2,695,157	+				+2.9
2,695,157	+				-1.4
2,695,157	+				-0.7
2,695,158	-				+0.9
2,695,158	-				+0.6
2,695,158	-				+2.2
2,695,158	-				+0.1
2,695,158	-				+0.3
2,695,175	-				+0.3