Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14865

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
3,325,308	+		PFLU_RS14855	0.76	-0.6
3,325,308	+		PFLU_RS14855	0.76	+0.4
3,325,308	+		PFLU_RS14855	0.76	+1.0
3,325,308	+		PFLU_RS14855	0.76	+2.3
3,325,309	-		PFLU_RS14855	0.76	-2.3
3,325,309	-		PFLU_RS14855	0.76	-1.4
3,325,309	-		PFLU_RS14855	0.76	-0.9
3,325,309	-		PFLU_RS14855	0.76	+1.7
3,325,309	-		PFLU_RS14855	0.76	+1.9
3,325,327	+		PFLU_RS14855	0.77	-2.4
3,325,430	-		PFLU_RS14855	0.83	-0.3
3,325,495	+		PFLU_RS14855	0.87	-0.4
3,325,516	+		PFLU_RS14855	0.89	-1.1
3,325,516	+		PFLU_RS14855	0.89	-0.3
3,325,517	-		PFLU_RS14855	0.89	-2.7
3,325,517	-		PFLU_RS14855	0.89	-0.6
3,325,603	+				-2.1
3,325,660	+				-1.1
3,325,660	+				+1.4
3,325,660	+				+2.9
3,325,660	+				+0.3
3,325,661	-				-0.4
3,325,694	+				+1.7
3,325,729	-				-0.6
3,325,780	+				-1.9
3,325,780	+				-0.9
3,325,780	+				+0.7
3,325,780	+				+2.6
3,325,781	-				+0.3
3,325,781	-				+0.1
3,325,781	-				-0.9
3,325,781	-				-1.1
3,325,781	-				-0.4
3,325,813	+		PFLU_RS14860	0.16	+1.3
3,325,813	+		PFLU_RS14860	0.16	+3.8
3,325,813	+		PFLU_RS14860	0.16	-0.4
3,325,813	+		PFLU_RS14860	0.16	-0.6
3,325,814	-		PFLU_RS14860	0.16	-2.4
3,325,814	-		PFLU_RS14860	0.16	-0.1
3,325,814	-		PFLU_RS14860	0.16	-2.4
3,325,814	-		PFLU_RS14860	0.16	-0.3
3,325,814	-		PFLU_RS14860	0.16	+3.8
3,325,814	-		PFLU_RS14860	0.16	-1.3
3,325,814	-		PFLU_RS14860	0.16	+0.7
3,325,814	-		PFLU_RS14860	0.16	-1.9
3,325,814	-		PFLU_RS14860	0.16	-1.4
3,325,814	-		PFLU_RS14860	0.16	+0.1
3,325,884	+		PFLU_RS14860	0.35	+0.1
3,325,967	+		PFLU_RS14860	0.58	+2.6
3,325,967	+		PFLU_RS14860	0.58	+0.7
3,325,967	+		PFLU_RS14860	0.58	-0.6
3,325,968	-		PFLU_RS14860	0.59	-1.3
3,325,968	-		PFLU_RS14860	0.59	+1.9
3,325,968	-		PFLU_RS14860	0.59	-0.9
3,325,968	-		PFLU_RS14860	0.59	-1.1
3,325,968	-		PFLU_RS14860	0.59	-1.1
3,325,972	+		PFLU_RS14860	0.60	-1.4
3,326,000	+		PFLU_RS14860	0.68	-0.9
3,326,000	+		PFLU_RS14860	0.68	-0.6
3,326,001	-		PFLU_RS14860	0.68	-1.6
3,326,001	-		PFLU_RS14860	0.68	-1.2
3,326,001	-		PFLU_RS14860	0.68	-2.0
3,326,059	+		PFLU_RS14860	0.84	+0.7
3,326,059	+		PFLU_RS14860	0.84	-0.6
3,326,060	-		PFLU_RS14860	0.84	+1.5
3,326,060	-		PFLU_RS14860	0.84	-0.6
3,326,060	-		PFLU_RS14860	0.84	+2.6
3,326,122	+				-1.3
3,326,123	-				+0.1
3,326,143	-				+0.7
3,326,157	-				+0.1
3,326,182	+				+1.0
3,326,182	+				+4.5
3,326,183	-				+0.7
3,326,183	-				+3.2
3,326,183	-				-1.3
3,326,355	+		PFLU_RS14865	0.19	+1.7
3,326,355	+		PFLU_RS14865	0.19	+3.7
3,326,356	-		PFLU_RS14865	0.19	+4.0
3,326,356	-		PFLU_RS14865	0.19	+2.9
3,326,356	-		PFLU_RS14865	0.19	-0.9
3,326,385	+		PFLU_RS14865	0.23	+2.6
3,326,385	+		PFLU_RS14865	0.23	-0.9
3,326,385	+		PFLU_RS14865	0.23	+3.0
3,326,385	+		PFLU_RS14865	0.23	-1.6
3,326,385	+		PFLU_RS14865	0.23	-2.4
3,326,385	+		PFLU_RS14865	0.23	-0.3
3,326,385	+		PFLU_RS14865	0.23	-2.5
3,326,385	+		PFLU_RS14865	0.23	+0.1
3,326,386	-		PFLU_RS14865	0.23	-2.4
3,326,386	-		PFLU_RS14865	0.23	-1.9
3,326,386	-		PFLU_RS14865	0.23	-0.3
3,326,386	-		PFLU_RS14865	0.23	-0.3
3,326,386	-		PFLU_RS14865	0.23	-0.9
3,326,533	+		PFLU_RS14865	0.42	+1.6
3,326,533	+		PFLU_RS14865	0.42	-1.1
3,326,534	-		PFLU_RS14865	0.42	+2.7
3,326,534	-		PFLU_RS14865	0.42	-0.7
3,326,534	-		PFLU_RS14865	0.42	+0.1
3,326,534	-		PFLU_RS14865	0.42	+0.1
3,326,534	-		PFLU_RS14865	0.42	+0.7
3,326,567	-		PFLU_RS14865	0.47	+0.1
3,326,661	+		PFLU_RS14865	0.59	-2.5
3,326,661	+		PFLU_RS14865	0.59	+0.9
3,326,661	+		PFLU_RS14865	0.59	+1.4
3,326,661	+		PFLU_RS14865	0.59	-1.9
3,326,662	-		PFLU_RS14865	0.59	+0.1
3,326,663	+		PFLU_RS14865	0.60	-0.3
3,326,664	-		PFLU_RS14865	0.60	-2.0
3,326,664	-		PFLU_RS14865	0.60	-0.3
3,326,664	-		PFLU_RS14865	0.60	+0.7
3,326,664	-		PFLU_RS14865	0.60	-1.9
3,326,745	+		PFLU_RS14865	0.71	+2.7
3,326,745	+		PFLU_RS14865	0.71	+0.5
3,326,745	+		PFLU_RS14865	0.71	-0.2
3,326,745	+		PFLU_RS14865	0.71	-0.4
3,326,745	+		PFLU_RS14865	0.71	+1.7
3,326,745	+		PFLU_RS14865	0.71	+0.7
3,326,746	-		PFLU_RS14865	0.71	+0.2
3,326,746	-		PFLU_RS14865	0.71	-0.1
3,326,847	+		PFLU_RS14865	0.84	+1.7
3,326,847	+		PFLU_RS14865	0.84	-1.9
3,326,848	-		PFLU_RS14865	0.84	+2.6
3,326,848	-		PFLU_RS14865	0.84	+0.5
3,326,972	+				+0.8
3,326,973	-				+3.0
3,326,973	-				-0.3
3,326,973	-				+2.6
3,327,015	+				-0.9
3,327,015	+				-1.6
3,327,016	-				-2.2
3,327,016	-				+2.6
3,327,016	-				-0.5
3,327,016	-				-1.6
3,327,019	+				-0.6
3,327,020	-				+3.3
3,327,061	-				+1.1
3,327,068	+				-0.3
3,327,099	+				+0.3
3,327,099	+				+4.3
3,327,099	+				+0.7
3,327,099	+				-0.9
3,327,099	+				+3.2
3,327,100	-				+0.7
3,327,156	+				+0.1
3,327,157	-				-1.7
3,327,291	-				-1.7
3,327,398	+				-1.1
3,327,415	+				+2.0
3,327,415	+				+2.4
3,327,432	+				+0.9
3,327,432	+				+0.7
3,327,432	+				+0.7
3,327,432	+				+0.7
3,327,432	+				+0.7
3,327,433	-				-1.6
3,327,433	-				-0.6
3,327,545	+				+0.0
3,327,545	+				+0.7
3,327,546	-				+1.7
3,327,546	-				+3.0
3,327,568	+				-0.4
3,327,584	+				+0.7
3,327,662	-				-0.6
3,327,807	+				+0.7
3,327,844	+				+1.7
3,327,916	+				-0.9
3,327,916	+				-0.6
3,327,916	+				+0.4
3,327,917	-				-1.1
3,327,917	-				+2.1
3,327,917	-				-1.2
3,327,925	-				-0.9
3,327,925	-				-0.9
3,327,936	+				-0.6
3,327,936	+				+4.2
3,327,937	-				+2.9
3,327,937	-				-1.1