Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28575

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
6,357,400	+		PFLU_RS28570	0.32	-2.7
6,357,400	+		PFLU_RS28570	0.32	-1.9
6,357,401	-		PFLU_RS28570	0.32	+0.6
6,357,429	+		PFLU_RS28570	0.34	-0.4
6,357,429	+		PFLU_RS28570	0.34	+0.9
6,357,430	-		PFLU_RS28570	0.34	-0.3
6,357,430	-		PFLU_RS28570	0.34	-0.3
6,357,498	+		PFLU_RS28570	0.39	+1.7
6,357,498	+		PFLU_RS28570	0.39	+2.0
6,357,529	+		PFLU_RS28570	0.42	-2.6
6,357,530	-		PFLU_RS28570	0.42	+0.5
6,357,530	-		PFLU_RS28570	0.42	-1.4
6,357,530	-		PFLU_RS28570	0.42	-2.5
6,357,530	-		PFLU_RS28570	0.42	+1.5
6,357,530	-		PFLU_RS28570	0.42	+0.9
6,357,749	+		PFLU_RS28570	0.58	-0.5
6,357,750	-		PFLU_RS28570	0.58	-2.5
6,357,750	-		PFLU_RS28570	0.58	+2.4
6,357,789	+		PFLU_RS28570	0.61	+0.4
6,357,789	+		PFLU_RS28570	0.61	+0.5
6,357,790	-		PFLU_RS28570	0.61	+0.1
6,357,790	-		PFLU_RS28570	0.61	+2.0
6,357,845	+		PFLU_RS28570	0.65	-0.3
6,358,331	+				-0.8
6,358,331	+				+1.1
6,358,331	+				-0.1
6,358,332	-				+1.2
6,358,332	-				+0.8
6,358,332	-				-0.7
6,358,332	-				-1.2
6,358,332	-				-2.1
6,358,500	+		PFLU_RS28575	0.13	+0.1
6,358,500	+		PFLU_RS28575	0.13	+1.1
6,358,501	-		PFLU_RS28575	0.13	-1.7
6,358,542	+		PFLU_RS28575	0.16	-0.6
6,358,542	+		PFLU_RS28575	0.16	-0.3
6,358,686	+		PFLU_RS28575	0.26	-1.2
6,358,686	+		PFLU_RS28575	0.26	-0.9
6,358,686	+		PFLU_RS28575	0.26	-1.2
6,358,686	+		PFLU_RS28575	0.26	-1.8
6,358,686	+		PFLU_RS28575	0.26	-1.2
6,358,686	+		PFLU_RS28575	0.26	-1.7
6,358,687	-		PFLU_RS28575	0.27	-1.5
6,358,687	-		PFLU_RS28575	0.27	+1.4
6,358,687	-		PFLU_RS28575	0.27	-1.1
6,358,687	-		PFLU_RS28575	0.27	+2.7
6,358,687	-		PFLU_RS28575	0.27	-1.3
6,358,722	+		PFLU_RS28575	0.29	-1.2
6,358,722	+		PFLU_RS28575	0.29	-2.0
6,358,723	-		PFLU_RS28575	0.29	+0.9
6,358,723	-		PFLU_RS28575	0.29	-0.6
6,358,902	+		PFLU_RS28575	0.42	+2.5
6,358,902	+		PFLU_RS28575	0.42	-0.0
6,358,902	+		PFLU_RS28575	0.42	-0.6
6,358,902	+		PFLU_RS28575	0.42	+0.3
6,358,902	+		PFLU_RS28575	0.42	-0.0
6,358,902	+		PFLU_RS28575	0.42	-1.1
6,358,902	+		PFLU_RS28575	0.42	-0.7
6,358,902	+		PFLU_RS28575	0.42	+1.6
6,358,902	+		PFLU_RS28575	0.42	-0.1
6,358,902	+		PFLU_RS28575	0.42	+0.1
6,358,903	-		PFLU_RS28575	0.42	-1.2
6,358,903	-		PFLU_RS28575	0.42	-1.1
6,358,903	-		PFLU_RS28575	0.42	+0.1
6,358,903	-		PFLU_RS28575	0.42	-0.5
6,358,903	-		PFLU_RS28575	0.42	-3.0
6,358,903	-		PFLU_RS28575	0.42	-1.7
6,358,903	-		PFLU_RS28575	0.42	-1.2
6,359,102	-		PFLU_RS28575	0.57	-2.0
6,359,302	+		PFLU_RS28575	0.72	-2.2
6,359,303	-		PFLU_RS28575	0.72	+2.5
6,359,303	-		PFLU_RS28575	0.72	-2.0
6,359,382	+		PFLU_RS28575	0.78	-1.6
6,359,382	+		PFLU_RS28575	0.78	-2.2
6,359,383	-		PFLU_RS28575	0.78	-0.3
6,359,383	-		PFLU_RS28575	0.78	-2.0
6,359,705	+				-3.2
6,359,705	+				+1.5
6,359,706	-				+2.0
6,359,706	-				+1.9
6,359,707	+				+1.7
6,359,708	-				-0.0
6,359,708	-				+1.2
6,359,749	+				-0.9
6,359,749	+				+0.5
6,359,749	+				-0.9
6,359,749	+				+1.0
6,359,749	+				-0.6
6,359,749	+				-1.8
6,359,749	+				-0.4
6,359,749	+				-2.7
6,359,749	+				-0.6
6,359,749	+				-0.6
6,359,749	+				-0.1
6,359,750	-				+1.1
6,359,750	-				+2.9
6,359,750	-				+2.6
6,359,750	-				+0.8
6,359,750	-				+0.7
6,359,750	-				+1.1
6,359,750	-				-0.5
6,359,750	-				-1.4
6,359,750	-				+0.8
6,359,796	-		PFLU_RS28580	0.18	+0.7
6,359,811	-		PFLU_RS28580	0.21	+1.1
6,359,860	+		PFLU_RS28580	0.29	-1.6
6,359,861	-		PFLU_RS28580	0.30	-0.2
6,359,861	-		PFLU_RS28580	0.30	-3.1
6,359,897	+		PFLU_RS28580	0.36	-0.1
6,359,914	+		PFLU_RS28580	0.39	+2.6
6,359,914	+		PFLU_RS28580	0.39	+0.2
6,359,914	+		PFLU_RS28580	0.39	-0.2
6,359,914	+		PFLU_RS28580	0.39	-0.9
6,359,914	+		PFLU_RS28580	0.39	-1.6
6,359,914	+		PFLU_RS28580	0.39	+0.1
6,359,914	+		PFLU_RS28580	0.39	-1.7
6,359,914	+		PFLU_RS28580	0.39	-0.1
6,359,914	+		PFLU_RS28580	0.39	-1.3
6,359,914	+		PFLU_RS28580	0.39	+0.6
6,359,914	+		PFLU_RS28580	0.39	+1.7
6,359,914	+		PFLU_RS28580	0.39	-1.0
6,359,914	+		PFLU_RS28580	0.39	-0.7
6,359,915	-		PFLU_RS28580	0.39	-1.3
6,359,915	-		PFLU_RS28580	0.39	-1.1
6,359,915	-		PFLU_RS28580	0.39	+1.5
6,359,915	-		PFLU_RS28580	0.39	+1.2
6,359,915	-		PFLU_RS28580	0.39	-2.0
6,359,915	-		PFLU_RS28580	0.39	-0.3
6,359,915	-		PFLU_RS28580	0.39	-3.0
6,359,951	+		PFLU_RS28580	0.46	-1.9
6,359,951	+		PFLU_RS28580	0.46	+0.1
6,359,951	+		PFLU_RS28580	0.46	-1.5
6,359,952	-		PFLU_RS28580	0.46	+0.5
6,359,952	-		PFLU_RS28580	0.46	+0.5
6,359,952	-		PFLU_RS28580	0.46	-2.3
6,359,952	-		PFLU_RS28580	0.46	+2.4
6,359,972	+		PFLU_RS28580	0.49	+0.7
6,359,972	+		PFLU_RS28580	0.49	-1.9
6,359,973	-		PFLU_RS28580	0.49	-1.1
6,359,973	-		PFLU_RS28580	0.49	-1.9
6,359,973	-		PFLU_RS28580	0.49	+0.8
6,359,973	-		PFLU_RS28580	0.49	-1.4
6,359,973	-		PFLU_RS28580	0.49	-1.2
6,359,973	-		PFLU_RS28580	0.49	-1.2
6,359,973	-		PFLU_RS28580	0.49	-1.5
6,359,973	-		PFLU_RS28580	0.49	-1.9
6,359,973	-		PFLU_RS28580	0.49	+1.0
6,359,973	-		PFLU_RS28580	0.49	+1.3
6,359,973	-		PFLU_RS28580	0.49	-2.6
6,359,973	-		PFLU_RS28580	0.49	-0.9
6,359,978	+		PFLU_RS28580	0.50	-2.0
6,359,978	+		PFLU_RS28580	0.50	+1.2
6,359,978	+		PFLU_RS28580	0.50	-1.9
6,359,978	+		PFLU_RS28580	0.50	+1.0
6,359,978	+		PFLU_RS28580	0.50	-2.9
6,359,978	+		PFLU_RS28580	0.50	-0.5
6,359,978	+		PFLU_RS28580	0.50	+0.0
6,359,978	+		PFLU_RS28580	0.50	+0.2
6,359,978	+		PFLU_RS28580	0.50	-2.1
6,359,978	+		PFLU_RS28580	0.50	-1.6
6,359,978	+		PFLU_RS28580	0.50	+0.0
6,359,978	+		PFLU_RS28580	0.50	-1.9
6,359,978	+		PFLU_RS28580	0.50	+0.9
6,359,978	+		PFLU_RS28580	0.50	+1.1
6,359,978	+		PFLU_RS28580	0.50	-2.2
6,359,978	+		PFLU_RS28580	0.50	+2.1
6,359,978	+		PFLU_RS28580	0.50	+0.1
6,359,978	+		PFLU_RS28580	0.50	-1.9
6,359,978	+		PFLU_RS28580	0.50	+1.5
6,359,978	+		PFLU_RS28580	0.50	-2.0
6,359,978	+		PFLU_RS28580	0.50	+1.1
6,359,978	+		PFLU_RS28580	0.50	-1.2
6,359,978	+		PFLU_RS28580	0.50	-0.9
6,359,978	+		PFLU_RS28580	0.50	+0.1
6,359,978	+		PFLU_RS28580	0.50	+3.4
6,359,978	+		PFLU_RS28580	0.50	-0.7
6,359,978	+		PFLU_RS28580	0.50	+0.9
6,359,978	+		PFLU_RS28580	0.50	+0.5
6,359,978	+		PFLU_RS28580	0.50	-0.2
6,359,978	+		PFLU_RS28580	0.50	+1.7
6,359,978	+		PFLU_RS28580	0.50	+1.0
6,359,978	+		PFLU_RS28580	0.50	+1.3
6,359,978	+		PFLU_RS28580	0.50	-2.6
6,359,978	+		PFLU_RS28580	0.50	-1.9
6,359,978	+		PFLU_RS28580	0.50	+2.5
6,359,978	+		PFLU_RS28580	0.50	-0.1
6,359,978	+		PFLU_RS28580	0.50	+0.8
6,359,978	+		PFLU_RS28580	0.50	-1.1
6,359,978	+		PFLU_RS28580	0.50	-2.4
6,359,978	+		PFLU_RS28580	0.50	-1.5
6,359,978	+		PFLU_RS28580	0.50	-1.7
6,359,978	+		PFLU_RS28580	0.50	-3.1
6,359,979	-		PFLU_RS28580	0.51	-0.7
6,359,979	-		PFLU_RS28580	0.51	-1.8
6,359,979	-		PFLU_RS28580	0.51	-0.4
6,359,979	-		PFLU_RS28580	0.51	+0.6
6,359,979	-		PFLU_RS28580	0.51	+0.5
6,359,979	-		PFLU_RS28580	0.51	-0.6
6,359,979	-		PFLU_RS28580	0.51	+0.1
6,359,979	-		PFLU_RS28580	0.51	+2.4
6,359,979	-		PFLU_RS28580	0.51	-1.5
6,359,979	-		PFLU_RS28580	0.51	-2.8
6,359,979	-		PFLU_RS28580	0.51	+1.7
6,359,979	-		PFLU_RS28580	0.51	+1.1
6,359,979	-		PFLU_RS28580	0.51	+0.3
6,359,979	-		PFLU_RS28580	0.51	+0.9
6,359,979	-		PFLU_RS28580	0.51	+1.0
6,359,979	-		PFLU_RS28580	0.51	+1.0
6,359,979	-		PFLU_RS28580	0.51	+3.3
6,359,979	-		PFLU_RS28580	0.51	-0.8
6,359,979	-		PFLU_RS28580	0.51	-0.0
6,359,979	-		PFLU_RS28580	0.51	-0.1
6,359,979	-		PFLU_RS28580	0.51	+0.3
6,359,979	-		PFLU_RS28580	0.51	-1.3
6,359,979	-		PFLU_RS28580	0.51	+0.3
6,359,979	-		PFLU_RS28580	0.51	+0.8
6,359,979	-		PFLU_RS28580	0.51	+0.5
6,359,979	-		PFLU_RS28580	0.51	-1.8
6,359,979	-		PFLU_RS28580	0.51	-0.1
6,359,979	-		PFLU_RS28580	0.51	-1.7
6,359,979	-		PFLU_RS28580	0.51	-1.4
6,359,979	-		PFLU_RS28580	0.51	+2.6
6,359,979	-		PFLU_RS28580	0.51	-1.0
6,359,979	-		PFLU_RS28580	0.51	+0.8
6,359,979	-		PFLU_RS28580	0.51	-0.3
6,359,979	-		PFLU_RS28580	0.51	+2.5
6,359,979	-		PFLU_RS28580	0.51	+1.9
6,359,979	-		PFLU_RS28580	0.51	-1.0
6,359,979	-		PFLU_RS28580	0.51	+1.5
6,359,979	-		PFLU_RS28580	0.51	+0.1
6,359,979	-		PFLU_RS28580	0.51	-1.3
6,359,979	-		PFLU_RS28580	0.51	-1.6
6,359,980	+		PFLU_RS28580	0.51	+1.2
6,359,980	+		PFLU_RS28580	0.51	-0.6
6,359,980	+		PFLU_RS28580	0.51	-1.3
6,359,980	+		PFLU_RS28580	0.51	-0.3
6,359,980	+		PFLU_RS28580	0.51	-1.1
6,359,980	+		PFLU_RS28580	0.51	-1.9
6,359,980	+		PFLU_RS28580	0.51	+2.1
6,359,980	+		PFLU_RS28580	0.51	-0.2
6,359,980	+		PFLU_RS28580	0.51	-1.3
6,359,980	+		PFLU_RS28580	0.51	+0.9
6,359,980	+		PFLU_RS28580	0.51	+1.0
6,359,980	+		PFLU_RS28580	0.51	+0.6
6,359,981	-		PFLU_RS28580	0.51	-0.7
6,359,981	-		PFLU_RS28580	0.51	-1.0
6,359,981	-		PFLU_RS28580	0.51	-0.9
6,359,981	-		PFLU_RS28580	0.51	+0.7
6,359,981	-		PFLU_RS28580	0.51	-0.5
6,359,981	-		PFLU_RS28580	0.51	+1.1
6,359,981	-		PFLU_RS28580	0.51	-0.3
6,359,981	-		PFLU_RS28580	0.51	-1.0
6,359,981	-		PFLU_RS28580	0.51	+0.1
6,359,981	-		PFLU_RS28580	0.51	+0.6
6,359,981	-		PFLU_RS28580	0.51	-1.6
6,359,981	-		PFLU_RS28580	0.51	-0.1
6,359,981	-		PFLU_RS28580	0.51	-0.6
6,360,014	+		PFLU_RS28580	0.57	+1.6
6,360,025	+		PFLU_RS28580	0.59	+0.5
6,360,065	+		PFLU_RS28580	0.66	+0.5
6,360,066	-		PFLU_RS28580	0.66	-0.3
6,360,066	-		PFLU_RS28580	0.66	-0.9
6,360,080	+		PFLU_RS28580	0.68	-1.3
6,360,080	+		PFLU_RS28580	0.68	+0.2
6,360,080	+		PFLU_RS28580	0.68	+1.7
6,360,081	-		PFLU_RS28580	0.69	+1.4
6,360,081	-		PFLU_RS28580	0.69	+0.0
6,360,081	-		PFLU_RS28580	0.69	+0.7
6,360,081	-		PFLU_RS28580	0.69	+1.7
6,360,081	-		PFLU_RS28580	0.69	+0.1
6,360,129	-		PFLU_RS28580	0.77	+1.6
6,360,129	-		PFLU_RS28580	0.77	-1.9
6,360,129	-		PFLU_RS28580	0.77	+1.0
6,360,140	-		PFLU_RS28580	0.79	+0.5
6,360,149	+		PFLU_RS28580	0.81	+2.5
6,360,149	+		PFLU_RS28580	0.81	+0.8
6,360,149	+		PFLU_RS28580	0.81	+0.6
6,360,149	+		PFLU_RS28580	0.81	+0.9
6,360,150	-		PFLU_RS28580	0.81	-1.6
6,360,150	-		PFLU_RS28580	0.81	+1.5
6,360,150	-		PFLU_RS28580	0.81	+3.2
6,360,150	-		PFLU_RS28580	0.81	-1.3
6,360,150	-		PFLU_RS28580	0.81	-1.1
6,360,150	-		PFLU_RS28580	0.81	-1.3
6,360,150	-		PFLU_RS28580	0.81	-1.6
6,360,150	-		PFLU_RS28580	0.81	-1.8
6,360,203	+				+2.1
6,360,203	+				-1.6
6,360,203	+				-0.7
6,360,204	-				+0.2
6,360,220	+				+0.8
6,360,220	+				-2.9
6,360,220	+				-1.3
6,360,220	+				+2.1
6,360,220	+				+0.5
6,360,221	-				+1.5
6,360,221	-				+1.8
6,360,221	-				+0.8
6,360,221	-				-0.9
6,360,221	-				-2.1
6,360,221	-				-2.4
6,360,221	-				-0.3
6,360,246	+				-1.3
6,360,246	+				+1.4
6,360,247	-				-0.5
6,360,250	+				-2.1
6,360,250	+				+0.5
6,360,250	+				+2.2
6,360,250	+				-0.5
6,360,250	+				+1.1
6,360,251	-				-1.8
6,360,251	-				+0.4
6,360,251	-				+0.4
6,360,251	-				-1.4
6,360,251	-				-1.9
6,360,251	-				+1.1
6,360,251	-				+2.7
6,360,272	+				-0.7
6,360,273	-				-0.8
6,360,273	-				-0.2
6,360,306	+				-1.2
6,360,306	+				-1.1
6,360,306	+				-2.0
6,360,306	+				-2.3
6,360,306	+				-1.7
6,360,307	-				+0.9
6,360,307	-				+1.2
6,360,307	-				+1.8
6,360,307	-				-2.1
6,360,307	-				+0.9
6,360,313	+				-2.4
6,360,313	+				+0.1
6,360,313	+				+1.3
6,360,313	+				-0.4
6,360,313	+				-0.1
6,360,313	+				+0.6
6,360,314	-				-0.8
6,360,314	-				+0.7
6,360,314	-				+2.3
6,360,346	+				-1.8
6,360,346	+				-3.0
6,360,346	+				-0.5
6,360,346	+				-1.1
6,360,347	-				+0.6
6,360,347	-				+1.6
6,360,347	-				+1.9
6,360,347	-				+0.5
6,360,347	-				-0.9
6,360,347	-				+0.9
6,360,347	-				+0.1
6,360,347	-				-2.0
6,360,347	-				-1.1
6,360,370	+				-1.9
6,360,370	+				-2.7
6,360,370	+				-2.9
6,360,371	-				+1.5
6,360,371	-				+0.5
6,360,453	+				-2.7
6,360,453	+				-0.4
6,360,453	+				-0.5
6,360,453	+				-1.5
6,360,454	-				-1.5
6,360,454	-				+0.4
6,360,565	+		PFLU_RS28585	0.30	+2.5
6,360,565	+		PFLU_RS28585	0.30	+0.6
6,360,576	-		PFLU_RS28585	0.32	+1.2
6,360,604	+		PFLU_RS28585	0.37	+0.8
6,360,604	+		PFLU_RS28585	0.37	+4.8
6,360,604	+		PFLU_RS28585	0.37	+3.4
6,360,604	+		PFLU_RS28585	0.37	+1.4
6,360,604	+		PFLU_RS28585	0.37	-0.5
6,360,605	-		PFLU_RS28585	0.37	+1.0
6,360,607	+		PFLU_RS28585	0.38	-1.9
6,360,607	+		PFLU_RS28585	0.38	+1.6
6,360,608	-		PFLU_RS28585	0.38	-1.4
6,360,631	+		PFLU_RS28585	0.42	+0.4
6,360,631	+		PFLU_RS28585	0.42	-0.3
6,360,631	+		PFLU_RS28585	0.42	+1.4
6,360,631	+		PFLU_RS28585	0.42	-1.2
6,360,631	+		PFLU_RS28585	0.42	-1.7
6,360,632	-		PFLU_RS28585	0.42	+2.0
6,360,645	+		PFLU_RS28585	0.45	+1.1
6,360,646	-		PFLU_RS28585	0.45	-1.7
6,360,646	-		PFLU_RS28585	0.45	-0.7
6,360,653	-		PFLU_RS28585	0.46	+3.6