Experiment: D-Fructose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS24010 and PFLU_RS24015 are separated by 393 nucleotides PFLU_RS24015 and PFLU_RS24020 are separated by 96 nucleotides PFLU_RS24020 and PFLU_RS24025 are separated by 137 nucleotides
PFLU_RS24010: PFLU_RS24010 - glycine cleavage system aminomethyltransferase GcvT, at 5,379,933 to 5,381,057
_RS24010
PFLU_RS24015: PFLU_RS24015 - cold-shock protein, at 5,381,451 to 5,381,663
_RS24015
PFLU_RS24020: PFLU_RS24020 - RDD family protein, at 5,381,760 to 5,382,248
_RS24020
PFLU_RS24025: PFLU_RS24025 - quinolinate synthase NadA, at 5,382,386 to 5,383,444
_RS24025
Position (kb) 5381
5382
5383 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 5380.800 kb on - strand, within PFLU_RS24010 at 5380.807 kb on + strand, within PFLU_RS24010 at 5380.808 kb on - strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.888 kb on + strand, within PFLU_RS24010 at 5380.889 kb on - strand, within PFLU_RS24010 at 5380.889 kb on - strand, within PFLU_RS24010 at 5380.889 kb on - strand, within PFLU_RS24010 at 5381.014 kb on + strand at 5381.014 kb on + strand at 5381.018 kb on + strand at 5381.018 kb on + strand at 5381.019 kb on - strand at 5381.019 kb on - strand at 5381.033 kb on - strand at 5381.043 kb on + strand at 5381.043 kb on + strand at 5381.044 kb on - strand at 5381.044 kb on - strand at 5381.076 kb on - strand at 5381.076 kb on - strand at 5381.076 kb on - strand at 5381.076 kb on - strand at 5381.120 kb on + strand at 5381.120 kb on + strand at 5381.152 kb on - strand at 5381.163 kb on + strand at 5381.164 kb on - strand at 5381.211 kb on + strand at 5381.211 kb on + strand at 5381.211 kb on + strand at 5381.211 kb on + strand at 5381.211 kb on + strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.212 kb on - strand at 5381.224 kb on - strand at 5381.224 kb on - strand at 5381.272 kb on - strand at 5381.272 kb on - strand at 5381.333 kb on + strand at 5381.334 kb on - strand at 5381.342 kb on + strand at 5381.342 kb on + strand at 5381.342 kb on + strand at 5381.343 kb on - strand at 5381.343 kb on - strand at 5381.343 kb on - strand at 5381.343 kb on - strand at 5381.351 kb on + strand at 5381.352 kb on - strand at 5381.352 kb on - strand at 5381.352 kb on - strand at 5381.352 kb on - strand at 5381.372 kb on + strand at 5381.372 kb on + strand at 5381.372 kb on + strand at 5381.373 kb on - strand at 5381.424 kb on - strand at 5381.510 kb on + strand, within PFLU_RS24015 at 5381.510 kb on + strand, within PFLU_RS24015 at 5381.510 kb on + strand, within PFLU_RS24015 at 5381.511 kb on - strand, within PFLU_RS24015 at 5381.555 kb on + strand, within PFLU_RS24015 at 5381.647 kb on + strand at 5381.647 kb on + strand at 5381.647 kb on + strand at 5381.648 kb on - strand at 5381.648 kb on - strand at 5381.648 kb on - strand at 5381.648 kb on - strand at 5381.728 kb on + strand at 5381.745 kb on + strand at 5381.835 kb on + strand, within PFLU_RS24020 at 5381.835 kb on + strand, within PFLU_RS24020 at 5381.835 kb on + strand, within PFLU_RS24020 at 5381.835 kb on + strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.836 kb on - strand, within PFLU_RS24020 at 5381.879 kb on + strand, within PFLU_RS24020 at 5381.880 kb on - strand, within PFLU_RS24020 at 5381.883 kb on + strand, within PFLU_RS24020 at 5381.883 kb on + strand, within PFLU_RS24020 at 5381.883 kb on + strand, within PFLU_RS24020 at 5381.884 kb on - strand, within PFLU_RS24020 at 5381.884 kb on - strand, within PFLU_RS24020 at 5381.884 kb on - strand, within PFLU_RS24020 at 5382.140 kb on - strand, within PFLU_RS24020 at 5382.159 kb on - strand, within PFLU_RS24020 at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.204 kb on + strand at 5382.205 kb on - strand at 5382.220 kb on + strand at 5382.220 kb on + strand at 5382.220 kb on + strand at 5382.221 kb on - strand at 5382.221 kb on - strand at 5382.246 kb on + strand at 5382.246 kb on + strand at 5382.247 kb on - strand at 5382.247 kb on - strand at 5382.305 kb on - strand at 5382.407 kb on - strand at 5382.407 kb on - strand at 5382.565 kb on + strand, within PFLU_RS24025 at 5382.565 kb on + strand, within PFLU_RS24025 at 5382.565 kb on + strand, within PFLU_RS24025 at 5382.565 kb on + strand, within PFLU_RS24025 at 5382.566 kb on - strand, within PFLU_RS24025 at 5382.566 kb on - strand, within PFLU_RS24025 at 5382.639 kb on + strand, within PFLU_RS24025 at 5382.640 kb on - strand, within PFLU_RS24025 at 5382.668 kb on - strand, within PFLU_RS24025 at 5382.866 kb on - strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.891 kb on + strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5382.892 kb on - strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.026 kb on + strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025 at 5383.027 kb on - strand, within PFLU_RS24025
Per-strain Table
Position Strand Gene LocusTag Fraction D-Fructose (C) remove 5,380,800 - PFLU_RS24010 0.77 -0.3 5,380,807 + PFLU_RS24010 0.78 -2.1 5,380,808 - PFLU_RS24010 0.78 -1.9 5,380,888 + PFLU_RS24010 0.85 -0.9 5,380,888 + PFLU_RS24010 0.85 +1.2 5,380,888 + PFLU_RS24010 0.85 -1.3 5,380,888 + PFLU_RS24010 0.85 -2.1 5,380,888 + PFLU_RS24010 0.85 +0.6 5,380,888 + PFLU_RS24010 0.85 +0.8 5,380,888 + PFLU_RS24010 0.85 -0.8 5,380,889 - PFLU_RS24010 0.85 -0.1 5,380,889 - PFLU_RS24010 0.85 +0.1 5,380,889 - PFLU_RS24010 0.85 -0.3 5,381,014 + +0.9 5,381,014 + -1.4 5,381,018 + +1.2 5,381,018 + +1.2 5,381,019 - -2.1 5,381,019 - +0.9 5,381,033 - +0.4 5,381,043 + +0.5 5,381,043 + +1.5 5,381,044 - -0.9 5,381,044 - +2.4 5,381,076 - +1.2 5,381,076 - -1.2 5,381,076 - +0.9 5,381,076 - -0.4 5,381,120 + +2.0 5,381,120 + +0.6 5,381,152 - -1.5 5,381,163 + -2.4 5,381,164 - -1.4 5,381,211 + +0.8 5,381,211 + -1.5 5,381,211 + -0.0 5,381,211 + +1.1 5,381,211 + +2.3 5,381,212 - +0.4 5,381,212 - -3.1 5,381,212 - +0.5 5,381,212 - -0.1 5,381,212 - +1.6 5,381,212 - +0.3 5,381,224 - +0.3 5,381,224 - -0.4 5,381,272 - -2.3 5,381,272 - +0.8 5,381,333 + +0.2 5,381,334 - +1.9 5,381,342 + +1.6 5,381,342 + +1.6 5,381,342 + -1.5 5,381,343 - -1.8 5,381,343 - +0.6 5,381,343 - +0.5 5,381,343 - -0.7 5,381,351 + +0.6 5,381,352 - +0.9 5,381,352 - +1.2 5,381,352 - -0.4 5,381,352 - -1.8 5,381,372 + +0.1 5,381,372 + +0.6 5,381,372 + -2.1 5,381,373 - +0.1 5,381,424 - -1.1 5,381,510 + PFLU_RS24015 0.28 -0.5 5,381,510 + PFLU_RS24015 0.28 +0.2 5,381,510 + PFLU_RS24015 0.28 +0.8 5,381,511 - PFLU_RS24015 0.28 +1.3 5,381,555 + PFLU_RS24015 0.49 +0.5 5,381,647 + +1.0 5,381,647 + -1.2 5,381,647 + +0.8 5,381,648 - +0.2 5,381,648 - +0.2 5,381,648 - +0.1 5,381,648 - -1.8 5,381,728 + +0.8 5,381,745 + -0.2 5,381,835 + PFLU_RS24020 0.15 -1.8 5,381,835 + PFLU_RS24020 0.15 +1.2 5,381,835 + PFLU_RS24020 0.15 -0.7 5,381,835 + PFLU_RS24020 0.15 +0.3 5,381,836 - PFLU_RS24020 0.16 -1.0 5,381,836 - PFLU_RS24020 0.16 +0.1 5,381,836 - PFLU_RS24020 0.16 +1.9 5,381,836 - PFLU_RS24020 0.16 -0.6 5,381,836 - PFLU_RS24020 0.16 +1.5 5,381,836 - PFLU_RS24020 0.16 +1.4 5,381,836 - PFLU_RS24020 0.16 +0.4 5,381,879 + PFLU_RS24020 0.24 -0.2 5,381,880 - PFLU_RS24020 0.25 -0.8 5,381,883 + PFLU_RS24020 0.25 +0.3 5,381,883 + PFLU_RS24020 0.25 -0.7 5,381,883 + PFLU_RS24020 0.25 -0.5 5,381,884 - PFLU_RS24020 0.25 -1.4 5,381,884 - PFLU_RS24020 0.25 +1.2 5,381,884 - PFLU_RS24020 0.25 -2.6 5,382,140 - PFLU_RS24020 0.78 +0.3 5,382,159 - PFLU_RS24020 0.82 -2.1 5,382,204 + -2.2 5,382,204 + +1.6 5,382,204 + +0.3 5,382,204 + +0.4 5,382,204 + -1.4 5,382,204 + -1.2 5,382,205 - +1.0 5,382,220 + +1.0 5,382,220 + +2.7 5,382,220 + -0.6 5,382,221 - -2.4 5,382,221 - +1.1 5,382,246 + -1.1 5,382,246 + -0.7 5,382,247 - +1.1 5,382,247 - +0.6 5,382,305 - -1.2 5,382,407 - -3.2 5,382,407 - -1.2 5,382,565 + PFLU_RS24025 0.17 -1.4 5,382,565 + PFLU_RS24025 0.17 -1.9 5,382,565 + PFLU_RS24025 0.17 -3.0 5,382,565 + PFLU_RS24025 0.17 +0.4 5,382,566 - PFLU_RS24025 0.17 -0.6 5,382,566 - PFLU_RS24025 0.17 -1.2 5,382,639 + PFLU_RS24025 0.24 -2.3 5,382,640 - PFLU_RS24025 0.24 +0.6 5,382,668 - PFLU_RS24025 0.27 -3.7 5,382,866 - PFLU_RS24025 0.45 -3.6 5,382,891 + PFLU_RS24025 0.48 -2.9 5,382,891 + PFLU_RS24025 0.48 +0.6 5,382,891 + PFLU_RS24025 0.48 -2.7 5,382,891 + PFLU_RS24025 0.48 +0.6 5,382,891 + PFLU_RS24025 0.48 -2.5 5,382,891 + PFLU_RS24025 0.48 -1.4 5,382,891 + PFLU_RS24025 0.48 +0.3 5,382,891 + PFLU_RS24025 0.48 -2.3 5,382,891 + PFLU_RS24025 0.48 -2.5 5,382,891 + PFLU_RS24025 0.48 -2.1 5,382,892 - PFLU_RS24025 0.48 -2.7 5,382,892 - PFLU_RS24025 0.48 -0.2 5,382,892 - PFLU_RS24025 0.48 -0.7 5,382,892 - PFLU_RS24025 0.48 +0.1 5,382,892 - PFLU_RS24025 0.48 -1.2 5,382,892 - PFLU_RS24025 0.48 -3.2 5,382,892 - PFLU_RS24025 0.48 -0.4 5,382,892 - PFLU_RS24025 0.48 -2.2 5,382,892 - PFLU_RS24025 0.48 +0.6 5,382,892 - PFLU_RS24025 0.48 +0.3 5,382,892 - PFLU_RS24025 0.48 -0.9 5,382,892 - PFLU_RS24025 0.48 -2.4 5,382,892 - PFLU_RS24025 0.48 -0.5 5,382,892 - PFLU_RS24025 0.48 -2.7 5,382,892 - PFLU_RS24025 0.48 +0.2 5,382,892 - PFLU_RS24025 0.48 -2.2 5,382,892 - PFLU_RS24025 0.48 -1.1 5,382,892 - PFLU_RS24025 0.48 -1.4 5,383,026 + PFLU_RS24025 0.60 +0.1 5,383,026 + PFLU_RS24025 0.60 -2.1 5,383,026 + PFLU_RS24025 0.60 +0.6 5,383,026 + PFLU_RS24025 0.60 -1.2 5,383,026 + PFLU_RS24025 0.60 -2.6 5,383,026 + PFLU_RS24025 0.60 -2.4 5,383,026 + PFLU_RS24025 0.60 -0.1 5,383,026 + PFLU_RS24025 0.60 -2.4 5,383,026 + PFLU_RS24025 0.60 -1.3 5,383,026 + PFLU_RS24025 0.60 -2.5 5,383,026 + PFLU_RS24025 0.60 +0.1 5,383,026 + PFLU_RS24025 0.60 -1.9 5,383,026 + PFLU_RS24025 0.60 -0.7 5,383,026 + PFLU_RS24025 0.60 -1.8 5,383,026 + PFLU_RS24025 0.60 -3.8 5,383,026 + PFLU_RS24025 0.60 -1.8 5,383,026 + PFLU_RS24025 0.60 -1.5 5,383,027 - PFLU_RS24025 0.61 -2.1 5,383,027 - PFLU_RS24025 0.61 -0.8 5,383,027 - PFLU_RS24025 0.61 -1.5 5,383,027 - PFLU_RS24025 0.61 -1.9 5,383,027 - PFLU_RS24025 0.61 -2.1 5,383,027 - PFLU_RS24025 0.61 -1.7 5,383,027 - PFLU_RS24025 0.61 +0.2 5,383,027 - PFLU_RS24025 0.61 -0.9 5,383,027 - PFLU_RS24025 0.61 -2.1 5,383,027 - PFLU_RS24025 0.61 -0.3 5,383,027 - PFLU_RS24025 0.61 -2.9 5,383,027 - PFLU_RS24025 0.61 -3.1 5,383,027 - PFLU_RS24025 0.61 -0.9
Or see this region's nucleotide sequence