Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24440

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
5,475,853	+		PFLU_RS24435	0.56	-1.3
5,475,853	+		PFLU_RS24435	0.56	-1.1
5,475,886	+		PFLU_RS24435	0.58	+2.5
5,475,886	+		PFLU_RS24435	0.58	-1.2
5,475,887	-		PFLU_RS24435	0.58	+3.1
5,475,887	-		PFLU_RS24435	0.58	-1.5
5,475,887	-		PFLU_RS24435	0.58	+3.4
5,475,887	-		PFLU_RS24435	0.58	+1.9
5,475,887	-		PFLU_RS24435	0.58	-0.2
5,475,887	-		PFLU_RS24435	0.58	-1.2
5,475,887	-		PFLU_RS24435	0.58	+2.0
5,475,887	-		PFLU_RS24435	0.58	-1.7
5,475,897	+		PFLU_RS24435	0.58	+1.6
5,475,897	+		PFLU_RS24435	0.58	-1.2
5,475,897	+		PFLU_RS24435	0.58	+0.1
5,475,897	+		PFLU_RS24435	0.58	-2.1
5,475,897	+		PFLU_RS24435	0.58	+1.4
5,475,898	-		PFLU_RS24435	0.58	+1.0
5,475,898	-		PFLU_RS24435	0.58	-0.4
5,475,898	-		PFLU_RS24435	0.58	+3.0
5,475,898	-		PFLU_RS24435	0.58	+1.8
5,475,898	-		PFLU_RS24435	0.58	+0.1
5,476,006	+		PFLU_RS24435	0.64	-0.4
5,476,006	+		PFLU_RS24435	0.64	-0.5
5,476,006	+		PFLU_RS24435	0.64	+0.9
5,476,006	+		PFLU_RS24435	0.64	-1.1
5,476,006	+		PFLU_RS24435	0.64	-1.6
5,476,006	+		PFLU_RS24435	0.64	-0.8
5,476,006	+		PFLU_RS24435	0.64	-1.9
5,476,006	+		PFLU_RS24435	0.64	+0.4
5,476,007	-		PFLU_RS24435	0.64	+2.4
5,476,007	-		PFLU_RS24435	0.64	+1.8
5,476,007	-		PFLU_RS24435	0.64	+0.4
5,476,008	+		PFLU_RS24435	0.64	-1.7
5,476,008	+		PFLU_RS24435	0.64	-0.8
5,476,008	+		PFLU_RS24435	0.64	-1.1
5,476,009	-		PFLU_RS24435	0.64	+0.4
5,476,009	-		PFLU_RS24435	0.64	+2.0
5,476,009	-		PFLU_RS24435	0.64	-0.3
5,476,039	+		PFLU_RS24435	0.66	+0.4
5,476,039	+		PFLU_RS24435	0.66	-0.8
5,476,040	-		PFLU_RS24435	0.66	-1.0
5,476,040	-		PFLU_RS24435	0.66	-0.4
5,476,096	+		PFLU_RS24435	0.68	-2.5
5,476,096	+		PFLU_RS24435	0.68	-1.1
5,476,097	-		PFLU_RS24435	0.69	+4.2
5,476,097	-		PFLU_RS24435	0.69	-1.8
5,476,103	-		PFLU_RS24435	0.69	+0.5
5,476,159	+		PFLU_RS24435	0.72	+0.6
5,476,159	+		PFLU_RS24435	0.72	-0.2
5,476,160	-		PFLU_RS24435	0.72	+1.9
5,476,160	-		PFLU_RS24435	0.72	+2.0
5,476,160	-		PFLU_RS24435	0.72	+1.2
5,476,160	-		PFLU_RS24435	0.72	+0.3
5,476,160	-		PFLU_RS24435	0.72	-1.6
5,476,281	+		PFLU_RS24435	0.78	-1.8
5,476,281	+		PFLU_RS24435	0.78	+3.4
5,476,281	+		PFLU_RS24435	0.78	-0.8
5,476,281	+		PFLU_RS24435	0.78	-0.7
5,476,282	-		PFLU_RS24435	0.78	-1.4
5,476,291	+		PFLU_RS24435	0.78	-1.9
5,476,292	-		PFLU_RS24435	0.79	+1.5
5,476,292	-		PFLU_RS24435	0.79	+1.4
5,476,312	+		PFLU_RS24435	0.80	-0.1
5,476,312	+		PFLU_RS24435	0.80	+1.9
5,476,312	+		PFLU_RS24435	0.80	+1.9
5,476,312	+		PFLU_RS24435	0.80	-1.1
5,476,312	+		PFLU_RS24435	0.80	+0.8
5,476,312	+		PFLU_RS24435	0.80	+3.1
5,476,312	+		PFLU_RS24435	0.80	-0.2
5,476,312	+		PFLU_RS24435	0.80	-3.2
5,476,312	+		PFLU_RS24435	0.80	+3.3
5,476,312	+		PFLU_RS24435	0.80	-2.1
5,476,312	+		PFLU_RS24435	0.80	-0.1
5,476,313	-		PFLU_RS24435	0.80	-0.9
5,476,313	-		PFLU_RS24435	0.80	-2.1
5,476,313	-		PFLU_RS24435	0.80	+1.2
5,476,313	-		PFLU_RS24435	0.80	-1.6
5,476,313	-		PFLU_RS24435	0.80	+0.5
5,476,313	-		PFLU_RS24435	0.80	+1.8
5,476,313	-		PFLU_RS24435	0.80	+1.3
5,476,313	-		PFLU_RS24435	0.80	-2.2
5,476,405	+		PFLU_RS24435	0.84	-1.3
5,476,405	+		PFLU_RS24435	0.84	-2.0
5,476,405	+		PFLU_RS24435	0.84	+1.8
5,476,406	-		PFLU_RS24435	0.84	+0.8
5,476,406	-		PFLU_RS24435	0.84	-2.1
5,476,406	-		PFLU_RS24435	0.84	+2.3
5,476,406	-		PFLU_RS24435	0.84	-1.1
5,476,406	-		PFLU_RS24435	0.84	-0.1
5,476,406	-		PFLU_RS24435	0.84	-0.7
5,476,463	+		PFLU_RS24435	0.87	+2.0
5,476,463	+		PFLU_RS24435	0.87	+0.2
5,476,464	-		PFLU_RS24435	0.87	-0.4
5,476,464	-		PFLU_RS24435	0.87	+2.1
5,476,473	+		PFLU_RS24435	0.88	-1.4
5,476,473	+		PFLU_RS24435	0.88	-0.6
5,476,477	+		PFLU_RS24435	0.88	+0.5
5,476,477	+		PFLU_RS24435	0.88	-0.1
5,476,477	+		PFLU_RS24435	0.88	-0.4
5,476,477	+		PFLU_RS24435	0.88	-0.9
5,476,477	+		PFLU_RS24435	0.88	-1.3
5,476,477	+		PFLU_RS24435	0.88	+0.2
5,476,477	+		PFLU_RS24435	0.88	+1.4
5,476,477	+		PFLU_RS24435	0.88	-1.1
5,476,477	+		PFLU_RS24435	0.88	-0.9
5,476,477	+		PFLU_RS24435	0.88	+0.2
5,476,478	-		PFLU_RS24435	0.88	-1.3
5,476,478	-		PFLU_RS24435	0.88	+1.2
5,476,478	-		PFLU_RS24435	0.88	+1.7
5,476,478	-		PFLU_RS24435	0.88	-0.2
5,476,478	-		PFLU_RS24435	0.88	+1.4
5,476,478	-		PFLU_RS24435	0.88	+0.8
5,476,621	+				+1.9
5,476,621	+				-1.6
5,476,621	+				+0.4
5,476,621	+				+0.8
5,476,621	+				+0.6
5,476,621	+				-1.1
5,476,621	+				+1.7
5,476,621	+				-0.8
5,476,621	+				+0.4
5,476,621	+				+0.8
5,476,621	+				-1.5
5,476,621	+				-1.2
5,476,622	-				+0.8
5,476,622	-				-0.8
5,476,622	-				-0.2
5,476,622	-				-0.4
5,476,622	-				-0.5
5,476,622	-				+0.4
5,476,624	+				-1.7
5,476,625	-				+0.4
5,476,625	-				+1.2
5,476,625	-				+3.7
5,476,625	-				-2.2
5,476,625	-				-2.4
5,476,625	-				+3.3
5,476,625	-				+3.3
5,476,639	+				+1.5
5,476,640	-				-2.5
5,476,658	+				+1.5
5,476,658	+				-1.7
5,476,659	-				-1.3
5,476,659	-				+1.9
5,476,659	-				+0.1
5,476,659	-				-0.9
5,476,659	-				+0.7
5,476,659	-				-0.9
5,476,659	-				+2.1
5,476,659	-				+1.3
5,476,659	-				+1.0
5,476,694	+				+0.3
5,476,695	-				+0.6
5,476,698	+				+0.6
5,476,698	+				-0.4
5,476,698	+				-0.6
5,476,698	+				-1.6
5,476,698	+				-0.8
5,476,698	+				-0.9
5,476,698	+				-0.4
5,476,698	+				+0.2
5,476,698	+				+0.1
5,476,698	+				-1.1
5,476,699	-				-0.8
5,476,699	-				-1.8
5,476,699	-				-0.3
5,476,699	-				-1.6
5,476,699	-				-2.0
5,476,699	-				+1.9
5,476,699	-				-2.1
5,476,823	-				-1.1
5,476,896	+		PFLU_RS24440	0.18	-0.4
5,476,896	+		PFLU_RS24440	0.18	-0.2
5,476,896	+		PFLU_RS24440	0.18	+2.8
5,476,896	+		PFLU_RS24440	0.18	-2.2
5,476,897	-		PFLU_RS24440	0.18	+1.6
5,476,897	-		PFLU_RS24440	0.18	+0.9
5,476,897	-		PFLU_RS24440	0.18	-1.8
5,476,929	+		PFLU_RS24440	0.23	+1.9
5,476,929	+		PFLU_RS24440	0.23	+1.9
5,476,929	+		PFLU_RS24440	0.23	-0.3
5,477,006	-		PFLU_RS24440	0.33	+2.1
5,477,024	+		PFLU_RS24440	0.36	+0.4
5,477,172	+		PFLU_RS24440	0.56	-1.4
5,477,172	+		PFLU_RS24440	0.56	+1.3
5,477,172	+		PFLU_RS24440	0.56	+0.1
5,477,173	-		PFLU_RS24440	0.56	+1.0
5,477,173	-		PFLU_RS24440	0.56	-0.9
5,477,392	+		PFLU_RS24440	0.86	-0.9
5,477,392	+		PFLU_RS24440	0.86	+1.2
5,477,392	+		PFLU_RS24440	0.86	+1.1
5,477,392	+		PFLU_RS24440	0.86	-0.3
5,477,392	+		PFLU_RS24440	0.86	-2.6
5,477,392	+		PFLU_RS24440	0.86	+0.4
5,477,392	+		PFLU_RS24440	0.86	-0.1
5,477,392	+		PFLU_RS24440	0.86	-2.1
5,477,392	+		PFLU_RS24440	0.86	+3.7
5,477,393	-		PFLU_RS24440	0.86	-1.5
5,477,393	-		PFLU_RS24440	0.86	-0.9
5,477,393	-		PFLU_RS24440	0.86	+0.3
5,477,393	-		PFLU_RS24440	0.86	+1.6
5,477,393	-		PFLU_RS24440	0.86	-0.6
5,477,393	-		PFLU_RS24440	0.86	-1.7
5,477,393	-		PFLU_RS24440	0.86	-1.6
5,477,393	-		PFLU_RS24440	0.86	-0.4
5,477,393	-		PFLU_RS24440	0.86	+0.2
5,477,434	-				+0.4
5,477,448	+				-0.3
5,477,448	+				+0.8
5,477,448	+				-1.7
5,477,496	+				+1.1
5,477,496	+				-0.9
5,477,496	+				-0.2
5,477,496	+				+0.1
5,477,496	+				-1.2
5,477,497	-				-1.6
5,477,592	-				-0.7
5,477,603	-				+0.1
5,477,603	-				-0.6
5,477,603	-				-0.8
5,477,603	-				-0.5
5,477,603	-				+1.8
5,477,603	-				+1.5
5,477,603	-				-0.4
5,477,603	-				-0.9
5,477,603	-				+0.4
5,477,603	-				+0.1
5,477,603	-				-0.9