Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS11085

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
2,444,956	-		PFLU_RS11075	0.66	+0.2
2,444,956	-		PFLU_RS11075	0.66	-0.1
2,445,018	-		PFLU_RS11075	0.77	+3.1
2,445,018	-		PFLU_RS11075	0.77	-2.1
2,445,018	-		PFLU_RS11075	0.77	-1.8
2,445,029	+		PFLU_RS11075	0.78	+2.6
2,445,030	-		PFLU_RS11075	0.79	-1.2
2,445,050	+		PFLU_RS11075	0.82	+0.2
2,445,051	-		PFLU_RS11075	0.82	+2.8
2,445,051	-		PFLU_RS11075	0.82	+1.4
2,445,051	-		PFLU_RS11075	0.82	+3.1
2,445,052	+		PFLU_RS11075	0.83	+0.0
2,445,052	+		PFLU_RS11075	0.83	-0.6
2,445,052	+		PFLU_RS11075	0.83	+2.5
2,445,052	+		PFLU_RS11075	0.83	+0.4
2,445,052	+		PFLU_RS11075	0.83	-0.1
2,445,052	+		PFLU_RS11075	0.83	+0.6
2,445,052	+		PFLU_RS11075	0.83	+2.6
2,445,052	+		PFLU_RS11075	0.83	+1.9
2,445,052	+		PFLU_RS11075	0.83	-1.1
2,445,053	-		PFLU_RS11075	0.83	-2.9
2,445,053	-		PFLU_RS11075	0.83	-0.1
2,445,053	-		PFLU_RS11075	0.83	-1.9
2,445,053	-		PFLU_RS11075	0.83	+2.9
2,445,053	-		PFLU_RS11075	0.83	+2.4
2,445,087	+		PFLU_RS11075	0.89	-1.1
2,445,089	+		PFLU_RS11075	0.89	-1.5
2,445,089	+		PFLU_RS11075	0.89	-1.1
2,445,089	+		PFLU_RS11075	0.89	+0.9
2,445,089	+		PFLU_RS11075	0.89	-2.0
2,445,089	+		PFLU_RS11075	0.89	-0.6
2,445,089	+		PFLU_RS11075	0.89	-0.6
2,445,089	+		PFLU_RS11075	0.89	-1.2
2,445,089	+		PFLU_RS11075	0.89	-2.8
2,445,089	+		PFLU_RS11075	0.89	+4.3
2,445,089	+		PFLU_RS11075	0.89	-0.1
2,445,089	+		PFLU_RS11075	0.89	-2.1
2,445,089	+		PFLU_RS11075	0.89	+2.1
2,445,089	+		PFLU_RS11075	0.89	+2.2
2,445,089	+		PFLU_RS11075	0.89	-2.0
2,445,089	+		PFLU_RS11075	0.89	+0.1
2,445,089	+		PFLU_RS11075	0.89	+2.9
2,445,090	-		PFLU_RS11075	0.89	-1.1
2,445,090	-		PFLU_RS11075	0.89	+0.5
2,445,090	-		PFLU_RS11075	0.89	-1.2
2,445,090	-		PFLU_RS11075	0.89	-3.5
2,445,090	-		PFLU_RS11075	0.89	+1.4
2,445,090	-		PFLU_RS11075	0.89	-0.6
2,445,090	-		PFLU_RS11075	0.89	+3.7
2,445,090	-		PFLU_RS11075	0.89	-1.1
2,445,090	-		PFLU_RS11075	0.89	+2.4
2,445,090	-		PFLU_RS11075	0.89	+2.5
2,445,090	-		PFLU_RS11075	0.89	-0.4
2,445,148	+				+0.4
2,445,148	+				-2.1
2,445,148	+				-2.1
2,445,148	+				+0.8
2,445,149	-				+0.9
2,445,149	-				+6.7
2,445,168	+				-0.9
2,445,169	-				+1.5
2,445,169	-				+0.6
2,445,169	-				+1.2
2,445,169	-				+2.1
2,445,201	-				+0.9
2,445,239	+		PFLU_RS11080	0.11	+0.3
2,445,239	+		PFLU_RS11080	0.11	-0.9
2,445,239	+		PFLU_RS11080	0.11	-1.1
2,445,240	-		PFLU_RS11080	0.11	+3.1
2,445,240	-		PFLU_RS11080	0.11	+1.2
2,445,240	-		PFLU_RS11080	0.11	-0.9
2,445,323	+		PFLU_RS11080	0.23	+0.3
2,445,324	-		PFLU_RS11080	0.23	-2.0
2,445,324	-		PFLU_RS11080	0.23	+1.2
2,445,324	-		PFLU_RS11080	0.23	-1.5
2,445,324	-		PFLU_RS11080	0.23	-1.4
2,445,324	-		PFLU_RS11080	0.23	-2.1
2,445,324	-		PFLU_RS11080	0.23	+1.9
2,445,324	-		PFLU_RS11080	0.23	+2.2
2,445,407	-		PFLU_RS11080	0.36	+0.9
2,445,407	-		PFLU_RS11080	0.36	+0.2
2,445,467	+		PFLU_RS11080	0.45	+4.2
2,445,467	+		PFLU_RS11080	0.45	+1.5
2,445,468	-		PFLU_RS11080	0.45	+2.7
2,445,535	+		PFLU_RS11080	0.55	-1.1
2,445,536	-		PFLU_RS11080	0.55	+0.8
2,445,564	+		PFLU_RS11080	0.59	+1.9
2,445,564	+		PFLU_RS11080	0.59	+0.3
2,445,564	+		PFLU_RS11080	0.59	-1.7
2,445,564	+		PFLU_RS11080	0.59	+3.7
2,445,564	+		PFLU_RS11080	0.59	-2.7
2,445,564	+		PFLU_RS11080	0.59	+1.8
2,445,565	-		PFLU_RS11080	0.59	+0.5
2,445,565	-		PFLU_RS11080	0.59	+2.5
2,445,565	-		PFLU_RS11080	0.59	-1.2
2,445,565	-		PFLU_RS11080	0.59	-1.5
2,445,565	-		PFLU_RS11080	0.59	+2.5
2,445,565	-		PFLU_RS11080	0.59	+2.5
2,445,565	-		PFLU_RS11080	0.59	-0.4
2,445,565	-		PFLU_RS11080	0.59	+2.3
2,445,565	-		PFLU_RS11080	0.59	-1.2
2,445,565	-		PFLU_RS11080	0.59	-0.1
2,445,565	-		PFLU_RS11080	0.59	-0.8
2,445,565	-		PFLU_RS11080	0.59	-0.2
2,445,565	-		PFLU_RS11080	0.59	+0.9
2,445,565	-		PFLU_RS11080	0.59	-0.1
2,445,585	-		PFLU_RS11080	0.62	+1.2
2,445,585	-		PFLU_RS11080	0.62	-0.7
2,445,585	-		PFLU_RS11080	0.62	+2.1
2,445,585	-		PFLU_RS11080	0.62	+1.3
2,445,585	-		PFLU_RS11080	0.62	+2.3
2,445,585	-		PFLU_RS11080	0.62	+2.3
2,445,585	-		PFLU_RS11080	0.62	+1.3
2,445,585	-		PFLU_RS11080	0.62	+1.6
2,445,585	-		PFLU_RS11080	0.62	-0.7
2,445,585	-		PFLU_RS11080	0.62	+0.3
2,445,585	-		PFLU_RS11080	0.62	+0.2
2,445,593	+		PFLU_RS11080	0.63	-1.9
2,445,594	-		PFLU_RS11080	0.64	-1.8
2,445,594	-		PFLU_RS11080	0.64	+0.9
2,445,649	+		PFLU_RS11080	0.72	+0.8
2,445,671	+		PFLU_RS11080	0.75	-1.4
2,445,671	+		PFLU_RS11080	0.75	-0.1
2,445,671	+		PFLU_RS11080	0.75	-0.1
2,445,672	-		PFLU_RS11080	0.75	-1.4
2,445,766	+		PFLU_RS11080	0.89	-1.4
2,445,794	+				+0.5
2,445,794	+				-0.1
2,445,812	+				+2.8
2,445,812	+				+2.4
2,445,812	+				+0.9
2,445,813	-				+0.6
2,445,813	-				-1.1
2,445,813	-				+0.6
2,445,813	-				+1.6
2,445,813	-				+0.7
2,445,828	-				+1.1
2,445,828	-				-1.5
2,445,828	-				-1.6
2,445,897	-				-2.4
2,445,897	-				+0.6
2,445,897	-				+2.2
2,445,905	+				-1.4
2,445,905	+				-1.8
2,445,905	+				+0.3
2,445,905	+				+3.2
2,445,905	+				+1.5
2,445,905	+				+1.3
2,445,905	+				+0.3
2,445,905	+				+3.5
2,445,905	+				+1.7
2,445,905	+				-1.5
2,445,905	+				+2.9
2,445,905	+				-2.1
2,445,905	+				-1.4
2,445,905	+				-0.1
2,445,905	+				-0.3
2,445,905	+				-1.1
2,445,906	-				-0.5
2,445,906	-				+1.5
2,445,906	-				-0.9
2,445,906	-				+1.1
2,445,906	-				-0.9
2,445,906	-				+0.9
2,445,906	-				+0.5
2,445,906	-				-1.0
2,445,906	-				-0.1
2,445,906	-				-0.7
2,445,906	-				-1.2
2,445,906	-				+0.3
2,445,906	-				-1.1
2,445,906	-				-1.5
2,445,906	-				-1.1
2,445,906	-				-0.9
2,445,906	-				-2.2
2,445,906	-				-0.1
2,445,906	-				-1.7
2,445,906	-				-0.1
2,445,909	+				+0.3
2,445,909	+				-2.5
2,445,909	+				+2.9
2,445,909	+				+0.3
2,445,909	+				-0.9
2,445,909	+				+2.8
2,445,909	+				+0.4
2,445,909	+				-1.6
2,445,909	+				-2.0
2,445,909	+				-2.2
2,445,909	+				-1.0
2,445,910	-				-0.2
2,445,910	-				-1.2
2,445,910	-				-0.9
2,445,910	-				-0.1
2,445,910	-				-2.2
2,445,910	-				-0.4
2,445,910	-				-3.2
2,445,910	-				+1.0
2,445,910	-				-2.2
2,445,910	-				-2.0
2,445,910	-				-1.2
2,445,910	-				+0.2
2,445,910	-				+2.6
2,445,910	-				-2.2
2,445,910	-				-0.8
2,445,910	-				+2.9
2,445,910	-				-0.9
2,445,910	-				-0.2
2,445,969	+		PFLU_RS11085	0.10	-0.4
2,445,969	+		PFLU_RS11085	0.10	+1.6
2,445,969	+		PFLU_RS11085	0.10	+0.7
2,445,969	+		PFLU_RS11085	0.10	+2.3
2,445,969	+		PFLU_RS11085	0.10	+0.8
2,445,970	-		PFLU_RS11085	0.10	-1.5
2,445,970	-		PFLU_RS11085	0.10	+1.2
2,445,970	-		PFLU_RS11085	0.10	-1.0
2,446,013	+		PFLU_RS11085	0.21	+0.9
2,446,013	+		PFLU_RS11085	0.21	-0.8
2,446,013	+		PFLU_RS11085	0.21	+1.5
2,446,013	+		PFLU_RS11085	0.21	+0.9
2,446,014	-		PFLU_RS11085	0.21	-1.2
2,446,014	-		PFLU_RS11085	0.21	+1.4
2,446,014	-		PFLU_RS11085	0.21	-0.4
2,446,014	-		PFLU_RS11085	0.21	+0.7
2,446,014	-		PFLU_RS11085	0.21	+0.9
2,446,162	+		PFLU_RS11085	0.58	+1.9
2,446,162	+		PFLU_RS11085	0.58	-0.1
2,446,162	+		PFLU_RS11085	0.58	-0.3
2,446,163	-		PFLU_RS11085	0.59	-1.1
2,446,177	+		PFLU_RS11085	0.62	+0.9
2,446,177	+		PFLU_RS11085	0.62	+0.7
2,446,177	+		PFLU_RS11085	0.62	-0.3
2,446,177	+		PFLU_RS11085	0.62	+0.9
2,446,177	+		PFLU_RS11085	0.62	-1.7
2,446,177	+		PFLU_RS11085	0.62	+1.4
2,446,177	+		PFLU_RS11085	0.62	+3.1
2,446,177	+		PFLU_RS11085	0.62	-0.7
2,446,177	+		PFLU_RS11085	0.62	-0.8
2,446,177	+		PFLU_RS11085	0.62	-2.2
2,446,178	-		PFLU_RS11085	0.62	-0.9
2,446,178	-		PFLU_RS11085	0.62	-1.2
2,446,178	-		PFLU_RS11085	0.62	+0.6
2,446,178	-		PFLU_RS11085	0.62	+1.8
2,446,178	-		PFLU_RS11085	0.62	-1.4
2,446,178	-		PFLU_RS11085	0.62	-1.4
2,446,178	-		PFLU_RS11085	0.62	-0.9
2,446,178	-		PFLU_RS11085	0.62	-0.1
2,446,178	-		PFLU_RS11085	0.62	-0.6
2,446,178	-		PFLU_RS11085	0.62	+0.9
2,446,178	-		PFLU_RS11085	0.62	-0.4
2,446,178	-		PFLU_RS11085	0.62	+0.8
2,446,178	-		PFLU_RS11085	0.62	+0.3
2,446,178	-		PFLU_RS11085	0.62	+2.5
2,446,178	-		PFLU_RS11085	0.62	-1.5
2,446,181	+		PFLU_RS11085	0.63	+0.3
2,446,181	+		PFLU_RS11085	0.63	+0.2
2,446,181	+		PFLU_RS11085	0.63	+0.8
2,446,181	+		PFLU_RS11085	0.63	+3.1
2,446,181	+		PFLU_RS11085	0.63	-0.2
2,446,181	+		PFLU_RS11085	0.63	+1.9
2,446,181	+		PFLU_RS11085	0.63	-1.5
2,446,181	+		PFLU_RS11085	0.63	+0.3
2,446,181	+		PFLU_RS11085	0.63	-0.4
2,446,181	+		PFLU_RS11085	0.63	+1.9
2,446,182	-		PFLU_RS11085	0.63	+1.9
2,446,182	-		PFLU_RS11085	0.63	-2.0
2,446,182	-		PFLU_RS11085	0.63	-1.1
2,446,182	-		PFLU_RS11085	0.63	+0.2
2,446,182	-		PFLU_RS11085	0.63	+0.7
2,446,182	-		PFLU_RS11085	0.63	+0.9
2,446,182	-		PFLU_RS11085	0.63	+1.6
2,446,182	-		PFLU_RS11085	0.63	+0.4
2,446,182	-		PFLU_RS11085	0.63	+3.1
2,446,282	+		PFLU_RS11085	0.88	-2.8
2,446,283	-		PFLU_RS11085	0.89	-0.5
2,446,308	-				-1.4
2,446,308	-				-1.7
2,446,308	-				-2.3
2,446,315	+				-0.1
2,446,316	-				-1.1
2,446,316	-				+1.0
2,446,316	-				+3.5
2,446,316	-				+2.6
2,446,326	-				+0.1
2,446,334	+				-2.3
2,446,356	-				-0.1
2,446,508	+		PFLU_RS11090	0.21	+1.9
2,446,649	+		PFLU_RS11090	0.40	+2.2
2,446,649	+		PFLU_RS11090	0.40	+1.8
2,446,649	+		PFLU_RS11090	0.40	-0.9
2,446,649	+		PFLU_RS11090	0.40	+1.6
2,446,650	-		PFLU_RS11090	0.40	+1.4
2,446,650	-		PFLU_RS11090	0.40	-0.2
2,446,650	-		PFLU_RS11090	0.40	+2.9
2,446,650	-		PFLU_RS11090	0.40	+0.9
2,446,650	-		PFLU_RS11090	0.40	-1.4
2,446,650	-		PFLU_RS11090	0.40	-0.3
2,446,663	-		PFLU_RS11090	0.41	+3.1
2,446,682	+		PFLU_RS11090	0.44	-0.4
2,446,683	-		PFLU_RS11090	0.44	+5.7
2,446,700	+		PFLU_RS11090	0.46	-0.5
2,446,701	-		PFLU_RS11090	0.46	+0.9
2,446,807	+		PFLU_RS11090	0.60	-0.9
2,446,808	-		PFLU_RS11090	0.60	+1.0
2,446,808	-		PFLU_RS11090	0.60	+0.1
2,446,821	+		PFLU_RS11090	0.62	-1.1
2,446,821	+		PFLU_RS11090	0.62	-0.9
2,446,821	+		PFLU_RS11090	0.62	-0.7
2,447,016	+		PFLU_RS11090	0.88	+0.3
2,447,016	+		PFLU_RS11090	0.88	-0.9
2,447,016	+		PFLU_RS11090	0.88	-0.4
2,447,017	-		PFLU_RS11090	0.88	-1.3
2,447,017	-		PFLU_RS11090	0.88	-1.5
2,447,038	+				+0.6
2,447,038	+				+1.9
2,447,038	+				-1.1
2,447,038	+				+1.3
2,447,038	+				-2.5
2,447,038	+				+0.6
2,447,039	-				-0.3
2,447,039	-				-1.2
2,447,039	-				-0.4
2,447,039	-				-0.1
2,447,039	-				+2.5
2,447,045	+				-2.6
2,447,072	+				-1.2
2,447,073	-				+1.9
2,447,073	-				-1.5
2,447,073	-				-1.1
2,447,073	-				+0.8
2,447,073	-				-0.7
2,447,073	-				+1.5
2,447,106	+				+0.8
2,447,149	-				+1.4
2,447,160	+				-1.4
2,447,161	-				+0.9
2,447,182	+				-0.2
2,447,182	+				-1.9
2,447,182	+				+1.3
2,447,182	+				-1.5
2,447,182	+				-0.7
2,447,182	+				+1.9
2,447,182	+				-0.7
2,447,183	-				-1.1
2,447,183	-				+0.3
2,447,183	-				-1.9
2,447,183	-				-0.4
2,447,183	-				-3.0
2,447,216	-				-1.2
2,447,263	+				+1.6
2,447,263	+				-0.9
2,447,263	+				-1.0
2,447,263	+				+0.3
2,447,263	+				-0.1
2,447,264	-				-2.6
2,447,264	-				-0.5
2,447,264	-				+0.6
2,447,264	-				-0.9
2,447,264	-				-0.9
2,447,280	+				+1.5
2,447,280	+				-0.7
2,447,280	+				-2.1
2,447,280	+				-0.3
2,447,281	-				-1.1
2,447,285	+				+3.9
2,447,285	+				-0.1
2,447,285	+				-0.4
2,447,285	+				-0.4
2,447,285	+				-0.5
2,447,285	+				-1.2
2,447,286	-				+0.3
2,447,286	-				+2.1
2,447,286	-				-0.1
2,447,286	-				-0.7
2,447,312	-				+0.4
2,447,312	-				+0.4
2,447,312	-				-2.8
2,447,312	-				-1.4