Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14835

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
3,318,437	+		PFLU_RS14830	0.47	-2.3
3,318,754	+		PFLU_RS14830	0.78	-1.1
3,318,754	+		PFLU_RS14830	0.78	+0.6
3,318,754	+		PFLU_RS14830	0.78	-1.6
3,318,754	+		PFLU_RS14830	0.78	+0.2
3,318,755	-		PFLU_RS14830	0.78	-1.1
3,318,755	-		PFLU_RS14830	0.78	-1.8
3,318,758	+		PFLU_RS14830	0.78	-0.7
3,318,758	+		PFLU_RS14830	0.78	-0.9
3,318,759	-		PFLU_RS14830	0.78	-0.6
3,318,759	-		PFLU_RS14830	0.78	-0.0
3,318,759	-		PFLU_RS14830	0.78	-1.6
3,318,865	+		PFLU_RS14830	0.88	+1.2
3,318,871	+		PFLU_RS14830	0.89	-1.8
3,318,872	-		PFLU_RS14830	0.89	-0.8
3,318,937	+				-0.6
3,318,937	+				+0.5
3,318,968	+				+1.2
3,318,969	-				-1.1
3,318,969	-				-0.7
3,318,973	+				+0.2
3,319,003	+				-1.8
3,319,004	-				-1.1
3,319,091	-				-2.3
3,319,109	+				-2.3
3,319,110	-				+0.8
3,319,111	+				-0.6
3,319,112	-				-1.1
3,319,112	-				+1.2
3,319,124	+				-0.8
3,319,124	+				-1.3
3,319,131	+				+0.2
3,319,131	+				-1.4
3,319,131	+				-1.1
3,319,131	+				-0.1
3,319,131	+				+3.2
3,319,131	+				+0.1
3,319,131	+				+0.4
3,319,146	+				-0.1
3,319,147	-				-0.5
3,319,169	+				+1.8
3,319,196	-				+0.6
3,319,207	-				-2.3
3,319,214	+				-1.6
3,319,215	-				+0.5
3,319,215	-				-0.2
3,319,226	-				-0.8
3,319,233	+				-0.8
3,319,233	+				+1.4
3,319,233	+				-1.0
3,319,234	-				-2.3
3,319,234	-				+0.0
3,319,234	-				-1.4
3,319,234	-				-1.8
3,319,234	-				+1.6
3,319,234	-				-0.8
3,319,243	+				+2.2
3,319,244	-				-0.8
3,319,244	-				-0.4
3,319,250	+				+0.4
3,319,250	+				+0.0
3,319,251	-				+0.6
3,319,251	-				-1.0
3,319,251	-				+0.5
3,319,251	-				-0.4
3,319,280	-				+0.6
3,319,280	-				-2.3
3,319,325	+				+0.1
3,319,326	-				+1.2
3,319,326	-				+1.2
3,319,370	+				-0.1
3,319,370	+				-0.7
3,319,371	-				+1.6
3,319,371	-				-1.1
3,319,402	+				-0.8
3,319,403	-				-0.8
3,319,443	+				+0.9
3,319,443	+				-1.3
3,319,444	-				+1.2
3,319,551	+		PFLU_RS14835	0.19	-0.2
3,319,574	+		PFLU_RS14835	0.21	+0.5
3,319,574	+		PFLU_RS14835	0.21	-1.1
3,319,575	-		PFLU_RS14835	0.22	+0.2
3,319,575	-		PFLU_RS14835	0.22	+1.0
3,319,575	-		PFLU_RS14835	0.22	+0.2
3,319,576	+		PFLU_RS14835	0.22	+2.1
3,319,576	+		PFLU_RS14835	0.22	+0.2
3,319,576	+		PFLU_RS14835	0.22	-1.4
3,319,577	-		PFLU_RS14835	0.22	-2.6
3,319,589	-		PFLU_RS14835	0.23	+1.4
3,319,667	+		PFLU_RS14835	0.33	+0.8
3,319,667	+		PFLU_RS14835	0.33	-0.8
3,319,667	+		PFLU_RS14835	0.33	+1.6
3,319,667	+		PFLU_RS14835	0.33	+0.4
3,319,667	+		PFLU_RS14835	0.33	+1.4
3,319,679	+		PFLU_RS14835	0.34	-0.8
3,319,679	+		PFLU_RS14835	0.34	+0.6
3,319,679	+		PFLU_RS14835	0.34	-1.0
3,319,679	+		PFLU_RS14835	0.34	+1.8
3,319,721	+		PFLU_RS14835	0.39	+1.2
3,319,721	+		PFLU_RS14835	0.39	+1.2
3,319,721	+		PFLU_RS14835	0.39	+0.4
3,319,722	-		PFLU_RS14835	0.39	-1.6
3,319,722	-		PFLU_RS14835	0.39	+1.0
3,319,829	+		PFLU_RS14835	0.52	-0.1
3,319,830	-		PFLU_RS14835	0.52	-0.5
3,319,904	+		PFLU_RS14835	0.61	+0.1
3,319,905	-		PFLU_RS14835	0.62	+2.1
3,319,905	-		PFLU_RS14835	0.62	-0.7
3,320,067	-		PFLU_RS14835	0.81	+1.2
3,320,105	+		PFLU_RS14835	0.86	-1.6
3,320,105	+		PFLU_RS14835	0.86	+0.3
3,320,106	-		PFLU_RS14835	0.86	-0.2
3,320,106	-		PFLU_RS14835	0.86	-0.1
3,320,194	+				+1.2
3,320,195	-				-0.4
3,320,271	+				-0.1
3,320,275	+				+1.2
3,320,285	-				-0.8
3,320,305	+				-1.1
3,320,327	-				+0.8
3,320,342	-				+0.7
3,320,363	+				-0.1
3,320,364	-				-1.4
3,320,364	-				-1.7
3,320,405	+				+0.3
3,320,406	-				+0.6
3,320,406	-				+1.2
3,320,539	+		PFLU_RS14840	0.23	-1.0
3,320,552	+		PFLU_RS14840	0.24	-1.8
3,320,552	+		PFLU_RS14840	0.24	+0.5
3,320,552	+		PFLU_RS14840	0.24	-2.4
3,320,552	+		PFLU_RS14840	0.24	-1.4
3,320,553	-		PFLU_RS14840	0.24	-2.3
3,320,553	-		PFLU_RS14840	0.24	+2.5
3,320,553	-		PFLU_RS14840	0.24	+0.2
3,320,622	+		PFLU_RS14840	0.32	+0.2
3,320,622	+		PFLU_RS14840	0.32	-0.6
3,320,622	+		PFLU_RS14840	0.32	+0.9
3,320,623	-		PFLU_RS14840	0.32	-2.2
3,320,882	+		PFLU_RS14840	0.60	+1.4
3,320,882	+		PFLU_RS14840	0.60	+0.3
3,320,883	-		PFLU_RS14840	0.60	-1.0
3,320,883	-		PFLU_RS14840	0.60	+1.0
3,320,923	+		PFLU_RS14840	0.65	+1.2
3,320,924	-		PFLU_RS14840	0.65	-1.1
3,320,924	-		PFLU_RS14840	0.65	-0.7
3,320,924	-		PFLU_RS14840	0.65	+0.9
3,321,035	+		PFLU_RS14840	0.77	+0.7
3,321,035	+		PFLU_RS14840	0.77	-0.8
3,321,035	+		PFLU_RS14840	0.77	+1.0
3,321,035	+		PFLU_RS14840	0.77	+0.7
3,321,035	+		PFLU_RS14840	0.77	-0.8
3,321,035	+		PFLU_RS14840	0.77	+0.2
3,321,035	+		PFLU_RS14840	0.77	-0.6
3,321,035	+		PFLU_RS14840	0.77	+1.0
3,321,035	+		PFLU_RS14840	0.77	-1.6
3,321,035	+		PFLU_RS14840	0.77	+1.4
3,321,035	+		PFLU_RS14840	0.77	+1.0
3,321,035	+		PFLU_RS14840	0.77	+0.4
3,321,035	+		PFLU_RS14840	0.77	+0.5
3,321,036	-		PFLU_RS14840	0.77	-0.4
3,321,036	-		PFLU_RS14840	0.77	+0.5
3,321,036	-		PFLU_RS14840	0.77	-0.2
3,321,036	-		PFLU_RS14840	0.77	+0.5
3,321,036	-		PFLU_RS14840	0.77	+0.4
3,321,036	-		PFLU_RS14840	0.77	+0.6
3,321,036	-		PFLU_RS14840	0.77	-1.6
3,321,036	-		PFLU_RS14840	0.77	+2.8
3,321,038	+		PFLU_RS14840	0.77	+0.2
3,321,038	+		PFLU_RS14840	0.77	+1.5
3,321,038	+		PFLU_RS14840	0.77	+2.2
3,321,039	-		PFLU_RS14840	0.77	-1.1
3,321,039	-		PFLU_RS14840	0.77	-1.1
3,321,039	-		PFLU_RS14840	0.77	-0.8
3,321,039	-		PFLU_RS14840	0.77	+1.2
3,321,039	-		PFLU_RS14840	0.77	+0.2
3,321,066	+		PFLU_RS14840	0.80	-0.1
3,321,067	-		PFLU_RS14840	0.81	-0.1
3,321,188	+				+0.0
3,321,188	+				+2.6
3,321,189	-				+0.2
3,321,189	-				-0.0
3,321,189	-				-1.2
3,321,189	-				-0.9