Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS20015

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS20005 and PFLU_RS20010 are separated by 91 nucleotidesPFLU_RS20010 and PFLU_RS20015 are separated by 121 nucleotidesPFLU_RS20015 and PFLU_RS20020 are separated by 6 nucleotides PFLU_RS20005: PFLU_RS20005 - TonB-dependent receptor, at 4,526,633 to 4,529,038 _RS20005 PFLU_RS20010: PFLU_RS20010 - Lrp/AsnC family transcriptional regulator, at 4,529,130 to 4,529,612 _RS20010 PFLU_RS20015: PFLU_RS20015 - transporter, at 4,529,734 to 4,531,134 _RS20015 PFLU_RS20020: PFLU_RS20020 - gamma-glutamyltransferase family protein, at 4,531,141 to 4,532,751 _RS20020 Position (kb) 4529 4530 4531 4532Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4528.915 kb on - strandat 4528.944 kb on + strandat 4528.944 kb on + strandat 4528.945 kb on - strandat 4529.067 kb on - strandat 4529.240 kb on - strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.296 kb on + strand, within PFLU_RS20010at 4529.297 kb on - strand, within PFLU_RS20010at 4529.297 kb on - strand, within PFLU_RS20010at 4529.297 kb on - strand, within PFLU_RS20010at 4529.297 kb on - strand, within PFLU_RS20010at 4529.297 kb on - strand, within PFLU_RS20010at 4529.297 kb on - strand, within PFLU_RS20010at 4529.297 kb on - strand, within PFLU_RS20010at 4529.297 kb on - strand, within PFLU_RS20010at 4529.297 kb on - strand, within PFLU_RS20010at 4529.299 kb on + strand, within PFLU_RS20010at 4529.299 kb on + strand, within PFLU_RS20010at 4529.299 kb on + strand, within PFLU_RS20010at 4529.299 kb on + strand, within PFLU_RS20010at 4529.299 kb on + strand, within PFLU_RS20010at 4529.299 kb on + strand, within PFLU_RS20010at 4529.300 kb on - strand, within PFLU_RS20010at 4529.300 kb on - strand, within PFLU_RS20010at 4529.300 kb on - strand, within PFLU_RS20010at 4529.300 kb on - strand, within PFLU_RS20010at 4529.693 kb on + strandat 4529.694 kb on - strandat 4529.694 kb on - strandat 4529.694 kb on - strandat 4529.694 kb on - strandat 4529.696 kb on + strandat 4529.847 kb on - strandat 4529.847 kb on - strandat 4530.002 kb on + strand, within PFLU_RS20015at 4530.310 kb on + strand, within PFLU_RS20015at 4530.311 kb on - strand, within PFLU_RS20015at 4530.862 kb on + strand, within PFLU_RS20015at 4530.863 kb on - strand, within PFLU_RS20015at 4530.863 kb on - strand, within PFLU_RS20015at 4531.098 kb on - strandat 4531.129 kb on + strandat 4531.130 kb on - strandat 4531.142 kb on + strandat 4531.143 kb on - strandat 4531.143 kb on - strandat 4531.143 kb on - strandat 4531.148 kb on - strandat 4531.267 kb on - strandat 4531.333 kb on - strand, within PFLU_RS20020at 4531.333 kb on - strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.434 kb on + strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.435 kb on - strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.436 kb on + strand, within PFLU_RS20020at 4531.437 kb on - strand, within PFLU_RS20020at 4531.437 kb on - strand, within PFLU_RS20020at 4531.437 kb on - strand, within PFLU_RS20020at 4531.437 kb on - strand, within PFLU_RS20020at 4531.628 kb on + strand, within PFLU_RS20020at 4531.628 kb on + strand, within PFLU_RS20020at 4531.629 kb on - strand, within PFLU_RS20020at 4531.653 kb on + strand, within PFLU_RS20020at 4531.682 kb on + strand, within PFLU_RS20020at 4531.682 kb on + strand, within PFLU_RS20020at 4531.682 kb on + strand, within PFLU_RS20020at 4531.683 kb on - strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.763 kb on + strand, within PFLU_RS20020at 4531.764 kb on - strand, within PFLU_RS20020at 4531.764 kb on - strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.820 kb on + strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.821 kb on - strand, within PFLU_RS20020at 4531.838 kb on + strand, within PFLU_RS20020at 4531.838 kb on + strand, within PFLU_RS20020at 4531.985 kb on + strand, within PFLU_RS20020at 4531.986 kb on - strand, within PFLU_RS20020at 4532.049 kb on - strand, within PFLU_RS20020at 4532.049 kb on - strand, within PFLU_RS20020at 4532.102 kb on + strand, within PFLU_RS20020

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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4,528,915 - -1.9
4,528,944 + +0.1
4,528,944 + +1.4
4,528,945 - -0.6
4,529,067 - -2.6
4,529,240 - PFLU_RS20010 0.23 +1.6
4,529,296 + PFLU_RS20010 0.34 -0.1
4,529,296 + PFLU_RS20010 0.34 +0.6
4,529,296 + PFLU_RS20010 0.34 +2.4
4,529,296 + PFLU_RS20010 0.34 +0.7
4,529,296 + PFLU_RS20010 0.34 +0.6
4,529,296 + PFLU_RS20010 0.34 -0.9
4,529,296 + PFLU_RS20010 0.34 +0.1
4,529,296 + PFLU_RS20010 0.34 -1.4
4,529,296 + PFLU_RS20010 0.34 +0.1
4,529,296 + PFLU_RS20010 0.34 -0.2
4,529,296 + PFLU_RS20010 0.34 +0.1
4,529,296 + PFLU_RS20010 0.34 +3.9
4,529,297 - PFLU_RS20010 0.35 +0.5
4,529,297 - PFLU_RS20010 0.35 -0.8
4,529,297 - PFLU_RS20010 0.35 +0.2
4,529,297 - PFLU_RS20010 0.35 -0.6
4,529,297 - PFLU_RS20010 0.35 -1.7
4,529,297 - PFLU_RS20010 0.35 +2.1
4,529,297 - PFLU_RS20010 0.35 +0.3
4,529,297 - PFLU_RS20010 0.35 -0.3
4,529,297 - PFLU_RS20010 0.35 +0.4
4,529,299 + PFLU_RS20010 0.35 +0.6
4,529,299 + PFLU_RS20010 0.35 +0.9
4,529,299 + PFLU_RS20010 0.35 -2.7
4,529,299 + PFLU_RS20010 0.35 -0.2
4,529,299 + PFLU_RS20010 0.35 +0.1
4,529,299 + PFLU_RS20010 0.35 -1.3
4,529,300 - PFLU_RS20010 0.35 +0.9
4,529,300 - PFLU_RS20010 0.35 +0.5
4,529,300 - PFLU_RS20010 0.35 +0.6
4,529,300 - PFLU_RS20010 0.35 -1.2
4,529,693 + +0.1
4,529,694 - +0.6
4,529,694 - -1.5
4,529,694 - +0.3
4,529,694 - +2.6
4,529,696 + -0.3
4,529,847 - -0.9
4,529,847 - -0.5
4,530,002 + PFLU_RS20015 0.19 +0.1
4,530,310 + PFLU_RS20015 0.41 -1.1
4,530,311 - PFLU_RS20015 0.41 +0.8
4,530,862 + PFLU_RS20015 0.81 -0.5
4,530,863 - PFLU_RS20015 0.81 +0.5
4,530,863 - PFLU_RS20015 0.81 +0.7
4,531,098 - -0.4
4,531,129 + +0.9
4,531,130 - +0.6
4,531,142 + +2.3
4,531,143 - +0.2
4,531,143 - -0.4
4,531,143 - +0.2
4,531,148 - -0.7
4,531,267 - -0.7
4,531,333 - PFLU_RS20020 0.12 +0.1
4,531,333 - PFLU_RS20020 0.12 +0.9
4,531,434 + PFLU_RS20020 0.18 +1.6
4,531,434 + PFLU_RS20020 0.18 +0.3
4,531,434 + PFLU_RS20020 0.18 +1.8
4,531,434 + PFLU_RS20020 0.18 -0.2
4,531,434 + PFLU_RS20020 0.18 +0.1
4,531,434 + PFLU_RS20020 0.18 +0.9
4,531,434 + PFLU_RS20020 0.18 -0.1
4,531,434 + PFLU_RS20020 0.18 +0.5
4,531,434 + PFLU_RS20020 0.18 -0.5
4,531,434 + PFLU_RS20020 0.18 -0.0
4,531,435 - PFLU_RS20020 0.18 -0.6
4,531,435 - PFLU_RS20020 0.18 +0.6
4,531,435 - PFLU_RS20020 0.18 +2.1
4,531,435 - PFLU_RS20020 0.18 +0.1
4,531,435 - PFLU_RS20020 0.18 -1.0
4,531,435 - PFLU_RS20020 0.18 +0.6
4,531,436 + PFLU_RS20020 0.18 +0.3
4,531,436 + PFLU_RS20020 0.18 -0.6
4,531,436 + PFLU_RS20020 0.18 -1.1
4,531,436 + PFLU_RS20020 0.18 -1.0
4,531,436 + PFLU_RS20020 0.18 -0.8
4,531,436 + PFLU_RS20020 0.18 +0.1
4,531,437 - PFLU_RS20020 0.18 -0.9
4,531,437 - PFLU_RS20020 0.18 +0.4
4,531,437 - PFLU_RS20020 0.18 +0.1
4,531,437 - PFLU_RS20020 0.18 +0.7
4,531,628 + PFLU_RS20020 0.30 +0.7
4,531,628 + PFLU_RS20020 0.30 +0.3
4,531,629 - PFLU_RS20020 0.30 -0.4
4,531,653 + PFLU_RS20020 0.32 -0.2
4,531,682 + PFLU_RS20020 0.34 +0.3
4,531,682 + PFLU_RS20020 0.34 +0.3
4,531,682 + PFLU_RS20020 0.34 -0.3
4,531,683 - PFLU_RS20020 0.34 +0.2
4,531,763 + PFLU_RS20020 0.39 +0.5
4,531,763 + PFLU_RS20020 0.39 -0.2
4,531,763 + PFLU_RS20020 0.39 +0.2
4,531,763 + PFLU_RS20020 0.39 -1.5
4,531,763 + PFLU_RS20020 0.39 -2.4
4,531,763 + PFLU_RS20020 0.39 -1.7
4,531,763 + PFLU_RS20020 0.39 -2.7
4,531,764 - PFLU_RS20020 0.39 +1.1
4,531,764 - PFLU_RS20020 0.39 +0.5
4,531,820 + PFLU_RS20020 0.42 +1.4
4,531,820 + PFLU_RS20020 0.42 +0.5
4,531,820 + PFLU_RS20020 0.42 +0.2
4,531,820 + PFLU_RS20020 0.42 +1.1
4,531,820 + PFLU_RS20020 0.42 -0.5
4,531,820 + PFLU_RS20020 0.42 +1.4
4,531,820 + PFLU_RS20020 0.42 +1.1
4,531,820 + PFLU_RS20020 0.42 +0.7
4,531,820 + PFLU_RS20020 0.42 +0.7
4,531,821 - PFLU_RS20020 0.42 +0.6
4,531,821 - PFLU_RS20020 0.42 +0.8
4,531,821 - PFLU_RS20020 0.42 -0.5
4,531,821 - PFLU_RS20020 0.42 +0.7
4,531,821 - PFLU_RS20020 0.42 +0.5
4,531,821 - PFLU_RS20020 0.42 +1.3
4,531,821 - PFLU_RS20020 0.42 +1.4
4,531,821 - PFLU_RS20020 0.42 -1.1
4,531,821 - PFLU_RS20020 0.42 -0.1
4,531,821 - PFLU_RS20020 0.42 +0.0
4,531,821 - PFLU_RS20020 0.42 +0.2
4,531,821 - PFLU_RS20020 0.42 -0.3
4,531,838 + PFLU_RS20020 0.43 -0.4
4,531,838 + PFLU_RS20020 0.43 -2.0
4,531,985 + PFLU_RS20020 0.52 -1.4
4,531,986 - PFLU_RS20020 0.52 -0.6
4,532,049 - PFLU_RS20020 0.56 +0.7
4,532,049 - PFLU_RS20020 0.56 +3.1
4,532,102 + PFLU_RS20020 0.60 +0.4

Or see this region's nucleotide sequence