Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS17205

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
3,910,650	+		PFLU_RS17200	0.38	-1.7
3,910,650	+		PFLU_RS17200	0.38	+0.2
3,910,697	-		PFLU_RS17200	0.41	-1.0
3,910,922	+		PFLU_RS17200	0.58	-0.8
3,910,922	+		PFLU_RS17200	0.58	+2.5
3,910,923	-		PFLU_RS17200	0.58	+0.8
3,910,923	-		PFLU_RS17200	0.58	+1.8
3,910,939	+		PFLU_RS17200	0.59	+0.6
3,910,939	+		PFLU_RS17200	0.59	+0.5
3,910,939	+		PFLU_RS17200	0.59	-2.3
3,910,939	+		PFLU_RS17200	0.59	+0.9
3,910,940	-		PFLU_RS17200	0.59	-2.8
3,910,941	+		PFLU_RS17200	0.59	-2.4
3,910,941	+		PFLU_RS17200	0.59	-2.3
3,910,941	+		PFLU_RS17200	0.59	+1.8
3,910,941	+		PFLU_RS17200	0.59	+1.0
3,910,941	+		PFLU_RS17200	0.59	-1.5
3,910,941	+		PFLU_RS17200	0.59	-1.7
3,910,941	+		PFLU_RS17200	0.59	-1.8
3,910,941	+		PFLU_RS17200	0.59	-1.5
3,910,941	+		PFLU_RS17200	0.59	+0.2
3,910,941	+		PFLU_RS17200	0.59	+2.9
3,910,941	+		PFLU_RS17200	0.59	+1.6
3,910,942	-		PFLU_RS17200	0.60	-0.5
3,910,942	-		PFLU_RS17200	0.60	-0.7
3,910,942	-		PFLU_RS17200	0.60	-0.4
3,910,942	-		PFLU_RS17200	0.60	+2.7
3,910,942	-		PFLU_RS17200	0.60	+1.4
3,911,010	+		PFLU_RS17200	0.65	-0.5
3,911,010	+		PFLU_RS17200	0.65	-2.0
3,911,010	+		PFLU_RS17200	0.65	+0.2
3,911,011	-		PFLU_RS17200	0.65	+0.6
3,911,011	-		PFLU_RS17200	0.65	-0.4
3,911,011	-		PFLU_RS17200	0.65	-2.8
3,911,011	-		PFLU_RS17200	0.65	+0.6
3,911,011	-		PFLU_RS17200	0.65	+2.5
3,911,021	+		PFLU_RS17200	0.65	+0.7
3,911,021	+		PFLU_RS17200	0.65	+2.1
3,911,021	+		PFLU_RS17200	0.65	+0.6
3,911,022	-		PFLU_RS17200	0.65	+1.7
3,911,022	-		PFLU_RS17200	0.65	-0.5
3,911,022	-		PFLU_RS17200	0.65	-0.1
3,911,187	+		PFLU_RS17200	0.78	-0.4
3,911,188	-		PFLU_RS17200	0.78	-0.8
3,911,472	+				-0.7
3,911,472	+				-0.2
3,911,485	+				-0.4
3,911,485	+				+2.2
3,911,485	+				+4.4
3,911,485	+				-2.8
3,911,486	-				+0.2
3,911,486	-				-2.2
3,911,486	-				-0.8
3,911,489	+				+0.5
3,911,489	+				-1.0
3,911,489	+				+0.4
3,911,489	+				-1.2
3,911,489	+				-2.1
3,911,489	+				-1.5
3,911,489	+				-2.0
3,911,489	+				+0.2
3,911,489	+				-1.5
3,911,489	+				+0.1
3,911,489	+				-0.8
3,911,489	+				+0.8
3,911,489	+				-1.4
3,911,489	+				-1.0
3,911,489	+				-1.5
3,911,489	+				-1.2
3,911,489	+				-1.0
3,911,489	+				-2.0
3,911,490	-				-0.5
3,911,490	-				+0.8
3,911,490	-				-0.8
3,911,490	-				+0.6
3,911,490	-				+2.1
3,911,490	-				+1.9
3,911,490	-				+0.9
3,911,490	-				+0.8
3,911,490	-				+5.1
3,911,490	-				+0.9
3,911,490	-				+0.8
3,911,490	-				-1.2
3,911,490	-				+1.8
3,911,490	-				-0.2
3,911,490	-				-1.4
3,911,490	-				+1.8
3,911,490	-				-2.2
3,911,490	-				-0.5
3,911,596	+				+2.8
3,911,597	-				+1.0
3,911,731	+				+3.1
3,911,740	+				-0.5
3,911,740	+				-0.2
3,911,741	-				+2.1
3,911,957	-		PFLU_RS17205	0.14	-0.5
3,911,957	-		PFLU_RS17205	0.14	-1.2
3,912,052	-		PFLU_RS17205	0.18	+0.8
3,912,106	+		PFLU_RS17205	0.20	+2.1
3,912,106	+		PFLU_RS17205	0.20	+2.6
3,912,107	-		PFLU_RS17205	0.20	+1.8
3,912,107	-		PFLU_RS17205	0.20	+1.8
3,912,107	-		PFLU_RS17205	0.20	-2.7
3,912,110	+		PFLU_RS17205	0.20	+2.5
3,912,238	+		PFLU_RS17205	0.25	+2.4
3,912,238	+		PFLU_RS17205	0.25	-1.9
3,912,238	+		PFLU_RS17205	0.25	+0.9
3,912,238	+		PFLU_RS17205	0.25	-0.5
3,912,239	-		PFLU_RS17205	0.25	-0.1
3,912,239	-		PFLU_RS17205	0.25	-1.0
3,912,239	-		PFLU_RS17205	0.25	+1.6
3,912,239	-		PFLU_RS17205	0.25	+0.2
3,912,239	-		PFLU_RS17205	0.25	+0.3
3,912,239	-		PFLU_RS17205	0.25	+1.2
3,912,239	-		PFLU_RS17205	0.25	-0.5
3,912,255	-		PFLU_RS17205	0.26	-1.7
3,912,275	+		PFLU_RS17205	0.27	-1.7
3,912,275	+		PFLU_RS17205	0.27	-0.8
3,912,276	-		PFLU_RS17205	0.27	+0.9
3,912,276	-		PFLU_RS17205	0.27	+2.7
3,912,276	-		PFLU_RS17205	0.27	+1.8
3,912,284	+		PFLU_RS17205	0.27	+1.5
3,912,285	-		PFLU_RS17205	0.27	-2.5
3,912,370	+		PFLU_RS17205	0.31	-1.4
3,912,370	+		PFLU_RS17205	0.31	-1.7
3,912,370	+		PFLU_RS17205	0.31	-1.0
3,912,371	-		PFLU_RS17205	0.31	-1.2
3,912,371	-		PFLU_RS17205	0.31	+1.2
3,912,371	-		PFLU_RS17205	0.31	+1.7
3,912,556	+		PFLU_RS17205	0.38	+3.2
3,912,556	+		PFLU_RS17205	0.38	-0.6
3,912,556	+		PFLU_RS17205	0.38	-1.2
3,912,556	+		PFLU_RS17205	0.38	-1.1
3,912,556	+		PFLU_RS17205	0.38	+2.0
3,912,556	+		PFLU_RS17205	0.38	-0.2
3,912,556	+		PFLU_RS17205	0.38	+1.0
3,912,556	+		PFLU_RS17205	0.38	-0.8
3,912,556	+		PFLU_RS17205	0.38	-0.2
3,912,556	+		PFLU_RS17205	0.38	+0.7
3,912,557	-		PFLU_RS17205	0.38	-0.2
3,912,557	-		PFLU_RS17205	0.38	-0.3
3,912,557	-		PFLU_RS17205	0.38	-3.4
3,912,557	-		PFLU_RS17205	0.38	+1.9
3,912,557	-		PFLU_RS17205	0.38	+0.5
3,912,557	-		PFLU_RS17205	0.38	+0.8
3,912,557	-		PFLU_RS17205	0.38	-0.2
3,912,557	-		PFLU_RS17205	0.38	-1.4
3,912,557	-		PFLU_RS17205	0.38	-0.0
3,912,754	+		PFLU_RS17205	0.46	+1.8
3,912,754	+		PFLU_RS17205	0.46	-0.8
3,912,754	+		PFLU_RS17205	0.46	-1.5
3,912,755	-		PFLU_RS17205	0.46	-0.9
3,912,755	-		PFLU_RS17205	0.46	+2.7
3,912,755	-		PFLU_RS17205	0.46	-1.8
3,912,755	-		PFLU_RS17205	0.46	+0.6
3,912,755	-		PFLU_RS17205	0.46	-1.9
3,912,838	+		PFLU_RS17205	0.49	-0.5
3,912,838	+		PFLU_RS17205	0.49	+1.0
3,912,838	+		PFLU_RS17205	0.49	+1.2
3,912,838	+		PFLU_RS17205	0.49	+1.4
3,912,838	+		PFLU_RS17205	0.49	-0.5
3,912,838	+		PFLU_RS17205	0.49	-0.5
3,912,838	+		PFLU_RS17205	0.49	-3.7
3,912,838	+		PFLU_RS17205	0.49	+2.1
3,912,839	-		PFLU_RS17205	0.49	+1.0
3,912,839	-		PFLU_RS17205	0.49	+2.1
3,912,839	-		PFLU_RS17205	0.49	-1.9
3,912,839	-		PFLU_RS17205	0.49	+1.4
3,912,839	-		PFLU_RS17205	0.49	+0.2
3,912,839	-		PFLU_RS17205	0.49	-1.0
3,912,888	-		PFLU_RS17205	0.51	-1.4
3,912,925	+		PFLU_RS17205	0.53	-1.2
3,912,925	+		PFLU_RS17205	0.53	-1.8
3,912,925	+		PFLU_RS17205	0.53	+0.8
3,912,936	-		PFLU_RS17205	0.53	-1.5
3,913,094	+		PFLU_RS17205	0.59	-1.5
3,913,094	+		PFLU_RS17205	0.59	-1.9
3,913,276	+		PFLU_RS17205	0.67	+0.1
3,913,276	+		PFLU_RS17205	0.67	-0.2
3,913,276	+		PFLU_RS17205	0.67	+0.8
3,913,276	+		PFLU_RS17205	0.67	-0.7
3,913,276	+		PFLU_RS17205	0.67	+2.8
3,913,438	+		PFLU_RS17205	0.73	+1.7
3,913,438	+		PFLU_RS17205	0.73	-1.0
3,913,438	+		PFLU_RS17205	0.73	-0.5
3,913,438	+		PFLU_RS17205	0.73	-0.2
3,913,439	-		PFLU_RS17205	0.73	-0.5
3,913,441	+		PFLU_RS17205	0.73	+2.1
3,913,441	+		PFLU_RS17205	0.73	-0.5
3,913,441	+		PFLU_RS17205	0.73	-2.9
3,913,442	-		PFLU_RS17205	0.73	-0.8
3,913,442	-		PFLU_RS17205	0.73	-2.4
3,913,442	-		PFLU_RS17205	0.73	+1.2
3,913,571	-		PFLU_RS17205	0.78	+0.8
3,913,571	-		PFLU_RS17205	0.78	+0.2
3,913,594	+		PFLU_RS17205	0.79	+2.7
3,913,594	+		PFLU_RS17205	0.79	-2.4
3,913,639	+		PFLU_RS17205	0.81	+0.2
3,913,640	-		PFLU_RS17205	0.81	+2.7
3,913,640	-		PFLU_RS17205	0.81	-0.5
3,913,640	-		PFLU_RS17205	0.81	+1.1
3,913,640	-		PFLU_RS17205	0.81	-1.5
3,913,640	-		PFLU_RS17205	0.81	-2.0
3,913,877	+				+2.3
3,913,877	+				-0.1
3,913,877	+				-0.2
3,913,877	+				+1.3
3,913,877	+				+0.0
3,913,878	-				-0.3
3,913,878	-				-1.9
3,913,878	-				+0.2
3,913,878	-				-1.3
3,913,878	-				-0.2
3,913,880	+				-2.2
3,913,880	+				-0.5
3,913,880	+				-0.8
3,913,881	-				-1.5
3,913,881	-				+0.6
3,913,881	-				-1.8
3,914,011	+				+0.8
3,914,107	-				-1.9
3,914,107	-				-0.0
3,914,114	+				-1.2
3,914,114	+				+1.3
3,914,114	+				+3.0
3,914,114	+				-0.8
3,914,115	-				-2.1
3,914,126	+				+0.4
3,914,127	-				-1.0
3,914,146	+				+2.5
3,914,147	-				-1.0
3,914,153	+				+0.2
3,914,153	+				-2.5
3,914,154	-				-1.2
3,914,154	-				-0.0
3,914,154	-				+0.8
3,914,154	-				+2.3
3,914,183	+				+1.8
3,914,278	-				-0.0
3,914,325	+				+0.2
3,914,325	+				-1.0
3,914,326	-				-0.8
3,914,326	-				+0.4
3,914,446	-				-1.5
3,914,488	-		PFLU_RS17210	0.12	-0.7
3,914,631	+		PFLU_RS17210	0.22	+0.5
3,914,631	+		PFLU_RS17210	0.22	+2.9
3,914,631	+		PFLU_RS17210	0.22	-1.5
3,914,631	+		PFLU_RS17210	0.22	-2.1
3,914,631	+		PFLU_RS17210	0.22	-2.4
3,914,631	+		PFLU_RS17210	0.22	+0.8
3,914,632	-		PFLU_RS17210	0.22	+2.4
3,914,632	-		PFLU_RS17210	0.22	+1.5
3,914,632	-		PFLU_RS17210	0.22	-0.3
3,914,649	+		PFLU_RS17210	0.23	+1.4
3,914,650	-		PFLU_RS17210	0.23	-1.4
3,914,650	-		PFLU_RS17210	0.23	+1.6
3,914,655	+		PFLU_RS17210	0.23	+0.4
3,914,655	+		PFLU_RS17210	0.23	-1.4
3,914,797	+		PFLU_RS17210	0.33	-0.2
3,914,798	-		PFLU_RS17210	0.33	-1.4
3,914,809	+		PFLU_RS17210	0.34	+2.5
3,914,809	+		PFLU_RS17210	0.34	+0.7
3,914,910	+		PFLU_RS17210	0.41	-1.2
3,914,937	+		PFLU_RS17210	0.43	-1.4
3,914,937	+		PFLU_RS17210	0.43	+0.2
3,914,937	+		PFLU_RS17210	0.43	+1.5
3,914,937	+		PFLU_RS17210	0.43	-2.0
3,914,937	+		PFLU_RS17210	0.43	-2.4
3,914,938	-		PFLU_RS17210	0.43	+2.2
3,914,973	+		PFLU_RS17210	0.45	+2.3
3,914,974	-		PFLU_RS17210	0.45	-2.7
3,915,040	+		PFLU_RS17210	0.50	+0.2
3,915,040	+		PFLU_RS17210	0.50	-1.5
3,915,040	+		PFLU_RS17210	0.50	-2.2
3,915,041	-		PFLU_RS17210	0.50	-0.5
3,915,041	-		PFLU_RS17210	0.50	+2.8
3,915,094	+		PFLU_RS17210	0.54	-0.2
3,915,094	+		PFLU_RS17210	0.54	-0.2
3,915,094	+		PFLU_RS17210	0.54	+2.4
3,915,094	+		PFLU_RS17210	0.54	-0.2
3,915,095	-		PFLU_RS17210	0.54	-1.8
3,915,095	-		PFLU_RS17210	0.54	-0.4
3,915,095	-		PFLU_RS17210	0.54	-0.8
3,915,095	-		PFLU_RS17210	0.54	-1.9