Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07475

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
1,663,043	+		PFLU_RS07465	0.52	-0.3
1,663,044	-		PFLU_RS07465	0.52	+0.5
1,663,052	+		PFLU_RS07465	0.53	-1.7
1,663,052	+		PFLU_RS07465	0.53	-1.3
1,663,052	+		PFLU_RS07465	0.53	-1.4
1,663,053	-		PFLU_RS07465	0.53	-0.5
1,663,053	-		PFLU_RS07465	0.53	-1.6
1,663,493	+				-0.7
1,663,493	+				-0.4
1,663,494	-				-1.7
1,663,494	-				+0.5
1,663,494	-				-0.3
1,663,495	+				+0.6
1,663,495	+				-2.0
1,663,495	+				-0.7
1,663,496	-				+1.9
1,663,496	-				-1.5
1,663,496	-				+2.0
1,663,496	-				-1.8
1,663,496	-				-0.5
1,663,496	-				-0.9
1,663,496	-				-0.7
1,663,496	-				+0.5
1,663,496	-				-2.1
1,663,496	-				-0.9
1,663,590	+				-2.3
1,663,591	-				-2.4
1,663,591	-				+0.3
1,663,591	-				+0.3
1,663,591	-				+2.8
1,663,591	-				-1.9
1,663,591	-				+0.4
1,663,591	-				+1.7
1,663,591	-				-0.0
1,663,603	+				-0.7
1,663,603	+				+0.5
1,663,603	+				+0.7
1,663,603	+				+0.2
1,663,603	+				-0.2
1,663,603	+				+1.3
1,663,603	+				-0.4
1,663,603	+				-3.6
1,663,603	+				+1.0
1,663,604	-				+1.0
1,663,604	-				+0.0
1,663,604	-				+0.7
1,663,604	-				+1.5
1,663,604	-				-0.3
1,663,604	-				-0.3
1,663,630	+		PFLU_RS07470	0.16	-0.9
1,663,630	+		PFLU_RS07470	0.16	-0.5
1,663,630	+		PFLU_RS07470	0.16	-0.9
1,663,630	+		PFLU_RS07470	0.16	-0.5
1,663,630	+		PFLU_RS07470	0.16	+2.3
1,663,630	+		PFLU_RS07470	0.16	-0.3
1,663,630	+		PFLU_RS07470	0.16	+1.7
1,663,630	+		PFLU_RS07470	0.16	-0.3
1,663,630	+		PFLU_RS07470	0.16	+1.3
1,663,631	-		PFLU_RS07470	0.17	+0.4
1,663,631	-		PFLU_RS07470	0.17	-1.4
1,663,631	-		PFLU_RS07470	0.17	-0.0
1,663,631	-		PFLU_RS07470	0.17	-1.4
1,663,631	-		PFLU_RS07470	0.17	-1.7
1,663,631	-		PFLU_RS07470	0.17	-1.0
1,663,631	-		PFLU_RS07470	0.17	+0.7
1,663,631	-		PFLU_RS07470	0.17	+0.4
1,663,631	-		PFLU_RS07470	0.17	+0.4
1,663,631	-		PFLU_RS07470	0.17	+0.3
1,663,631	-		PFLU_RS07470	0.17	+4.4
1,663,631	-		PFLU_RS07470	0.17	-0.3
1,663,636	+		PFLU_RS07470	0.18	+1.3
1,663,636	+		PFLU_RS07470	0.18	-0.7
1,663,636	+		PFLU_RS07470	0.18	-0.0
1,663,636	+		PFLU_RS07470	0.18	+0.3
1,663,636	+		PFLU_RS07470	0.18	-2.5
1,663,636	+		PFLU_RS07470	0.18	-0.5
1,663,636	+		PFLU_RS07470	0.18	-0.3
1,663,636	+		PFLU_RS07470	0.18	+1.1
1,663,636	+		PFLU_RS07470	0.18	+2.1
1,663,636	+		PFLU_RS07470	0.18	-1.7
1,663,636	+		PFLU_RS07470	0.18	+3.2
1,663,637	-		PFLU_RS07470	0.19	-0.9
1,663,637	-		PFLU_RS07470	0.19	+1.8
1,663,637	-		PFLU_RS07470	0.19	-0.3
1,663,637	-		PFLU_RS07470	0.19	-0.8
1,663,637	-		PFLU_RS07470	0.19	+1.6
1,663,637	-		PFLU_RS07470	0.19	-1.4
1,663,637	-		PFLU_RS07470	0.19	-0.8
1,663,637	-		PFLU_RS07470	0.19	-2.1
1,663,637	-		PFLU_RS07470	0.19	-1.6
1,663,637	-		PFLU_RS07470	0.19	+3.9
1,663,637	-		PFLU_RS07470	0.19	+1.4
1,663,637	-		PFLU_RS07470	0.19	+1.3
1,663,637	-		PFLU_RS07470	0.19	-0.3
1,663,637	-		PFLU_RS07470	0.19	-1.0
1,663,637	-		PFLU_RS07470	0.19	-0.0
1,663,637	-		PFLU_RS07470	0.19	+2.1
1,663,637	-		PFLU_RS07470	0.19	+1.9
1,663,637	-		PFLU_RS07470	0.19	+0.3
1,663,792	+		PFLU_RS07470	0.71	+2.3
1,663,793	-		PFLU_RS07470	0.72	+2.6
1,663,793	-		PFLU_RS07470	0.72	-2.0
1,663,793	-		PFLU_RS07470	0.72	-1.6
1,663,825	+		PFLU_RS07470	0.83	+0.4
1,663,825	+		PFLU_RS07470	0.83	-1.2
1,663,825	+		PFLU_RS07470	0.83	+2.9
1,663,825	+		PFLU_RS07470	0.83	-1.2
1,663,825	+		PFLU_RS07470	0.83	+0.7
1,663,825	+		PFLU_RS07470	0.83	-0.5
1,663,825	+		PFLU_RS07470	0.83	-0.7
1,663,825	+		PFLU_RS07470	0.83	+1.3
1,663,825	+		PFLU_RS07470	0.83	+1.0
1,663,826	-		PFLU_RS07470	0.83	-0.3
1,663,826	-		PFLU_RS07470	0.83	-1.4
1,663,826	-		PFLU_RS07470	0.83	-0.2
1,663,860	+				+1.4
1,663,899	-				-0.3
1,663,899	-				-2.4
1,663,899	-				-0.7
1,663,907	+				-0.7
1,663,908	-				+1.7
1,663,908	-				+1.2
1,663,918	+				-2.4
1,663,918	+				-2.8
1,663,918	+				-1.5
1,663,918	+				+1.3
1,663,918	+				+2.4
1,663,918	+				+0.9
1,663,918	+				-0.8
1,663,918	+				+1.6
1,663,918	+				+0.7
1,663,918	+				-0.3
1,663,918	+				+1.6
1,663,919	-				+1.3
1,663,919	-				+1.3
1,663,919	-				-0.5
1,663,919	-				-1.9
1,663,919	-				-0.6
1,663,919	-				-1.1
1,663,919	-				+1.7
1,663,919	-				+2.8
1,663,920	+				-1.6
1,663,920	+				+2.3
1,663,920	+				+0.2
1,663,920	+				-0.4
1,663,920	+				+1.1
1,663,920	+				+1.7
1,663,920	+				-0.7
1,663,920	+				-1.4
1,663,920	+				+4.0
1,663,920	+				+1.1
1,663,920	+				-0.5
1,663,920	+				-2.8
1,663,920	+				-0.7
1,663,921	-				-1.9
1,663,921	-				+0.5
1,663,921	-				-0.6
1,663,921	-				-1.2
1,663,921	-				+2.0
1,663,978	+				+2.1
1,663,978	+				-0.9
1,663,978	+				+3.0
1,663,978	+				-0.9
1,663,978	+				-1.6
1,663,978	+				-1.4
1,663,978	+				+1.0
1,663,979	-				+1.1
1,663,979	-				-1.3
1,663,979	-				-2.1
1,664,019	+				-0.3
1,664,020	-				+1.1
1,664,146	+		PFLU_RS07475	0.17	+2.0
1,664,146	+		PFLU_RS07475	0.17	-3.0
1,664,146	+		PFLU_RS07475	0.17	+0.7
1,664,292	+		PFLU_RS07475	0.33	+1.1
1,664,292	+		PFLU_RS07475	0.33	-0.6
1,664,292	+		PFLU_RS07475	0.33	-0.2
1,664,292	+		PFLU_RS07475	0.33	-0.6
1,664,292	+		PFLU_RS07475	0.33	-1.0
1,664,292	+		PFLU_RS07475	0.33	+1.1
1,664,292	+		PFLU_RS07475	0.33	+0.1
1,664,292	+		PFLU_RS07475	0.33	+0.7
1,664,292	+		PFLU_RS07475	0.33	-1.6
1,664,292	+		PFLU_RS07475	0.33	-0.0
1,664,292	+		PFLU_RS07475	0.33	-0.5
1,664,292	+		PFLU_RS07475	0.33	-2.0
1,664,292	+		PFLU_RS07475	0.33	-1.2
1,664,292	+		PFLU_RS07475	0.33	-1.5
1,664,292	+		PFLU_RS07475	0.33	-0.9
1,664,292	+		PFLU_RS07475	0.33	+1.9
1,664,292	+		PFLU_RS07475	0.33	-1.0
1,664,292	+		PFLU_RS07475	0.33	-0.2
1,664,292	+		PFLU_RS07475	0.33	-0.2
1,664,292	+		PFLU_RS07475	0.33	+1.8
1,664,292	+		PFLU_RS07475	0.33	+0.7
1,664,292	+		PFLU_RS07475	0.33	+0.2
1,664,292	+		PFLU_RS07475	0.33	-0.3
1,664,293	-		PFLU_RS07475	0.33	-1.8
1,664,293	-		PFLU_RS07475	0.33	-1.0
1,664,293	-		PFLU_RS07475	0.33	-2.3
1,664,293	-		PFLU_RS07475	0.33	-0.0
1,664,293	-		PFLU_RS07475	0.33	-2.2
1,664,293	-		PFLU_RS07475	0.33	+1.1
1,664,293	-		PFLU_RS07475	0.33	-2.5
1,664,293	-		PFLU_RS07475	0.33	-0.7
1,664,293	-		PFLU_RS07475	0.33	-2.5
1,664,293	-		PFLU_RS07475	0.33	-0.5
1,664,293	-		PFLU_RS07475	0.33	+1.8
1,664,293	-		PFLU_RS07475	0.33	-0.3
1,664,293	-		PFLU_RS07475	0.33	-1.4
1,664,293	-		PFLU_RS07475	0.33	-0.5
1,664,293	-		PFLU_RS07475	0.33	+0.4
1,664,293	-		PFLU_RS07475	0.33	-2.3
1,664,293	-		PFLU_RS07475	0.33	+0.1
1,664,293	-		PFLU_RS07475	0.33	-2.3
1,664,293	-		PFLU_RS07475	0.33	-0.9
1,664,293	-		PFLU_RS07475	0.33	-0.3
1,664,348	+		PFLU_RS07475	0.39	+1.7
1,664,348	+		PFLU_RS07475	0.39	+2.0
1,664,348	+		PFLU_RS07475	0.39	+1.1
1,664,348	+		PFLU_RS07475	0.39	+1.1
1,664,348	+		PFLU_RS07475	0.39	+0.1
1,664,348	+		PFLU_RS07475	0.39	-0.0
1,664,348	+		PFLU_RS07475	0.39	-0.3
1,664,349	-		PFLU_RS07475	0.39	-2.0
1,664,349	-		PFLU_RS07475	0.39	+0.8
1,664,349	-		PFLU_RS07475	0.39	+2.3
1,664,349	-		PFLU_RS07475	0.39	-0.2
1,664,349	-		PFLU_RS07475	0.39	+0.5
1,664,349	-		PFLU_RS07475	0.39	+0.5
1,664,464	-		PFLU_RS07475	0.52	-0.5
1,664,464	-		PFLU_RS07475	0.52	-1.8
1,664,553	+		PFLU_RS07475	0.61	-1.2
1,664,553	+		PFLU_RS07475	0.61	+0.8
1,664,553	+		PFLU_RS07475	0.61	+0.3
1,664,553	+		PFLU_RS07475	0.61	+3.3
1,664,553	+		PFLU_RS07475	0.61	-1.0
1,664,554	-		PFLU_RS07475	0.61	-2.2
1,664,554	-		PFLU_RS07475	0.61	+0.8
1,664,554	-		PFLU_RS07475	0.61	+0.3
1,664,554	-		PFLU_RS07475	0.61	+4.0
1,664,554	-		PFLU_RS07475	0.61	-0.5
1,664,554	-		PFLU_RS07475	0.61	+2.7
1,664,598	+		PFLU_RS07475	0.66	-2.5
1,664,598	+		PFLU_RS07475	0.66	+0.7
1,664,599	-		PFLU_RS07475	0.66	+2.3
1,664,599	-		PFLU_RS07475	0.66	+0.7
1,664,862	+				-2.0
1,664,862	+				-0.6
1,664,862	+				+2.2
1,664,863	-				-2.0
1,664,863	-				+1.1
1,664,863	-				-1.6
1,664,863	-				+0.7
1,664,863	-				-0.9
1,664,863	-				-2.4
1,664,863	-				+1.5
1,664,974	+				-0.7
1,664,974	+				-1.0
1,664,974	+				+2.1
1,664,975	-				-1.8
1,664,975	-				+0.3
1,664,975	-				+2.8
1,664,975	-				+1.0
1,664,975	-				+1.1
1,664,975	-				+0.0
1,665,021	+				-0.6
1,665,021	+				-1.3
1,665,021	+				-0.5
1,665,021	+				-3.0
1,665,021	+				+0.7
1,665,022	-				-1.8
1,665,022	-				-1.0
1,665,022	-				-0.1
1,665,042	+				+2.8
1,665,042	+				-2.2
1,665,043	-				+0.5
1,665,043	-				-0.0
1,665,043	-				+4.1
1,665,043	-				-0.6
1,665,043	-				-2.0
1,665,118	-		PFLU_RS07480	0.13	+3.3
1,665,177	+		PFLU_RS07480	0.23	+3.4
1,665,177	+		PFLU_RS07480	0.23	+0.1
1,665,462	+		PFLU_RS07480	0.72	-0.7
1,665,489	+		PFLU_RS07480	0.77	+2.3
1,665,489	+		PFLU_RS07480	0.77	+2.7
1,665,490	-		PFLU_RS07480	0.77	+0.1
1,665,490	-		PFLU_RS07480	0.77	+2.1
1,665,490	-		PFLU_RS07480	0.77	-2.0
1,665,490	-		PFLU_RS07480	0.77	-1.5
1,665,490	-		PFLU_RS07480	0.77	+1.3
1,665,661	+				+2.0
1,665,661	+				+0.7
1,665,661	+				-1.2
1,665,661	+				-1.5
1,665,661	+				+1.3
1,665,662	-				-0.6
1,665,662	-				+1.3
1,665,675	+				+3.7
1,665,675	+				+2.6
1,665,675	+				+1.2
1,665,676	-				-2.2
1,665,676	-				-1.8
1,665,676	-				+1.7
1,665,693	+				-0.6
1,665,693	+				+1.3
1,665,693	+				+0.1
1,665,693	+				+1.8
1,665,694	-				+2.1
1,665,694	-				-1.4
1,665,737	+				-0.5
1,665,738	-				-2.2
1,665,738	-				+3.5
1,665,758	+				-2.0
1,665,758	+				-0.6
1,665,758	+				-0.3
1,665,758	+				-2.0
1,665,759	-				+1.8
1,665,764	+				+2.9
1,665,772	+				+0.3
1,665,772	+				-1.8
1,665,772	+				-1.0
1,665,772	+				-1.0
1,665,772	+				+3.8
1,665,772	+				-0.9
1,665,772	+				-1.0
1,665,772	+				-1.4
1,665,772	+				+1.1
1,665,773	-				-0.5
1,665,773	-				+0.9
1,665,773	-				-0.8
1,665,773	-				+2.8
1,665,773	-				-1.7
1,665,773	-				-0.4
1,665,773	-				-1.3
1,665,773	-				-0.0
1,665,773	-				+0.8
1,665,773	-				+1.1
1,665,914	+		PFLU_RS07485	0.30	+0.6
1,665,914	+		PFLU_RS07485	0.30	-0.4
1,665,914	+		PFLU_RS07485	0.30	+3.1
1,665,914	+		PFLU_RS07485	0.30	-1.5
1,665,915	-		PFLU_RS07485	0.30	-0.3
1,665,915	-		PFLU_RS07485	0.30	-2.4
1,665,915	-		PFLU_RS07485	0.30	-2.2
1,665,915	-		PFLU_RS07485	0.30	+3.6