Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS14825

Experiment: NAG (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NAG (C)
3,315,031	+				+0.9
3,315,031	+				-2.0
3,315,032	-				+1.0
3,315,032	-				-0.6
3,315,260	+		PFLU_RS14820	0.20	-2.4
3,315,261	-		PFLU_RS14820	0.20	-0.4
3,315,279	+		PFLU_RS14820	0.22	-3.0
3,315,280	-		PFLU_RS14820	0.23	-0.8
3,315,280	-		PFLU_RS14820	0.23	-1.1
3,315,280	-		PFLU_RS14820	0.23	-0.4
3,315,459	+		PFLU_RS14820	0.43	+0.5
3,315,535	+		PFLU_RS14820	0.51	-1.8
3,315,759	+		PFLU_RS14820	0.77	-1.6
3,315,759	+		PFLU_RS14820	0.77	-2.7
3,315,759	+		PFLU_RS14820	0.77	+1.2
3,315,759	+		PFLU_RS14820	0.77	+2.8
3,315,759	+		PFLU_RS14820	0.77	-0.7
3,315,759	+		PFLU_RS14820	0.77	-1.8
3,315,759	+		PFLU_RS14820	0.77	+1.2
3,315,759	+		PFLU_RS14820	0.77	-2.3
3,315,759	+		PFLU_RS14820	0.77	-0.4
3,315,760	-		PFLU_RS14820	0.77	+0.2
3,315,760	-		PFLU_RS14820	0.77	-1.8
3,315,760	-		PFLU_RS14820	0.77	+0.2
3,315,760	-		PFLU_RS14820	0.77	-2.4
3,315,930	+				-1.0
3,315,930	+				-1.0
3,315,930	+				-0.2
3,315,931	-				-0.8
3,315,931	-				-1.1
3,315,931	-				-1.1
3,315,931	-				-1.1
3,315,965	+				+0.9
3,315,966	-				+0.8
3,316,124	+				+2.5
3,316,124	+				+1.2
3,316,518	-		PFLU_RS14825	0.28	-2.6
3,316,559	+		PFLU_RS14825	0.30	-1.5
3,316,560	-		PFLU_RS14825	0.30	-1.8
3,316,560	-		PFLU_RS14825	0.30	-0.2
3,316,560	-		PFLU_RS14825	0.30	-0.3
3,316,560	-		PFLU_RS14825	0.30	-0.2
3,316,619	+		PFLU_RS14825	0.33	-0.4
3,316,619	+		PFLU_RS14825	0.33	-0.8
3,316,619	+		PFLU_RS14825	0.33	-2.1
3,316,619	+		PFLU_RS14825	0.33	-2.4
3,316,620	-		PFLU_RS14825	0.33	-0.1
3,316,620	-		PFLU_RS14825	0.33	-2.5
3,316,620	-		PFLU_RS14825	0.33	+0.2
3,316,620	-		PFLU_RS14825	0.33	-0.8
3,316,640	+		PFLU_RS14825	0.34	+1.2
3,316,640	+		PFLU_RS14825	0.34	+0.2
3,316,641	-		PFLU_RS14825	0.34	+0.2
3,316,641	-		PFLU_RS14825	0.34	+0.6
3,316,679	+		PFLU_RS14825	0.36	-0.7
3,316,679	+		PFLU_RS14825	0.36	-0.5
3,316,680	-		PFLU_RS14825	0.36	-1.8
3,316,680	-		PFLU_RS14825	0.36	+0.2
3,316,680	-		PFLU_RS14825	0.36	+0.2
3,316,680	-		PFLU_RS14825	0.36	-1.6
3,316,692	-		PFLU_RS14825	0.37	+0.8
3,316,692	-		PFLU_RS14825	0.37	-2.5
3,316,692	-		PFLU_RS14825	0.37	+0.2
3,316,754	+		PFLU_RS14825	0.40	-1.8
3,316,754	+		PFLU_RS14825	0.40	-0.4
3,316,814	+		PFLU_RS14825	0.43	+1.2
3,316,815	-		PFLU_RS14825	0.43	+1.2
3,316,842	+		PFLU_RS14825	0.44	-0.8
3,316,856	+		PFLU_RS14825	0.45	-0.6
3,316,856	+		PFLU_RS14825	0.45	-0.4
3,316,856	+		PFLU_RS14825	0.45	-2.3
3,316,856	+		PFLU_RS14825	0.45	+1.0
3,316,856	+		PFLU_RS14825	0.45	-1.0
3,316,857	-		PFLU_RS14825	0.45	+0.2
3,316,857	-		PFLU_RS14825	0.45	-0.8
3,316,857	-		PFLU_RS14825	0.45	-0.7
3,316,857	-		PFLU_RS14825	0.45	-0.6
3,316,857	-		PFLU_RS14825	0.45	-2.8
3,316,917	-		PFLU_RS14825	0.48	-2.3
3,316,926	-		PFLU_RS14825	0.48	-0.6
3,317,090	+		PFLU_RS14825	0.57	-0.6
3,317,090	+		PFLU_RS14825	0.57	-2.8
3,317,360	+		PFLU_RS14825	0.70	+0.5
3,317,360	+		PFLU_RS14825	0.70	-1.9
3,317,360	+		PFLU_RS14825	0.70	+0.4
3,317,361	-		PFLU_RS14825	0.70	-1.6
3,317,361	-		PFLU_RS14825	0.70	+0.5
3,317,361	-		PFLU_RS14825	0.70	+2.8
3,317,361	-		PFLU_RS14825	0.70	-1.5
3,317,361	-		PFLU_RS14825	0.70	+1.5
3,317,618	+		PFLU_RS14825	0.83	-0.1
3,317,618	+		PFLU_RS14825	0.83	-0.4
3,317,618	+		PFLU_RS14825	0.83	+0.9
3,317,622	+		PFLU_RS14825	0.83	-0.5
3,317,623	-		PFLU_RS14825	0.83	-1.3
3,317,699	+		PFLU_RS14825	0.87	-0.5
3,317,702	+		PFLU_RS14825	0.87	-1.1
3,317,702	+		PFLU_RS14825	0.87	-2.3
3,317,702	+		PFLU_RS14825	0.87	+1.0
3,317,702	+		PFLU_RS14825	0.87	-2.1
3,317,702	+		PFLU_RS14825	0.87	-1.8
3,317,702	+		PFLU_RS14825	0.87	+1.8
3,317,702	+		PFLU_RS14825	0.87	-0.6
3,317,703	-		PFLU_RS14825	0.87	+1.6
3,317,703	-		PFLU_RS14825	0.87	+2.2
3,317,703	-		PFLU_RS14825	0.87	-0.6
3,317,703	-		PFLU_RS14825	0.87	+0.8
3,317,703	-		PFLU_RS14825	0.87	-0.4
3,317,717	+		PFLU_RS14825	0.88	-0.1
3,317,717	+		PFLU_RS14825	0.88	-2.2
3,317,718	-		PFLU_RS14825	0.88	-1.1
3,317,718	-		PFLU_RS14825	0.88	-0.6
3,317,718	-		PFLU_RS14825	0.88	-0.7
3,317,825	+				-2.3
3,317,825	+				-1.3
3,317,825	+				-2.3
3,317,825	+				-0.9
3,317,826	-				+0.2
3,317,826	-				+0.2
3,317,826	-				+1.2
3,317,928	-				+0.2
3,317,935	+				-0.8
3,317,935	+				+1.2
3,317,936	-				+0.8
3,317,936	-				-0.1
3,317,936	-				-1.0
3,317,936	-				-0.5
3,317,936	-				-0.1
3,317,959	+				-0.4
3,317,959	+				-1.2
3,317,959	+				-0.4
3,317,960	-				-1.1
3,317,960	-				+0.8
3,317,960	-				-1.7
3,317,978	+				+0.6
3,317,978	+				+1.0
3,317,978	+				-0.4
3,317,978	+				+0.8
3,317,978	+				-0.8
3,317,978	+				-2.0
3,317,978	+				+1.6
3,317,979	-				+0.6
3,317,979	-				-1.6
3,317,979	-				-0.6
3,317,979	-				+0.2
3,317,979	-				+0.5
3,317,984	+				+0.2
3,317,984	+				-0.8
3,317,984	+				+1.2
3,317,984	+				-0.8
3,317,985	-				+0.2
3,317,985	-				+0.9
3,318,091	+		PFLU_RS14830	0.13	-2.3
3,318,091	+		PFLU_RS14830	0.13	-0.4
3,318,091	+		PFLU_RS14830	0.13	-0.4
3,318,091	+		PFLU_RS14830	0.13	+1.6
3,318,091	+		PFLU_RS14830	0.13	-1.8
3,318,092	-		PFLU_RS14830	0.13	+0.2
3,318,092	-		PFLU_RS14830	0.13	-0.8
3,318,106	+		PFLU_RS14830	0.14	-1.1
3,318,106	+		PFLU_RS14830	0.14	-0.4
3,318,106	+		PFLU_RS14830	0.14	-2.1
3,318,106	+		PFLU_RS14830	0.14	+1.6
3,318,106	+		PFLU_RS14830	0.14	-1.4
3,318,107	-		PFLU_RS14830	0.15	-0.4
3,318,107	-		PFLU_RS14830	0.15	-1.1
3,318,107	-		PFLU_RS14830	0.15	-1.4
3,318,107	-		PFLU_RS14830	0.15	-0.6
3,318,352	+		PFLU_RS14830	0.38	-1.1
3,318,352	+		PFLU_RS14830	0.38	-1.4
3,318,352	+		PFLU_RS14830	0.38	-2.0
3,318,352	+		PFLU_RS14830	0.38	+0.4
3,318,353	-		PFLU_RS14830	0.38	-0.3
3,318,437	+		PFLU_RS14830	0.47	-2.3
3,318,754	+		PFLU_RS14830	0.78	-1.1
3,318,754	+		PFLU_RS14830	0.78	+0.6
3,318,754	+		PFLU_RS14830	0.78	-1.6
3,318,754	+		PFLU_RS14830	0.78	+0.2
3,318,755	-		PFLU_RS14830	0.78	-1.1
3,318,755	-		PFLU_RS14830	0.78	-1.8
3,318,758	+		PFLU_RS14830	0.78	-0.7
3,318,758	+		PFLU_RS14830	0.78	-0.9
3,318,759	-		PFLU_RS14830	0.78	-0.6
3,318,759	-		PFLU_RS14830	0.78	-0.0
3,318,759	-		PFLU_RS14830	0.78	-1.6
3,318,865	+		PFLU_RS14830	0.88	+1.2
3,318,871	+		PFLU_RS14830	0.89	-1.8
3,318,872	-		PFLU_RS14830	0.89	-0.8
3,318,937	+				-0.6
3,318,937	+				+0.5