Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS23750

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
5,321,633	-		PFLU_RS23745	0.36	-1.3
5,321,641	-		PFLU_RS23745	0.37	+0.8
5,321,705	+		PFLU_RS23745	0.42	+1.1
5,321,705	+		PFLU_RS23745	0.42	-1.2
5,321,706	-		PFLU_RS23745	0.42	+0.5
5,321,804	+		PFLU_RS23745	0.51	-0.7
5,321,804	+		PFLU_RS23745	0.51	+0.6
5,321,804	+		PFLU_RS23745	0.51	+0.5
5,321,804	+		PFLU_RS23745	0.51	-1.9
5,321,804	+		PFLU_RS23745	0.51	-0.9
5,321,804	+		PFLU_RS23745	0.51	-0.3
5,321,804	+		PFLU_RS23745	0.51	+1.4
5,321,805	-		PFLU_RS23745	0.51	-0.3
5,321,805	-		PFLU_RS23745	0.51	+1.6
5,321,805	-		PFLU_RS23745	0.51	+1.8
5,321,805	-		PFLU_RS23745	0.51	+0.8
5,321,906	+		PFLU_RS23745	0.60	-0.5
5,321,906	+		PFLU_RS23745	0.60	+1.3
5,321,906	+		PFLU_RS23745	0.60	-1.1
5,321,906	+		PFLU_RS23745	0.60	+1.4
5,321,906	+		PFLU_RS23745	0.60	-0.4
5,321,907	-		PFLU_RS23745	0.60	+0.1
5,321,907	-		PFLU_RS23745	0.60	-0.8
5,321,907	-		PFLU_RS23745	0.60	+1.8
5,321,907	-		PFLU_RS23745	0.60	-2.4
5,321,907	-		PFLU_RS23745	0.60	-2.3
5,321,907	-		PFLU_RS23745	0.60	-1.9
5,321,907	-		PFLU_RS23745	0.60	-1.9
5,321,907	-		PFLU_RS23745	0.60	+3.3
5,321,907	-		PFLU_RS23745	0.60	-1.6
5,321,907	-		PFLU_RS23745	0.60	-0.3
5,322,110	+		PFLU_RS23745	0.77	+1.4
5,322,111	-		PFLU_RS23745	0.77	-0.6
5,322,120	-		PFLU_RS23745	0.78	-0.2
5,322,120	-		PFLU_RS23745	0.78	+0.4
5,322,120	-		PFLU_RS23745	0.78	-0.8
5,322,247	-		PFLU_RS23745	0.89	-0.9
5,322,338	+				+2.4
5,322,338	+				+1.5
5,322,338	+				+3.8
5,322,338	+				-0.5
5,322,338	+				+0.3
5,322,338	+				+0.3
5,322,338	+				+1.1
5,322,339	-				-1.9
5,322,339	-				-0.3
5,322,339	-				-1.1
5,322,339	-				-0.6
5,322,339	-				-0.4
5,322,349	+				-0.8
5,322,349	+				-0.6
5,322,349	+				-0.6
5,322,350	-				-1.1
5,322,350	-				+0.4
5,322,350	-				+3.0
5,322,350	-				-1.4
5,322,350	-				+1.2
5,322,369	+				+0.4
5,322,370	-				+2.3
5,322,370	-				-1.8
5,322,370	-				-0.8
5,322,379	+				-1.8
5,322,418	+				-2.7
5,322,419	-				+0.1
5,322,419	-				-0.6
5,322,419	-				+0.4
5,322,436	+				+0.4
5,322,436	+				+0.1
5,322,436	+				-1.6
5,322,436	+				+1.1
5,322,436	+				+0.7
5,322,436	+				-0.0
5,322,436	+				-0.2
5,322,436	+				-0.6
5,322,437	-				-0.1
5,322,437	-				-1.5
5,322,437	-				-0.8
5,322,437	-				+0.4
5,322,437	-				+1.5
5,322,437	-				-1.7
5,322,488	+		PFLU_RS23750	0.13	+1.4
5,322,488	+		PFLU_RS23750	0.13	+2.6
5,322,488	+		PFLU_RS23750	0.13	+0.6
5,322,488	+		PFLU_RS23750	0.13	+0.1
5,322,488	+		PFLU_RS23750	0.13	+2.1
5,322,488	+		PFLU_RS23750	0.13	+0.5
5,322,489	-		PFLU_RS23750	0.13	-0.2
5,322,489	-		PFLU_RS23750	0.13	-0.8
5,322,489	-		PFLU_RS23750	0.13	-0.2
5,322,489	-		PFLU_RS23750	0.13	+0.1
5,322,489	-		PFLU_RS23750	0.13	+2.7
5,322,489	-		PFLU_RS23750	0.13	-0.3
5,322,489	-		PFLU_RS23750	0.13	-1.4
5,322,489	-		PFLU_RS23750	0.13	+2.3
5,322,489	-		PFLU_RS23750	0.13	+0.6
5,322,490	+		PFLU_RS23750	0.13	+2.7
5,322,490	+		PFLU_RS23750	0.13	-0.2
5,322,490	+		PFLU_RS23750	0.13	+0.6
5,322,491	-		PFLU_RS23750	0.13	+0.2
5,322,491	-		PFLU_RS23750	0.13	+1.7
5,322,491	-		PFLU_RS23750	0.13	+3.0
5,322,491	-		PFLU_RS23750	0.13	-0.1
5,322,491	-		PFLU_RS23750	0.13	-0.2
5,322,491	-		PFLU_RS23750	0.13	+0.5
5,322,730	+		PFLU_RS23750	0.42	+0.4
5,322,730	+		PFLU_RS23750	0.42	-0.3
5,322,730	+		PFLU_RS23750	0.42	-2.1
5,322,730	+		PFLU_RS23750	0.42	-0.2
5,322,730	+		PFLU_RS23750	0.42	-1.6
5,322,730	+		PFLU_RS23750	0.42	-1.9
5,322,730	+		PFLU_RS23750	0.42	-1.6
5,322,730	+		PFLU_RS23750	0.42	-1.2
5,322,730	+		PFLU_RS23750	0.42	+0.5
5,322,730	+		PFLU_RS23750	0.42	-0.8
5,322,730	+		PFLU_RS23750	0.42	+0.2
5,322,730	+		PFLU_RS23750	0.42	-1.5
5,322,730	+		PFLU_RS23750	0.42	-0.3
5,322,731	-		PFLU_RS23750	0.42	+1.4
5,322,731	-		PFLU_RS23750	0.42	-1.2
5,322,731	-		PFLU_RS23750	0.42	-0.8
5,322,731	-		PFLU_RS23750	0.42	-1.9
5,322,731	-		PFLU_RS23750	0.42	-2.4
5,322,731	-		PFLU_RS23750	0.42	-1.7
5,322,731	-		PFLU_RS23750	0.42	+2.4
5,322,731	-		PFLU_RS23750	0.42	+3.1
5,322,731	-		PFLU_RS23750	0.42	-1.2
5,322,731	-		PFLU_RS23750	0.42	+0.1
5,322,733	+		PFLU_RS23750	0.42	+2.9
5,322,733	+		PFLU_RS23750	0.42	+0.4
5,322,733	+		PFLU_RS23750	0.42	-2.0
5,322,733	+		PFLU_RS23750	0.42	-2.5
5,322,733	+		PFLU_RS23750	0.42	+3.4
5,322,733	+		PFLU_RS23750	0.42	+2.6
5,322,733	+		PFLU_RS23750	0.42	-1.2
5,322,733	+		PFLU_RS23750	0.42	-1.3
5,322,734	-		PFLU_RS23750	0.42	+2.9
5,322,734	-		PFLU_RS23750	0.42	+2.3
5,322,734	-		PFLU_RS23750	0.42	-1.1
5,322,734	-		PFLU_RS23750	0.42	+0.4
5,322,734	-		PFLU_RS23750	0.42	-0.0
5,322,734	-		PFLU_RS23750	0.42	+0.1
5,322,734	-		PFLU_RS23750	0.42	-0.2
5,322,734	-		PFLU_RS23750	0.42	-0.6
5,322,734	-		PFLU_RS23750	0.42	-1.1
5,322,734	-		PFLU_RS23750	0.42	+1.7
5,322,734	-		PFLU_RS23750	0.42	-1.7
5,322,734	-		PFLU_RS23750	0.42	-0.4
5,322,734	-		PFLU_RS23750	0.42	-1.0
5,322,734	-		PFLU_RS23750	0.42	-1.8
5,322,734	-		PFLU_RS23750	0.42	+2.5
5,322,734	-		PFLU_RS23750	0.42	+0.3
5,322,737	+		PFLU_RS23750	0.42	-1.2
5,322,737	+		PFLU_RS23750	0.42	-1.1
5,322,738	-		PFLU_RS23750	0.43	-1.5
5,322,769	+		PFLU_RS23750	0.46	+0.8
5,322,769	+		PFLU_RS23750	0.46	+2.5
5,322,849	+		PFLU_RS23750	0.56	-1.2
5,322,850	-		PFLU_RS23750	0.56	-0.6
5,322,851	-		PFLU_RS23750	0.56	+1.9
5,322,934	+		PFLU_RS23750	0.66	+3.6
5,322,934	+		PFLU_RS23750	0.66	+2.2
5,322,934	+		PFLU_RS23750	0.66	-0.6
5,322,934	+		PFLU_RS23750	0.66	-2.5
5,322,934	+		PFLU_RS23750	0.66	+1.1
5,322,934	+		PFLU_RS23750	0.66	-0.2
5,322,935	-		PFLU_RS23750	0.66	+1.6
5,322,935	-		PFLU_RS23750	0.66	+0.6
5,322,935	-		PFLU_RS23750	0.66	-1.3
5,322,935	-		PFLU_RS23750	0.66	-1.5
5,322,935	-		PFLU_RS23750	0.66	+0.6
5,322,935	-		PFLU_RS23750	0.66	+0.6
5,322,935	-		PFLU_RS23750	0.66	+4.3
5,323,006	+		PFLU_RS23750	0.74	-1.1
5,323,006	+		PFLU_RS23750	0.74	-0.7
5,323,007	-		PFLU_RS23750	0.74	-2.9
5,323,141	+				-0.6
5,323,141	+				-2.5
5,323,141	+				-0.3
5,323,142	-				+0.4
5,323,142	-				-0.6
5,323,142	-				-1.7
5,323,171	+				-0.4
5,323,171	+				-1.5
5,323,171	+				-2.3
5,323,171	+				+2.0
5,323,171	+				-0.4
5,323,171	+				-1.9
5,323,171	+				-0.6
5,323,171	+				-0.2
5,323,171	+				+0.2
5,323,171	+				-0.7
5,323,171	+				-0.4
5,323,171	+				-0.0
5,323,171	+				-0.1
5,323,172	-				+1.5
5,323,172	-				+1.3
5,323,172	-				-0.8
5,323,172	-				-0.2
5,323,172	-				-1.4
5,323,172	-				-0.8
5,323,172	-				-0.2
5,323,172	-				+1.4
5,323,172	-				+1.0
5,323,172	-				+1.0
5,323,172	-				+3.0
5,323,172	-				+1.4
5,323,217	+				-1.5
5,323,217	+				+0.6
5,323,218	-				+1.3
5,323,218	-				+2.4
5,323,218	-				-0.3
5,323,218	-				-1.3
5,323,218	-				-1.3
5,323,218	-				+0.8
5,323,218	-				+1.1
5,323,218	-				-0.7
5,323,218	-				+0.1
5,323,218	-				-0.1
5,323,224	+				+1.9
5,323,224	+				-1.3
5,323,224	+				+0.8
5,323,224	+				+2.2
5,323,224	+				-2.3
5,323,224	+				-0.1
5,323,224	+				+1.4
5,323,225	-				-0.0
5,323,225	-				-1.2
5,323,225	-				+1.5
5,323,225	-				+2.1
5,323,225	-				-1.3
5,323,225	-				-1.0
5,323,225	-				-0.6
5,323,247	+				+0.1
5,323,247	+				-0.8
5,323,247	+				-1.7
5,323,247	+				+0.5
5,323,248	-				+0.4
5,323,253	+				-1.1
5,323,253	+				-0.5
5,323,253	+				-1.9
5,323,254	-				+1.3
5,323,254	-				-1.6
5,323,254	-				+0.7
5,323,254	-				-1.3
5,323,254	-				+0.1
5,323,254	-				-2.1
5,323,254	-				+0.4
5,323,343	+		PFLU_RS23755	0.14	-2.1
5,323,343	+		PFLU_RS23755	0.14	+0.2
5,323,343	+		PFLU_RS23755	0.14	-1.8
5,323,343	+		PFLU_RS23755	0.14	+1.9
5,323,343	+		PFLU_RS23755	0.14	-1.2
5,323,343	+		PFLU_RS23755	0.14	+0.4
5,323,343	+		PFLU_RS23755	0.14	-0.4
5,323,344	-		PFLU_RS23755	0.14	-0.2
5,323,344	-		PFLU_RS23755	0.14	-1.7
5,323,344	-		PFLU_RS23755	0.14	-0.6
5,323,344	-		PFLU_RS23755	0.14	-0.4
5,323,344	-		PFLU_RS23755	0.14	+0.8
5,323,344	-		PFLU_RS23755	0.14	+2.1
5,323,344	-		PFLU_RS23755	0.14	+0.4
5,323,344	-		PFLU_RS23755	0.14	-0.4
5,323,344	-		PFLU_RS23755	0.14	+2.4
5,323,344	-		PFLU_RS23755	0.14	+0.8
5,323,374	-		PFLU_RS23755	0.17	+3.8
5,323,493	+		PFLU_RS23755	0.30	-0.4
5,323,493	+		PFLU_RS23755	0.30	-1.7
5,323,493	+		PFLU_RS23755	0.30	-0.7
5,323,493	+		PFLU_RS23755	0.30	-1.1
5,323,493	+		PFLU_RS23755	0.30	-1.9
5,323,493	+		PFLU_RS23755	0.30	+0.2
5,323,494	-		PFLU_RS23755	0.31	-0.9
5,323,494	-		PFLU_RS23755	0.31	-0.1
5,323,494	-		PFLU_RS23755	0.31	-2.7
5,323,625	+		PFLU_RS23755	0.45	-0.8
5,323,625	+		PFLU_RS23755	0.45	-0.8
5,323,625	+		PFLU_RS23755	0.45	-0.8
5,323,626	-		PFLU_RS23755	0.45	-0.9
5,323,775	+		PFLU_RS23755	0.61	-1.3
5,323,775	+		PFLU_RS23755	0.61	+1.6
5,323,775	+		PFLU_RS23755	0.61	-0.6
5,323,775	+		PFLU_RS23755	0.61	+1.0
5,323,775	+		PFLU_RS23755	0.61	-1.2
5,323,775	+		PFLU_RS23755	0.61	-1.1
5,323,775	+		PFLU_RS23755	0.61	+1.0
5,323,775	+		PFLU_RS23755	0.61	-1.7
5,323,775	+		PFLU_RS23755	0.61	-0.3
5,323,775	+		PFLU_RS23755	0.61	+0.6
5,323,775	+		PFLU_RS23755	0.61	-1.4
5,323,775	+		PFLU_RS23755	0.61	+1.8
5,323,775	+		PFLU_RS23755	0.61	-1.4
5,323,775	+		PFLU_RS23755	0.61	-1.8
5,323,775	+		PFLU_RS23755	0.61	+2.0
5,323,775	+		PFLU_RS23755	0.61	-1.7
5,323,776	-		PFLU_RS23755	0.62	+0.8
5,323,776	-		PFLU_RS23755	0.62	-0.2
5,323,776	-		PFLU_RS23755	0.62	+1.8
5,323,776	-		PFLU_RS23755	0.62	-1.2
5,323,776	-		PFLU_RS23755	0.62	-0.5
5,323,776	-		PFLU_RS23755	0.62	+1.0
5,323,776	-		PFLU_RS23755	0.62	-0.6
5,323,776	-		PFLU_RS23755	0.62	+3.1
5,323,776	-		PFLU_RS23755	0.62	-1.6
5,323,776	-		PFLU_RS23755	0.62	+0.7
5,323,776	-		PFLU_RS23755	0.62	+0.5
5,323,776	-		PFLU_RS23755	0.62	-0.6
5,323,931	+		PFLU_RS23755	0.79	+0.6
5,323,931	+		PFLU_RS23755	0.79	+1.9
5,323,931	+		PFLU_RS23755	0.79	-0.6
5,323,931	+		PFLU_RS23755	0.79	-1.1
5,323,931	+		PFLU_RS23755	0.79	-0.2
5,323,931	+		PFLU_RS23755	0.79	-2.5
5,323,931	+		PFLU_RS23755	0.79	+0.4
5,323,931	+		PFLU_RS23755	0.79	-1.1
5,323,932	-		PFLU_RS23755	0.79	+0.5
5,323,932	-		PFLU_RS23755	0.79	-0.9
5,323,932	-		PFLU_RS23755	0.79	-2.1
5,323,932	-		PFLU_RS23755	0.79	+0.4
5,323,932	-		PFLU_RS23755	0.79	-2.0
5,323,932	-		PFLU_RS23755	0.79	+1.2
5,323,932	-		PFLU_RS23755	0.79	+0.4
5,323,932	-		PFLU_RS23755	0.79	-0.6
5,323,932	-		PFLU_RS23755	0.79	+0.4
5,323,932	-		PFLU_RS23755	0.79	+0.1
5,323,955	+		PFLU_RS23755	0.81	+1.1
5,323,955	+		PFLU_RS23755	0.81	-0.6
5,323,956	-		PFLU_RS23755	0.81	-2.3
5,323,990	+		PFLU_RS23755	0.85	+0.8
5,323,990	+		PFLU_RS23755	0.85	-1.9
5,323,990	+		PFLU_RS23755	0.85	-0.8
5,323,990	+		PFLU_RS23755	0.85	-0.2
5,323,990	+		PFLU_RS23755	0.85	-1.3
5,323,991	-		PFLU_RS23755	0.85	+0.8
5,323,991	-		PFLU_RS23755	0.85	+0.3
5,323,991	-		PFLU_RS23755	0.85	+1.6
5,323,991	-		PFLU_RS23755	0.85	-0.7
5,324,009	+		PFLU_RS23755	0.87	-1.5
5,324,009	+		PFLU_RS23755	0.87	-0.2
5,324,009	+		PFLU_RS23755	0.87	+2.5
5,324,009	+		PFLU_RS23755	0.87	+0.5
5,324,009	+		PFLU_RS23755	0.87	+0.8
5,324,010	-		PFLU_RS23755	0.87	+2.4
5,324,010	-		PFLU_RS23755	0.87	-0.4
5,324,010	-		PFLU_RS23755	0.87	-0.5
5,324,010	-		PFLU_RS23755	0.87	+2.7
5,324,010	-		PFLU_RS23755	0.87	-1.4
5,324,016	-		PFLU_RS23755	0.88	-1.0
5,324,016	-		PFLU_RS23755	0.88	-1.5
5,324,016	-		PFLU_RS23755	0.88	-1.5
5,324,016	-		PFLU_RS23755	0.88	-1.9
5,324,137	+				-0.8
5,324,137	+				+0.7
5,324,138	-				+0.1
5,324,138	-				-0.9
5,324,153	+				+3.7
5,324,153	+				+2.4
5,324,153	+				+2.5
5,324,153	+				-1.2
5,324,153	+				-0.2
5,324,154	-				-1.4
5,324,154	-				-0.4
5,324,154	-				-0.9