Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS13240

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
2,993,776	+				-0.3
2,993,777	-				-1.1
2,993,825	+				-0.9
2,993,826	-				-0.2
2,993,826	-				-2.4
2,993,844	-				+2.6
2,993,844	-				+2.6
2,993,844	-				+0.4
2,993,844	-				+4.0
2,994,173	+		PFLU_RS13240	0.28	-1.0
2,994,173	+		PFLU_RS13240	0.28	-2.4
2,994,173	+		PFLU_RS13240	0.28	-2.1
2,994,179	+		PFLU_RS13240	0.29	-2.2
2,994,179	+		PFLU_RS13240	0.29	+0.7
2,994,180	-		PFLU_RS13240	0.29	-1.4
2,994,180	-		PFLU_RS13240	0.29	-0.7
2,994,180	-		PFLU_RS13240	0.29	+1.7
2,994,180	-		PFLU_RS13240	0.29	-0.3
2,994,356	-		PFLU_RS13240	0.47	-0.6
2,994,356	-		PFLU_RS13240	0.47	+0.1
2,994,637	+		PFLU_RS13240	0.76	-0.3
2,994,637	+		PFLU_RS13240	0.76	-0.6
2,994,637	+		PFLU_RS13240	0.76	+0.6
2,994,637	+		PFLU_RS13240	0.76	-0.3
2,994,637	+		PFLU_RS13240	0.76	+0.7
2,994,637	+		PFLU_RS13240	0.76	+0.9
2,994,637	+		PFLU_RS13240	0.76	-2.2
2,994,637	+		PFLU_RS13240	0.76	-1.4
2,994,638	-		PFLU_RS13240	0.76	+2.5
2,994,638	-		PFLU_RS13240	0.76	+1.3
2,994,638	-		PFLU_RS13240	0.76	-1.3
2,994,638	-		PFLU_RS13240	0.76	-3.0
2,994,638	-		PFLU_RS13240	0.76	+2.1
2,994,638	-		PFLU_RS13240	0.76	+2.4
2,994,638	-		PFLU_RS13240	0.76	+0.5
2,994,638	-		PFLU_RS13240	0.76	+1.7
2,994,714	+		PFLU_RS13240	0.83	+1.9
2,994,714	+		PFLU_RS13240	0.83	-1.5
2,994,715	-		PFLU_RS13240	0.84	+0.4
2,994,715	-		PFLU_RS13240	0.84	-1.1
2,994,742	+		PFLU_RS13240	0.86	+1.3
2,994,742	+		PFLU_RS13240	0.86	+1.7
2,994,987	+				+2.7
2,994,987	+				-0.1
2,994,987	+				-2.0
2,994,987	+				+1.7
2,994,988	-				+0.1
2,994,988	-				-0.1
2,995,015	+		PFLU_RS13245	0.11	-1.6
2,995,015	+		PFLU_RS13245	0.11	-0.6
2,995,015	+		PFLU_RS13245	0.11	-0.9
2,995,015	+		PFLU_RS13245	0.11	-0.1
2,995,016	-		PFLU_RS13245	0.11	+1.3
2,995,016	-		PFLU_RS13245	0.11	+0.5
2,995,016	-		PFLU_RS13245	0.11	-1.7
2,995,016	-		PFLU_RS13245	0.11	-1.6
2,995,035	+		PFLU_RS13245	0.13	-1.7
2,995,035	+		PFLU_RS13245	0.13	+1.2
2,995,035	+		PFLU_RS13245	0.13	-0.9
2,995,036	-		PFLU_RS13245	0.13	-0.6
2,995,036	-		PFLU_RS13245	0.13	-2.0
2,995,143	+		PFLU_RS13245	0.21	-2.8
2,995,143	+		PFLU_RS13245	0.21	-1.7
2,995,144	-		PFLU_RS13245	0.21	-1.4
2,995,152	+		PFLU_RS13245	0.22	-0.3
2,995,152	+		PFLU_RS13245	0.22	-1.6
2,995,152	+		PFLU_RS13245	0.22	-1.3
2,995,152	+		PFLU_RS13245	0.22	+1.0
2,995,152	+		PFLU_RS13245	0.22	-2.1
2,995,152	+		PFLU_RS13245	0.22	+0.7
2,995,152	+		PFLU_RS13245	0.22	+0.9
2,995,152	+		PFLU_RS13245	0.22	-0.6
2,995,152	+		PFLU_RS13245	0.22	+0.3
2,995,153	-		PFLU_RS13245	0.22	-0.1
2,995,153	-		PFLU_RS13245	0.22	-1.4
2,995,153	-		PFLU_RS13245	0.22	-0.6
2,995,153	-		PFLU_RS13245	0.22	-0.9
2,995,153	-		PFLU_RS13245	0.22	-0.0
2,995,153	-		PFLU_RS13245	0.22	+2.4
2,995,153	-		PFLU_RS13245	0.22	-0.1
2,995,153	-		PFLU_RS13245	0.22	+1.4
2,995,185	+		PFLU_RS13245	0.24	+0.1
2,995,185	+		PFLU_RS13245	0.24	-1.4
2,995,185	+		PFLU_RS13245	0.24	-1.3
2,995,185	+		PFLU_RS13245	0.24	-2.4
2,995,185	+		PFLU_RS13245	0.24	+0.1
2,995,185	+		PFLU_RS13245	0.24	-1.3
2,995,185	+		PFLU_RS13245	0.24	-1.6
2,995,185	+		PFLU_RS13245	0.24	-1.7
2,995,185	+		PFLU_RS13245	0.24	-1.9
2,995,186	-		PFLU_RS13245	0.24	-1.9
2,995,186	-		PFLU_RS13245	0.24	-1.3
2,995,186	-		PFLU_RS13245	0.24	+1.4
2,995,186	-		PFLU_RS13245	0.24	+2.5
2,995,218	+		PFLU_RS13245	0.27	-1.6
2,995,227	+		PFLU_RS13245	0.27	-0.9
2,995,227	+		PFLU_RS13245	0.27	+1.5
2,995,227	+		PFLU_RS13245	0.27	+2.3
2,995,227	+		PFLU_RS13245	0.27	+0.3
2,995,227	+		PFLU_RS13245	0.27	-0.3
2,995,227	+		PFLU_RS13245	0.27	-2.0
2,995,227	+		PFLU_RS13245	0.27	-0.0
2,995,227	+		PFLU_RS13245	0.27	-0.3
2,995,227	+		PFLU_RS13245	0.27	+0.7
2,995,228	-		PFLU_RS13245	0.28	-0.2
2,995,228	-		PFLU_RS13245	0.28	-0.9
2,995,228	-		PFLU_RS13245	0.28	+2.4
2,995,228	-		PFLU_RS13245	0.28	-1.9
2,995,228	-		PFLU_RS13245	0.28	+0.1
2,995,228	-		PFLU_RS13245	0.28	-0.0
2,995,228	-		PFLU_RS13245	0.28	+0.2
2,995,228	-		PFLU_RS13245	0.28	-1.6
2,995,228	-		PFLU_RS13245	0.28	-1.6
2,995,228	-		PFLU_RS13245	0.28	-2.0
2,995,228	-		PFLU_RS13245	0.28	-1.3
2,995,228	-		PFLU_RS13245	0.28	+1.7
2,995,228	-		PFLU_RS13245	0.28	+1.6
2,995,228	-		PFLU_RS13245	0.28	-1.9
2,995,228	-		PFLU_RS13245	0.28	+0.1
2,995,228	-		PFLU_RS13245	0.28	-0.9
2,995,335	+		PFLU_RS13245	0.36	-2.1
2,995,335	+		PFLU_RS13245	0.36	-2.0
2,995,423	-		PFLU_RS13245	0.43	+1.1
2,995,423	-		PFLU_RS13245	0.43	+1.1
2,995,423	-		PFLU_RS13245	0.43	+0.6
2,995,423	-		PFLU_RS13245	0.43	+3.1
2,995,423	-		PFLU_RS13245	0.43	+0.9
2,995,494	+		PFLU_RS13245	0.48	-1.6
2,995,494	+		PFLU_RS13245	0.48	+0.1
2,995,494	+		PFLU_RS13245	0.48	-0.9
2,995,495	-		PFLU_RS13245	0.48	-1.4
2,995,495	-		PFLU_RS13245	0.48	+0.1
2,995,495	-		PFLU_RS13245	0.48	-1.1
2,995,615	+		PFLU_RS13245	0.57	+0.1
2,995,744	+		PFLU_RS13245	0.67	-0.9
2,995,744	+		PFLU_RS13245	0.67	-0.6
2,995,744	+		PFLU_RS13245	0.67	+1.7
2,995,745	-		PFLU_RS13245	0.68	+0.7
2,995,745	-		PFLU_RS13245	0.68	+2.3
2,995,788	+		PFLU_RS13245	0.71	-0.3
2,995,788	+		PFLU_RS13245	0.71	-0.0
2,995,789	-		PFLU_RS13245	0.71	-0.3
2,995,789	-		PFLU_RS13245	0.71	+0.7
2,995,789	-		PFLU_RS13245	0.71	-1.1
2,995,789	-		PFLU_RS13245	0.71	+2.2
2,995,857	+		PFLU_RS13245	0.76	+0.1
2,995,858	-		PFLU_RS13245	0.76	-0.3
2,995,858	-		PFLU_RS13245	0.76	-0.3
2,995,858	-		PFLU_RS13245	0.76	-1.9
2,995,858	-		PFLU_RS13245	0.76	-1.1
2,995,858	-		PFLU_RS13245	0.76	-2.7
2,995,858	-		PFLU_RS13245	0.76	-0.6
2,995,858	-		PFLU_RS13245	0.76	-0.3
2,995,858	-		PFLU_RS13245	0.76	-2.0
2,995,858	-		PFLU_RS13245	0.76	-0.6
2,995,858	-		PFLU_RS13245	0.76	-0.3