Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS07460

Experiment: Shikimic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Shikimic Acid (C)
1,660,787	-		PFLU_RS07455	0.39	+1.9
1,660,834	+		PFLU_RS07455	0.42	-1.0
1,660,834	+		PFLU_RS07455	0.42	+2.3
1,660,834	+		PFLU_RS07455	0.42	+0.9
1,660,834	+		PFLU_RS07455	0.42	-1.6
1,660,834	+		PFLU_RS07455	0.42	+2.2
1,660,834	+		PFLU_RS07455	0.42	+1.4
1,660,835	-		PFLU_RS07455	0.42	-1.3
1,660,835	-		PFLU_RS07455	0.42	-0.7
1,660,835	-		PFLU_RS07455	0.42	-0.5
1,660,835	-		PFLU_RS07455	0.42	+0.7
1,660,885	+		PFLU_RS07455	0.46	-1.0
1,660,960	+		PFLU_RS07455	0.51	+1.7
1,660,989	+		PFLU_RS07455	0.53	-0.0
1,660,989	+		PFLU_RS07455	0.53	-1.3
1,660,989	+		PFLU_RS07455	0.53	-0.6
1,660,989	+		PFLU_RS07455	0.53	+0.3
1,660,989	+		PFLU_RS07455	0.53	-1.2
1,660,990	-		PFLU_RS07455	0.53	-2.2
1,660,990	-		PFLU_RS07455	0.53	+3.4
1,660,990	-		PFLU_RS07455	0.53	+4.3
1,660,990	-		PFLU_RS07455	0.53	+0.1
1,660,990	-		PFLU_RS07455	0.53	+0.9
1,660,990	-		PFLU_RS07455	0.53	+0.4
1,661,227	+		PFLU_RS07455	0.71	-1.3
1,661,227	+		PFLU_RS07455	0.71	-0.0
1,661,227	+		PFLU_RS07455	0.71	+1.4
1,661,228	-		PFLU_RS07455	0.71	-1.3
1,661,228	-		PFLU_RS07455	0.71	-0.5
1,661,228	-		PFLU_RS07455	0.71	+2.6
1,661,322	+		PFLU_RS07455	0.78	-2.1
1,661,322	+		PFLU_RS07455	0.78	-1.4
1,661,322	+		PFLU_RS07455	0.78	-1.7
1,661,322	+		PFLU_RS07455	0.78	+2.3
1,661,323	-		PFLU_RS07455	0.78	-1.8
1,661,323	-		PFLU_RS07455	0.78	+1.1
1,661,323	-		PFLU_RS07455	0.78	+0.3
1,661,323	-		PFLU_RS07455	0.78	-1.2
1,661,323	-		PFLU_RS07455	0.78	+2.1
1,661,347	+		PFLU_RS07455	0.79	-0.5
1,661,347	+		PFLU_RS07455	0.79	+2.9
1,661,347	+		PFLU_RS07455	0.79	-0.3
1,661,348	-		PFLU_RS07455	0.80	+0.7
1,661,348	-		PFLU_RS07455	0.80	-2.2
1,661,542	+				+1.7
1,661,542	+				-0.7
1,661,542	+				+0.3
1,661,542	+				+1.9
1,661,543	-				+0.9
1,661,543	-				-0.0
1,661,543	-				-1.2
1,661,543	-				-2.2
1,661,543	-				+2.2
1,661,543	-				-3.5
1,661,543	-				+2.2
1,661,552	+				+1.6
1,661,612	-				-1.0
1,661,612	-				+0.9
1,661,612	-				+2.8
1,661,612	-				-1.3
1,661,612	-				+0.5
1,661,679	+				+2.5
1,661,679	+				-2.4
1,661,679	+				+0.7
1,661,679	+				-1.4
1,661,679	+				+0.9
1,661,684	+				+1.0
1,661,684	+				-0.4
1,661,767	-				+1.5
1,662,133	+		PFLU_RS07460	0.67	+0.3
1,662,133	+		PFLU_RS07460	0.67	+2.6
1,662,133	+		PFLU_RS07460	0.67	-1.0
1,662,133	+		PFLU_RS07460	0.67	-0.3
1,662,133	+		PFLU_RS07460	0.67	+0.1
1,662,133	+		PFLU_RS07460	0.67	+0.4
1,662,133	+		PFLU_RS07460	0.67	+0.2
1,662,133	+		PFLU_RS07460	0.67	+1.2
1,662,134	-		PFLU_RS07460	0.67	+0.9
1,662,134	-		PFLU_RS07460	0.67	+2.3
1,662,134	-		PFLU_RS07460	0.67	+1.7
1,662,134	-		PFLU_RS07460	0.67	-2.7
1,662,134	-		PFLU_RS07460	0.67	-1.3
1,662,134	-		PFLU_RS07460	0.67	-1.6
1,662,134	-		PFLU_RS07460	0.67	+0.1
1,662,306	+				-1.4
1,662,306	+				+0.7
1,662,306	+				+1.0
1,662,306	+				+0.8
1,662,306	+				+2.5
1,662,306	+				-0.7
1,662,306	+				+0.7
1,662,306	+				-0.5
1,662,306	+				-1.2
1,662,306	+				+0.2
1,662,306	+				+0.4
1,662,306	+				-0.0
1,662,306	+				+5.1
1,662,306	+				-1.9
1,662,307	-				-1.5
1,662,307	-				-0.4
1,662,307	-				-1.8
1,662,307	-				-0.0
1,662,307	-				+2.7
1,662,307	-				-2.5
1,662,307	-				+1.6
1,662,307	-				-2.6
1,662,307	-				-1.3
1,662,307	-				+2.3
1,662,307	-				+0.7
1,662,307	-				-2.0
1,662,307	-				+1.1
1,662,307	-				+0.4
1,662,307	-				-0.7
1,662,307	-				-2.4
1,662,307	-				-0.9
1,662,307	-				-0.8
1,662,307	-				+0.7
1,662,313	+				+0.4
1,662,313	+				-1.4
1,662,313	+				-0.2
1,662,313	+				-1.3
1,662,313	+				-0.6
1,662,313	+				+0.3
1,662,313	+				-1.6
1,662,313	+				-0.7
1,662,313	+				+0.7
1,662,313	+				-2.0
1,662,314	-				-1.4
1,662,314	-				-0.0
1,662,314	-				+1.5
1,662,314	-				+1.0
1,662,314	-				+0.7
1,662,317	+				-0.3
1,662,317	+				+3.4
1,662,317	+				+2.2
1,662,317	+				-1.2
1,662,317	+				+0.6
1,662,317	+				-1.8
1,662,317	+				-1.3
1,662,317	+				-1.9
1,662,317	+				+1.7
1,662,317	+				+0.8
1,662,317	+				+0.1
1,662,317	+				+0.3
1,662,318	-				+0.0
1,662,318	-				-0.8
1,662,318	-				+0.4
1,662,318	-				+1.3
1,662,318	-				+1.5
1,662,318	-				-1.3
1,662,318	-				-0.7
1,662,318	-				-0.7
1,662,318	-				+2.2
1,662,318	-				+0.8
1,662,318	-				+0.3
1,662,318	-				+1.1
1,662,318	-				-1.0
1,662,318	-				-1.0
1,662,318	-				+2.2
1,662,327	+				-2.0
1,662,327	+				+2.4
1,662,327	+				+1.1
1,662,327	+				+0.8
1,662,327	+				-1.9
1,662,327	+				-1.6
1,662,327	+				-0.9
1,662,327	+				+1.9
1,662,327	+				-1.2
1,662,328	-				-0.3
1,662,328	-				-1.3
1,662,328	-				-1.0
1,662,328	-				+1.0
1,662,328	-				-1.6
1,662,328	-				-1.6
1,662,328	-				-0.5
1,662,328	-				+0.3
1,662,328	-				-0.6
1,662,328	-				+0.3
1,662,328	-				-2.7
1,662,346	+				-0.6
1,662,346	+				+1.3
1,662,346	+				+2.1
1,662,347	-				-1.3
1,662,347	-				-2.2
1,662,347	-				-1.7
1,662,347	-				-1.6
1,662,417	+				+2.8
1,662,417	+				-0.5
1,662,417	+				-1.4
1,662,417	+				-0.9
1,662,417	+				-1.6
1,662,417	+				-0.0
1,662,417	+				+0.5
1,662,417	+				-0.5
1,662,417	+				+0.5
1,662,417	+				-1.7
1,662,417	+				-1.8
1,662,417	+				-1.3
1,662,418	-				+1.3
1,662,418	-				+0.4
1,662,418	-				+2.0
1,662,418	-				-0.3
1,662,418	-				-0.7
1,662,418	-				-1.8
1,662,418	-				+1.7
1,662,419	+				+2.0
1,662,419	+				-2.4
1,662,419	+				+1.2
1,662,419	+				-1.7
1,662,419	+				+0.3
1,662,419	+				-1.0
1,662,419	+				+2.9
1,662,419	+				+0.8
1,662,419	+				-0.0
1,662,419	+				-1.7
1,662,419	+				+1.7
1,662,419	+				+0.2
1,662,419	+				-0.9
1,662,419	+				+1.3
1,662,419	+				+0.3
1,662,419	+				-1.3
1,662,419	+				-2.7
1,662,419	+				-1.6
1,662,419	+				-0.2
1,662,419	+				+2.0
1,662,419	+				-1.2
1,662,419	+				-2.5
1,662,419	+				-0.3
1,662,419	+				+1.0
1,662,419	+				+2.1
1,662,419	+				+1.4
1,662,419	+				+2.0
1,662,419	+				-1.4
1,662,419	+				-1.0
1,662,419	+				-2.3
1,662,419	+				+0.4
1,662,419	+				-0.0
1,662,419	+				+2.8
1,662,419	+				-1.6
1,662,419	+				+0.5
1,662,419	+				+1.3
1,662,419	+				-0.2
1,662,420	-				+1.2
1,662,420	-				+1.4
1,662,420	-				-1.6
1,662,420	-				-0.5
1,662,420	-				-2.4
1,662,420	-				-0.5
1,662,420	-				-3.0
1,662,420	-				-2.3
1,662,420	-				-0.9
1,662,420	-				-0.1
1,662,420	-				-0.0
1,662,420	-				-0.3
1,662,420	-				+1.3
1,662,420	-				+0.8
1,662,420	-				-0.4
1,662,420	-				-1.3
1,662,420	-				-2.0
1,662,420	-				-2.8
1,662,420	-				-3.0
1,662,420	-				+1.8
1,662,420	-				+0.3
1,662,420	-				+0.5
1,662,420	-				+1.3
1,662,420	-				+2.0
1,662,420	-				+1.2
1,662,420	-				-1.6
1,662,420	-				+3.1
1,662,420	-				+1.1
1,662,420	-				-1.2
1,662,420	-				+3.1
1,662,420	-				-1.9
1,662,420	-				-1.3
1,662,420	-				+0.3
1,662,420	-				-0.3
1,662,420	-				+2.2
1,662,420	-				-0.5
1,662,421	+				+0.5
1,662,421	+				-1.0
1,662,421	+				+0.3
1,662,421	+				+1.4
1,662,421	+				-0.0
1,662,421	+				-3.3
1,662,421	+				+0.3
1,662,421	+				-0.0
1,662,421	+				-1.0
1,662,421	+				+0.7
1,662,421	+				+0.3
1,662,421	+				+0.6
1,662,421	+				+1.3
1,662,421	+				-2.0
1,662,421	+				+0.3
1,662,421	+				-0.3
1,662,421	+				+0.3
1,662,421	+				-2.8
1,662,421	+				-0.5
1,662,421	+				+2.8
1,662,421	+				+1.4
1,662,421	+				+0.1
1,662,421	+				+1.1
1,662,421	+				+0.7
1,662,421	+				-1.0
1,662,421	+				+2.1
1,662,421	+				-0.5
1,662,421	+				-1.5
1,662,421	+				+2.4
1,662,421	+				-2.0
1,662,421	+				-1.5
1,662,421	+				-2.2
1,662,421	+				-1.7
1,662,421	+				-1.3
1,662,422	-				+1.8
1,662,422	-				-0.2
1,662,422	-				+4.5
1,662,422	-				+0.5
1,662,422	-				+0.3
1,662,422	-				-2.4
1,662,422	-				-2.4
1,662,422	-				+1.5
1,662,422	-				+0.7
1,662,422	-				-0.0
1,662,422	-				-0.7
1,662,422	-				-3.5
1,662,422	-				+0.6
1,662,422	-				-0.7
1,662,422	-				+4.2
1,662,422	-				+2.0
1,662,422	-				-0.0
1,662,422	-				-2.5
1,662,422	-				-1.8
1,662,422	-				+0.3
1,662,422	-				+0.8
1,662,422	-				+2.1
1,662,422	-				-1.3
1,662,422	-				+0.6
1,662,422	-				+2.2
1,662,422	-				-1.4
1,662,422	-				-0.9
1,662,422	-				+0.9
1,662,422	-				-1.7
1,662,422	-				-0.0
1,662,422	-				-0.0
1,662,463	+				+2.1
1,662,464	-				-2.9
1,662,487	+				-1.7
1,662,569	+		PFLU_RS07465	0.10	-1.3
1,662,569	+		PFLU_RS07465	0.10	-1.3
1,662,569	+		PFLU_RS07465	0.10	-2.2
1,662,570	-		PFLU_RS07465	0.10	-0.2
1,662,570	-		PFLU_RS07465	0.10	-1.8
1,662,570	-		PFLU_RS07465	0.10	-0.3
1,662,570	-		PFLU_RS07465	0.10	+0.7
1,662,606	+		PFLU_RS07465	0.14	+1.4
1,662,607	-		PFLU_RS07465	0.14	-1.2
1,662,614	+		PFLU_RS07465	0.14	-0.9
1,662,614	+		PFLU_RS07465	0.14	+1.8
1,662,614	+		PFLU_RS07465	0.14	+0.5
1,662,615	-		PFLU_RS07465	0.14	-1.3
1,662,615	-		PFLU_RS07465	0.14	-0.7
1,662,615	-		PFLU_RS07465	0.14	-2.1
1,662,782	+		PFLU_RS07465	0.29	-1.2
1,662,783	-		PFLU_RS07465	0.29	-1.9
1,662,809	+		PFLU_RS07465	0.31	-1.6
1,662,809	+		PFLU_RS07465	0.31	-1.4
1,662,908	+		PFLU_RS07465	0.40	+1.6
1,662,909	-		PFLU_RS07465	0.40	-0.7
1,662,909	-		PFLU_RS07465	0.40	-2.2
1,662,909	-		PFLU_RS07465	0.40	+2.3
1,662,944	+		PFLU_RS07465	0.43	-2.9
1,662,944	+		PFLU_RS07465	0.43	-0.9
1,662,945	-		PFLU_RS07465	0.43	+0.5
1,662,945	-		PFLU_RS07465	0.43	-0.5
1,662,981	-		PFLU_RS07465	0.47	-2.3
1,663,043	+		PFLU_RS07465	0.52	-0.3
1,663,044	-		PFLU_RS07465	0.52	+0.5
1,663,052	+		PFLU_RS07465	0.53	-1.7
1,663,052	+		PFLU_RS07465	0.53	-1.3
1,663,052	+		PFLU_RS07465	0.53	-1.4
1,663,053	-		PFLU_RS07465	0.53	-0.5
1,663,053	-		PFLU_RS07465	0.53	-1.6