Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24505

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
5,488,400	+				-0.0
5,488,400	+				+0.1
5,488,400	+				+2.9
5,488,400	+				+0.9
5,488,400	+				-0.7
5,488,400	+				+1.9
5,488,400	+				-0.9
5,488,400	+				-2.0
5,488,400	+				+1.4
5,488,400	+				+2.6
5,488,401	-				+1.1
5,488,401	-				-0.8
5,488,401	-				+1.0
5,488,401	-				-1.4
5,488,401	-				-0.5
5,488,401	-				-2.5
5,488,401	-				+0.7
5,488,401	-				-0.2
5,488,401	-				-1.5
5,488,402	+				+0.8
5,488,402	+				+1.4
5,488,402	+				-0.4
5,488,403	-				-0.0
5,488,404	+				+0.7
5,488,404	+				-2.1
5,488,404	+				-0.0
5,488,404	+				-1.4
5,488,405	-				+0.0
5,488,405	-				-0.8
5,488,414	-				+0.3
5,488,611	+				-0.2
5,488,611	+				-1.0
5,488,722	+				+0.1
5,488,776	-				-1.9
5,488,776	-				+1.3
5,488,835	+				-2.4
5,488,835	+				-0.3
5,488,902	+				+1.7
5,488,902	+				+0.3
5,488,917	+				-2.5
5,488,924	+				+1.0
5,488,924	+				-1.8
5,488,924	+				+1.1
5,488,924	+				-0.6
5,488,924	+				-1.1
5,488,925	-				-1.8
5,488,925	-				-2.1
5,488,925	-				-1.7
5,488,925	-				+3.1
5,488,928	+				-0.9
5,488,929	-				+0.3
5,488,929	-				+1.0
5,488,929	-				+2.1
5,488,929	-				+0.8
5,488,951	-				+0.5
5,488,951	-				-1.5
5,488,951	-				-0.2
5,488,956	+				-1.7
5,488,956	+				+2.4
5,488,956	+				+1.6
5,488,956	+				-1.3
5,488,956	+				-1.2
5,488,956	+				-1.0
5,488,956	+				+0.4
5,488,956	+				-1.0
5,488,956	+				+0.3
5,488,956	+				-1.3
5,488,956	+				-2.1
5,488,956	+				-2.2
5,488,957	-				-0.0
5,488,957	-				+1.2
5,488,957	-				+1.0
5,488,957	-				+0.8
5,488,957	-				+0.6
5,489,004	+				-0.3
5,489,004	+				-0.7
5,489,004	+				+2.3
5,489,005	-				+2.4
5,489,005	-				-0.2
5,489,138	+				+0.1
5,489,203	+				-1.5
5,489,203	+				-1.2
5,489,203	+				+1.8
5,489,203	+				+0.1
5,489,203	+				+1.0
5,489,203	+				-1.9
5,489,204	-				-0.4
5,489,204	-				+2.0
5,489,204	-				+0.6
5,489,204	-				+2.0
5,489,225	+				+0.1
5,489,225	+				+1.2
5,489,225	+				-0.8
5,489,225	+				-0.4
5,489,225	+				+1.6
5,489,225	+				+1.5
5,489,225	+				+0.2
5,489,225	+				+1.1
5,489,225	+				-1.6
5,489,225	+				+3.1
5,489,225	+				+1.4
5,489,225	+				+2.5
5,489,225	+				+1.3
5,489,225	+				-0.5
5,489,225	+				+0.3
5,489,225	+				+1.0
5,489,225	+				-1.5
5,489,225	+				+0.7
5,489,226	-				-1.4
5,489,226	-				-0.8
5,489,226	-				-1.6
5,489,226	-				+0.1
5,489,226	-				-0.8
5,489,226	-				+3.3
5,489,226	-				-1.2
5,489,226	-				-0.3
5,489,226	-				+0.4
5,489,226	-				-1.7
5,489,226	-				+0.1
5,489,226	-				-1.3
5,489,226	-				+0.4
5,489,246	-				-0.8
5,489,253	-				+2.5
5,489,253	-				-1.3
5,489,294	-				+3.6
5,489,296	+				-1.3
5,489,296	+				-0.1
5,489,297	-				-1.1
5,489,297	-				+1.6
5,489,297	-				-0.8
5,489,297	-				+1.1
5,489,306	+				-3.1
5,489,307	-				+1.3
5,489,307	-				-1.3
5,489,307	-				-0.0
5,489,307	-				+1.7
5,489,318	-				+0.4
5,489,327	+				-1.5
5,489,327	+				+0.4
5,489,327	+				-0.6
5,489,327	+				+1.4
5,489,327	+				-0.3
5,489,327	+				+1.3
5,489,328	-				-0.3
5,489,328	-				-1.3
5,489,328	-				+1.1
5,489,328	-				-1.1
5,489,328	-				+2.5
5,489,328	-				-0.4
5,489,328	-				+3.1
5,489,328	-				+0.2
5,489,328	-				-0.6
5,489,340	+				+1.6
5,489,341	-				+0.3
5,489,341	-				+0.4
5,489,341	-				-1.1
5,489,341	-				+0.8
5,489,341	-				-1.7
5,489,471	+				+2.8
5,489,471	+				-0.1
5,489,471	+				-1.8
5,489,561	+				-0.4
5,489,562	-				+0.4
5,489,646	+		PFLU_RS24505	0.10	-0.3
5,489,646	+		PFLU_RS24505	0.10	-1.1
5,489,647	-		PFLU_RS24505	0.10	-0.7
5,489,647	-		PFLU_RS24505	0.10	-1.3
5,489,675	+		PFLU_RS24505	0.11	-2.1
5,489,676	-		PFLU_RS24505	0.11	-0.4
5,489,790	+		PFLU_RS24505	0.16	-1.8
5,489,790	+		PFLU_RS24505	0.16	-1.8
5,489,790	+		PFLU_RS24505	0.16	-1.3
5,489,790	+		PFLU_RS24505	0.16	-1.4
5,489,790	+		PFLU_RS24505	0.16	-0.5
5,489,790	+		PFLU_RS24505	0.16	-1.5
5,489,790	+		PFLU_RS24505	0.16	-0.8
5,489,790	+		PFLU_RS24505	0.16	+0.1
5,489,790	+		PFLU_RS24505	0.16	-1.9
5,489,791	-		PFLU_RS24505	0.16	+0.4
5,489,791	-		PFLU_RS24505	0.16	-1.3
5,489,791	-		PFLU_RS24505	0.16	+0.7
5,489,791	-		PFLU_RS24505	0.16	+0.1
5,489,791	-		PFLU_RS24505	0.16	+0.8
5,489,791	-		PFLU_RS24505	0.16	+0.2
5,489,791	-		PFLU_RS24505	0.16	-0.2
5,489,791	-		PFLU_RS24505	0.16	-2.1
5,489,791	-		PFLU_RS24505	0.16	-1.7
5,489,791	-		PFLU_RS24505	0.16	-0.7
5,489,791	-		PFLU_RS24505	0.16	+0.4
5,489,791	-		PFLU_RS24505	0.16	-0.7
5,489,791	-		PFLU_RS24505	0.16	-1.1
5,489,791	-		PFLU_RS24505	0.16	-1.8
5,489,791	-		PFLU_RS24505	0.16	+0.1
5,489,791	-		PFLU_RS24505	0.16	-1.1
5,489,791	-		PFLU_RS24505	0.16	+0.2
5,489,792	+		PFLU_RS24505	0.16	-1.9
5,489,792	+		PFLU_RS24505	0.16	-1.1
5,489,792	+		PFLU_RS24505	0.16	+0.5
5,489,792	+		PFLU_RS24505	0.16	+0.7
5,489,792	+		PFLU_RS24505	0.16	+0.4
5,489,792	+		PFLU_RS24505	0.16	-0.8
5,489,792	+		PFLU_RS24505	0.16	+0.8
5,489,792	+		PFLU_RS24505	0.16	-2.0
5,489,792	+		PFLU_RS24505	0.16	-0.8
5,489,792	+		PFLU_RS24505	0.16	-0.9
5,489,792	+		PFLU_RS24505	0.16	+0.8
5,489,792	+		PFLU_RS24505	0.16	-0.8
5,489,792	+		PFLU_RS24505	0.16	-0.8
5,489,792	+		PFLU_RS24505	0.16	-1.3
5,489,792	+		PFLU_RS24505	0.16	-0.6
5,489,792	+		PFLU_RS24505	0.16	+0.2
5,489,793	-		PFLU_RS24505	0.16	+2.9
5,489,793	-		PFLU_RS24505	0.16	-1.7
5,489,793	-		PFLU_RS24505	0.16	-1.2
5,489,793	-		PFLU_RS24505	0.16	-0.3
5,489,793	-		PFLU_RS24505	0.16	-0.9
5,489,793	-		PFLU_RS24505	0.16	-1.3
5,489,793	-		PFLU_RS24505	0.16	+0.3
5,489,793	-		PFLU_RS24505	0.16	+0.5
5,489,793	-		PFLU_RS24505	0.16	-0.1
5,489,793	-		PFLU_RS24505	0.16	-1.2
5,489,793	-		PFLU_RS24505	0.16	+0.2
5,489,921	+		PFLU_RS24505	0.21	+2.1
5,489,921	+		PFLU_RS24505	0.21	-0.6
5,489,921	+		PFLU_RS24505	0.21	-0.2
5,489,921	+		PFLU_RS24505	0.21	+1.2
5,489,921	+		PFLU_RS24505	0.21	-2.4
5,489,921	+		PFLU_RS24505	0.21	-2.2
5,489,921	+		PFLU_RS24505	0.21	+2.4
5,489,921	+		PFLU_RS24505	0.21	-0.4
5,489,921	+		PFLU_RS24505	0.21	+1.6
5,489,921	+		PFLU_RS24505	0.21	-0.4
5,489,922	-		PFLU_RS24505	0.21	-2.1
5,489,922	-		PFLU_RS24505	0.21	-1.3
5,489,922	-		PFLU_RS24505	0.21	-1.5
5,489,922	-		PFLU_RS24505	0.21	-2.3
5,489,922	-		PFLU_RS24505	0.21	-1.2
5,489,922	-		PFLU_RS24505	0.21	+0.9
5,489,922	-		PFLU_RS24505	0.21	+0.4
5,489,922	-		PFLU_RS24505	0.21	-0.2
5,489,922	-		PFLU_RS24505	0.21	+0.5
5,489,922	-		PFLU_RS24505	0.21	+1.2
5,489,922	-		PFLU_RS24505	0.21	-1.9
5,490,002	+		PFLU_RS24505	0.24	-0.1
5,490,002	+		PFLU_RS24505	0.24	+2.0
5,490,002	+		PFLU_RS24505	0.24	-0.9
5,490,002	+		PFLU_RS24505	0.24	+2.5
5,490,003	-		PFLU_RS24505	0.24	-1.6
5,490,003	-		PFLU_RS24505	0.24	+0.3
5,490,003	-		PFLU_RS24505	0.24	+3.5
5,490,065	-		PFLU_RS24505	0.26	-1.1
5,490,149	+		PFLU_RS24505	0.29	+0.4
5,490,149	+		PFLU_RS24505	0.29	+1.3
5,490,149	+		PFLU_RS24505	0.29	+0.5
5,490,149	+		PFLU_RS24505	0.29	-0.9
5,490,149	+		PFLU_RS24505	0.29	-0.8
5,490,149	+		PFLU_RS24505	0.29	-1.5
5,490,149	+		PFLU_RS24505	0.29	+0.1
5,490,149	+		PFLU_RS24505	0.29	-2.7
5,490,149	+		PFLU_RS24505	0.29	-0.4
5,490,149	+		PFLU_RS24505	0.29	-1.7
5,490,149	+		PFLU_RS24505	0.29	+2.6
5,490,149	+		PFLU_RS24505	0.29	+1.6
5,490,149	+		PFLU_RS24505	0.29	+1.0
5,490,149	+		PFLU_RS24505	0.29	-1.1
5,490,150	-		PFLU_RS24505	0.29	+0.1
5,490,150	-		PFLU_RS24505	0.29	-1.3
5,490,150	-		PFLU_RS24505	0.29	-2.5
5,490,150	-		PFLU_RS24505	0.29	-2.1
5,490,150	-		PFLU_RS24505	0.29	-0.1
5,490,150	-		PFLU_RS24505	0.29	-1.1
5,490,150	-		PFLU_RS24505	0.29	-2.2
5,490,150	-		PFLU_RS24505	0.29	-0.4
5,490,150	-		PFLU_RS24505	0.29	-1.2
5,490,150	-		PFLU_RS24505	0.29	-2.1
5,490,151	+		PFLU_RS24505	0.29	-0.7
5,490,151	+		PFLU_RS24505	0.29	-0.6
5,490,151	+		PFLU_RS24505	0.29	-0.7
5,490,151	+		PFLU_RS24505	0.29	+1.2
5,490,151	+		PFLU_RS24505	0.29	+1.4
5,490,151	+		PFLU_RS24505	0.29	-3.0
5,490,151	+		PFLU_RS24505	0.29	-0.4
5,490,151	+		PFLU_RS24505	0.29	-0.4
5,490,151	+		PFLU_RS24505	0.29	-1.9
5,490,151	+		PFLU_RS24505	0.29	-0.9
5,490,151	+		PFLU_RS24505	0.29	-1.1
5,490,151	+		PFLU_RS24505	0.29	-1.1
5,490,151	+		PFLU_RS24505	0.29	-1.2
5,490,151	+		PFLU_RS24505	0.29	-1.2
5,490,151	+		PFLU_RS24505	0.29	-0.9
5,490,151	+		PFLU_RS24505	0.29	+0.4
5,490,151	+		PFLU_RS24505	0.29	+1.1
5,490,151	+		PFLU_RS24505	0.29	-0.5
5,490,152	-		PFLU_RS24505	0.29	-0.8
5,490,152	-		PFLU_RS24505	0.29	-0.2
5,490,152	-		PFLU_RS24505	0.29	-0.3
5,490,152	-		PFLU_RS24505	0.29	+3.0
5,490,152	-		PFLU_RS24505	0.29	-1.6
5,490,152	-		PFLU_RS24505	0.29	-1.2
5,490,152	-		PFLU_RS24505	0.29	-0.1
5,490,152	-		PFLU_RS24505	0.29	+1.3
5,490,152	-		PFLU_RS24505	0.29	+2.1
5,490,152	-		PFLU_RS24505	0.29	+0.1
5,490,152	-		PFLU_RS24505	0.29	-1.6
5,490,152	-		PFLU_RS24505	0.29	+2.4
5,490,152	-		PFLU_RS24505	0.29	-0.3
5,490,152	-		PFLU_RS24505	0.29	+2.2
5,490,152	-		PFLU_RS24505	0.29	+0.2
5,490,152	-		PFLU_RS24505	0.29	-2.7
5,490,152	-		PFLU_RS24505	0.29	+0.1
5,490,152	-		PFLU_RS24505	0.29	-1.3
5,490,152	-		PFLU_RS24505	0.29	+1.3
5,490,152	-		PFLU_RS24505	0.29	+2.4
5,490,197	+		PFLU_RS24505	0.31	+1.2
5,490,197	+		PFLU_RS24505	0.31	+0.1
5,490,197	+		PFLU_RS24505	0.31	+2.5
5,490,198	-		PFLU_RS24505	0.31	-1.1
5,490,198	-		PFLU_RS24505	0.31	-1.3
5,490,198	-		PFLU_RS24505	0.31	-1.7
5,490,234	+		PFLU_RS24505	0.32	-1.6
5,490,234	+		PFLU_RS24505	0.32	+0.5
5,490,234	+		PFLU_RS24505	0.32	+0.9
5,490,235	-		PFLU_RS24505	0.32	-0.9
5,490,235	-		PFLU_RS24505	0.32	-1.2
5,490,235	-		PFLU_RS24505	0.32	+0.1
5,490,235	-		PFLU_RS24505	0.32	-1.6
5,490,235	-		PFLU_RS24505	0.32	-1.4
5,490,286	+		PFLU_RS24505	0.34	+0.1
5,490,326	+		PFLU_RS24505	0.36	-0.8
5,490,327	-		PFLU_RS24505	0.36	+1.2
5,490,338	+		PFLU_RS24505	0.36	-2.4
5,490,338	+		PFLU_RS24505	0.36	-0.6
5,490,338	+		PFLU_RS24505	0.36	-0.0
5,490,338	+		PFLU_RS24505	0.36	+0.7
5,490,338	+		PFLU_RS24505	0.36	-2.2
5,490,338	+		PFLU_RS24505	0.36	-0.3
5,490,338	+		PFLU_RS24505	0.36	+1.8
5,490,338	+		PFLU_RS24505	0.36	+1.3
5,490,338	+		PFLU_RS24505	0.36	+0.1
5,490,338	+		PFLU_RS24505	0.36	-0.2
5,490,338	+		PFLU_RS24505	0.36	-2.5
5,490,338	+		PFLU_RS24505	0.36	-1.6
5,490,338	+		PFLU_RS24505	0.36	+0.2
5,490,338	+		PFLU_RS24505	0.36	+2.0
5,490,338	+		PFLU_RS24505	0.36	-0.4
5,490,338	+		PFLU_RS24505	0.36	+0.8
5,490,338	+		PFLU_RS24505	0.36	+1.2
5,490,338	+		PFLU_RS24505	0.36	+2.6
5,490,338	+		PFLU_RS24505	0.36	-0.9
5,490,338	+		PFLU_RS24505	0.36	-1.4
5,490,338	+		PFLU_RS24505	0.36	-0.2
5,490,338	+		PFLU_RS24505	0.36	-0.2
5,490,338	+		PFLU_RS24505	0.36	-0.2
5,490,339	-		PFLU_RS24505	0.36	-2.5
5,490,339	-		PFLU_RS24505	0.36	-0.4
5,490,339	-		PFLU_RS24505	0.36	-2.1
5,490,339	-		PFLU_RS24505	0.36	+0.5
5,490,339	-		PFLU_RS24505	0.36	-0.9
5,490,339	-		PFLU_RS24505	0.36	+0.9
5,490,339	-		PFLU_RS24505	0.36	+0.6
5,490,339	-		PFLU_RS24505	0.36	-1.2
5,490,339	-		PFLU_RS24505	0.36	+1.7
5,490,339	-		PFLU_RS24505	0.36	-1.1
5,490,339	-		PFLU_RS24505	0.36	-0.2
5,490,339	-		PFLU_RS24505	0.36	+3.6
5,490,339	-		PFLU_RS24505	0.36	-0.6
5,490,339	-		PFLU_RS24505	0.36	+1.3
5,490,339	-		PFLU_RS24505	0.36	-2.3
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5,492,046	-				+2.0
5,492,046	-				+1.2
5,492,046	-				+1.3
5,492,046	-				+0.8
5,492,046	-				-1.0
5,492,046	-				-0.8
5,492,046	-				+1.2
5,492,046	-				-1.9
5,492,046	-				+0.8
5,492,046	-				+0.8
5,492,046	-				-2.5
5,492,046	-				-1.8
5,492,046	-				+2.0
5,492,046	-				-0.6
5,492,057	+				-1.3
5,492,057	+				-1.0
5,492,057	+				+3.5
5,492,057	+				-1.6
5,492,058	-				-0.6
5,492,058	-				-0.1
5,492,058	-				+2.2
5,492,058	-				-1.2
5,492,058	-				-1.3
5,492,058	-				+2.0
5,492,096	-				-1.5
5,492,602	+		PFLU_RS24510	0.45	-1.5
5,492,602	+		PFLU_RS24510	0.45	+0.1
5,492,602	+		PFLU_RS24510	0.45	-0.0
5,492,603	-		PFLU_RS24510	0.45	+0.2
5,492,697	-		PFLU_RS24510	0.53	-0.4
5,492,830	+		PFLU_RS24510	0.63	-0.6
5,492,831	-		PFLU_RS24510	0.63	-2.8
5,492,831	-		PFLU_RS24510	0.63	-0.3
5,492,831	-		PFLU_RS24510	0.63	-2.8
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5,492,833	+		PFLU_RS24510	0.63	+0.2
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5,492,833	+		PFLU_RS24510	0.63	-0.0
5,492,833	+		PFLU_RS24510	0.63	-1.4
5,492,834	-		PFLU_RS24510	0.63	+2.8
5,492,834	-		PFLU_RS24510	0.63	+2.1
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5,492,834	-		PFLU_RS24510	0.63	-0.2
5,492,834	-		PFLU_RS24510	0.63	-0.4
5,492,954	+		PFLU_RS24510	0.73	-2.3
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5,492,954	+		PFLU_RS24510	0.73	-0.6
5,492,955	-		PFLU_RS24510	0.73	+0.4
5,492,955	-		PFLU_RS24510	0.73	-1.0
5,492,955	-		PFLU_RS24510	0.73	-0.0
5,492,955	-		PFLU_RS24510	0.73	-0.8
5,492,955	-		PFLU_RS24510	0.73	-0.4
5,492,955	-		PFLU_RS24510	0.73	+0.1
5,492,968	+		PFLU_RS24510	0.74	+1.2
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5,492,968	+		PFLU_RS24510	0.74	-0.3
5,492,968	+		PFLU_RS24510	0.74	+0.5
5,492,968	+		PFLU_RS24510	0.74	+2.3
5,492,968	+		PFLU_RS24510	0.74	+1.5
5,492,968	+		PFLU_RS24510	0.74	+0.1
5,492,968	+		PFLU_RS24510	0.74	-0.3
5,492,968	+		PFLU_RS24510	0.74	-0.9
5,492,968	+		PFLU_RS24510	0.74	+0.8
5,492,968	+		PFLU_RS24510	0.74	-1.1
5,492,968	+		PFLU_RS24510	0.74	-0.4
5,492,969	-		PFLU_RS24510	0.74	-0.8
5,492,969	-		PFLU_RS24510	0.74	-0.4
5,492,969	-		PFLU_RS24510	0.74	-0.0
5,492,969	-		PFLU_RS24510	0.74	-0.8
5,492,969	-		PFLU_RS24510	0.74	-1.2
5,492,969	-		PFLU_RS24510	0.74	+1.3
5,492,969	-		PFLU_RS24510	0.74	-0.9
5,492,969	-		PFLU_RS24510	0.74	-1.9
5,492,969	-		PFLU_RS24510	0.74	-1.8
5,492,969	-		PFLU_RS24510	0.74	-1.9
5,492,969	-		PFLU_RS24510	0.74	-1.1
5,492,969	-		PFLU_RS24510	0.74	-2.3
5,492,969	-		PFLU_RS24510	0.74	+0.4