Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14110

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
3,158,533	+		PFLU_RS14100	0.87	-2.3
3,158,534	-		PFLU_RS14100	0.87	+0.1
3,158,534	-		PFLU_RS14100	0.87	+2.1
3,158,534	-		PFLU_RS14100	0.87	+3.3
3,158,577	+		PFLU_RS14100	0.88	-0.3
3,158,577	+		PFLU_RS14100	0.88	+0.1
3,158,577	+		PFLU_RS14100	0.88	-0.9
3,158,577	+		PFLU_RS14100	0.88	-1.6
3,158,578	-		PFLU_RS14100	0.88	+2.7
3,158,578	-		PFLU_RS14100	0.88	+2.2
3,158,578	-		PFLU_RS14100	0.88	-0.5
3,158,578	-		PFLU_RS14100	0.88	-1.5
3,158,841	+				+0.1
3,158,841	+				+2.6
3,158,841	+				+1.7
3,158,841	+				+2.5
3,158,841	+				-2.3
3,158,841	+				+0.5
3,158,841	+				-0.3
3,158,841	+				+2.2
3,158,841	+				-1.6
3,158,842	-				-0.9
3,158,842	-				-1.1
3,158,842	-				+0.1
3,158,842	-				-1.1
3,158,842	-				-1.5
3,158,842	-				-0.0
3,158,842	-				-0.6
3,158,842	-				+3.1
3,158,842	-				-1.9
3,158,842	-				-0.9
3,158,952	+				-0.6
3,158,969	+				-1.7
3,158,969	+				+2.5
3,158,969	+				-2.4
3,158,969	+				-0.3
3,158,969	+				-0.6
3,158,970	-				+0.7
3,158,970	-				+0.1
3,159,018	+				-1.3
3,159,077	+		PFLU_RS14105	0.23	-1.3
3,159,125	-		PFLU_RS14105	0.37	-0.3
3,159,215	+		PFLU_RS14105	0.63	-0.3
3,159,215	+		PFLU_RS14105	0.63	+0.4
3,159,215	+		PFLU_RS14105	0.63	+0.7
3,159,216	-		PFLU_RS14105	0.63	-1.1
3,159,216	-		PFLU_RS14105	0.63	-0.6
3,159,242	+		PFLU_RS14105	0.70	-0.6
3,159,242	+		PFLU_RS14105	0.70	-2.1
3,159,242	+		PFLU_RS14105	0.70	-0.6
3,159,243	-		PFLU_RS14105	0.71	-0.0
3,159,261	+		PFLU_RS14105	0.76	+1.2
3,159,261	+		PFLU_RS14105	0.76	-0.3
3,159,261	+		PFLU_RS14105	0.76	-1.5
3,159,261	+		PFLU_RS14105	0.76	+0.4
3,159,261	+		PFLU_RS14105	0.76	+0.7
3,159,262	-		PFLU_RS14105	0.76	-1.5
3,159,262	-		PFLU_RS14105	0.76	-0.9
3,159,262	-		PFLU_RS14105	0.76	+2.4
3,159,321	+				-0.6
3,159,322	-				-1.9
3,159,337	+				+1.0
3,159,338	-				+0.1
3,159,338	-				-1.6
3,159,341	+				+0.7
3,159,341	+				+1.7
3,159,341	+				+0.7
3,159,342	-				-0.9
3,159,342	-				+2.0
3,159,342	-				-0.6
3,159,342	-				+0.7
3,159,342	-				+1.4
3,159,342	-				-2.2
3,159,342	-				+1.1
3,159,342	-				-0.9
3,159,342	-				-0.6
3,159,364	+				+2.1
3,159,364	+				+2.9
3,159,365	-				-0.5
3,159,374	-				-0.3
3,159,386	-				-0.9
3,159,406	+				+1.1
3,159,434	+		PFLU_RS14110	0.14	+3.0
3,159,435	-		PFLU_RS14110	0.14	-1.1
3,159,470	-		PFLU_RS14110	0.20	+1.7
3,159,524	+		PFLU_RS14110	0.29	+1.9
3,159,525	-		PFLU_RS14110	0.29	-1.8
3,159,525	-		PFLU_RS14110	0.29	+0.7
3,159,525	-		PFLU_RS14110	0.29	-1.9
3,159,593	+		PFLU_RS14110	0.40	+0.1
3,159,640	+		PFLU_RS14110	0.47	-1.5
3,159,641	-		PFLU_RS14110	0.47	+2.4
3,159,641	-		PFLU_RS14110	0.47	-0.6
3,159,641	-		PFLU_RS14110	0.47	-0.9
3,159,670	-		PFLU_RS14110	0.52	+0.1
3,159,725	+		PFLU_RS14110	0.60	+1.3
3,159,725	+		PFLU_RS14110	0.60	+0.9
3,159,725	+		PFLU_RS14110	0.60	-0.3
3,159,725	+		PFLU_RS14110	0.60	+1.2
3,159,726	-		PFLU_RS14110	0.61	+1.1
3,159,726	-		PFLU_RS14110	0.61	+1.9
3,159,726	-		PFLU_RS14110	0.61	-1.1
3,159,726	-		PFLU_RS14110	0.61	-1.6
3,159,727	+		PFLU_RS14110	0.61	+2.8
3,159,727	+		PFLU_RS14110	0.61	-0.4
3,159,727	+		PFLU_RS14110	0.61	-0.6
3,159,727	+		PFLU_RS14110	0.61	+0.7
3,159,803	+		PFLU_RS14110	0.73	-0.5
3,159,905	+		PFLU_RS14110	0.89	+3.7
3,159,912	+				-0.5
3,159,912	+				+0.1
3,159,913	-				+1.9
3,159,964	+				-1.1
3,159,965	-				+1.7
3,159,980	+				-0.8
3,159,980	+				+1.9
3,159,980	+				-2.1
3,159,980	+				-0.3
3,159,982	+				+0.8
3,160,109	+		PFLU_RS30795	0.48	-2.1
3,160,110	-		PFLU_RS30795	0.48	-2.4
3,160,110	-		PFLU_RS30795	0.48	-1.3
3,160,123	+		PFLU_RS30795	0.53	-1.0
3,160,123	+		PFLU_RS30795	0.53	+0.7
3,160,124	-		PFLU_RS30795	0.53	-0.6
3,160,161	-		PFLU_RS30795	0.67	+0.7
3,160,190	+		PFLU_RS30795	0.78	+0.1
3,160,214	+		PFLU_RS30795	0.88	-0.4
3,160,214	+		PFLU_RS30795	0.88	+2.6
3,160,214	+		PFLU_RS30795	0.88	+2.3
3,160,214	+		PFLU_RS30795	0.88	+0.5
3,160,214	+		PFLU_RS30795	0.88	+0.1
3,160,214	+		PFLU_RS30795	0.88	-1.8
3,160,214	+		PFLU_RS30795	0.88	-0.9
3,160,215	-		PFLU_RS30795	0.88	+0.1
3,160,215	-		PFLU_RS30795	0.88	-1.3
3,160,215	-		PFLU_RS30795	0.88	+0.7
3,160,215	-		PFLU_RS30795	0.88	+2.9
3,160,249	+				+1.7
3,160,393	+				-0.0
3,160,393	+				-0.6
3,160,393	+				+0.1
3,160,394	-				+0.4
3,160,394	-				-1.1
3,160,394	-				-1.8
3,160,394	-				+0.1
3,160,394	-				+3.5
3,160,394	-				-1.9
3,160,394	-				-1.3
3,160,396	+				-2.6
3,160,396	+				+3.2
3,160,396	+				-1.6
3,160,396	+				-0.6
3,160,396	+				-2.0
3,160,396	+				+2.1
3,160,397	-				-1.8
3,160,397	-				-0.1
3,160,397	-				+3.7
3,160,564	+				-1.5
3,160,565	-				+0.7
3,160,565	-				-0.6
3,160,565	-				-0.3
3,160,565	-				+1.7
3,160,565	-				-0.9
3,160,569	+				+1.8
3,160,601	-				-1.3
3,160,675	+				+0.2
3,160,696	+				-0.3
3,160,696	+				-1.1
3,160,697	-				-1.5
3,160,697	-				+2.2
3,160,697	-				-1.8
3,160,697	-				-1.6
3,160,722	+				-1.2
3,160,743	+				+0.1
3,160,756	+				+1.7
3,160,756	+				-1.6
3,160,757	-				-0.3
3,160,757	-				-2.2
3,160,757	-				-1.5
3,160,757	-				+1.2
3,160,757	-				-1.6
3,160,757	-				-1.8
3,160,757	-				+0.1
3,160,789	+				-0.9
3,160,837	-				-1.1
3,160,840	+				-0.9
3,160,840	+				-0.6
3,160,841	-				+1.7
3,160,841	-				+1.7
3,160,841	-				-0.6
3,160,844	-				-0.9
3,160,848	+				-1.5
3,160,849	-				-0.6
3,160,849	-				+2.0
3,160,849	-				+0.5
3,160,934	+				+0.7
3,160,935	-				+0.0
3,160,969	+				+1.5
3,160,969	+				-0.2
3,160,970	-				+1.0
3,160,970	-				-0.9
3,160,970	-				+0.5
3,160,971	+				-0.3