Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS28290

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
6,297,488	+				+2.0
6,297,488	+				-0.2
6,297,489	-				-1.9
6,297,489	-				+3.5
6,297,489	-				+1.5
6,297,494	-				+0.8
6,297,508	-				+1.2
6,297,508	-				-2.0
6,297,508	-				-0.4
6,297,515	-				+0.1
6,297,515	-				-1.1
6,297,515	-				+1.0
6,297,515	-				-0.7
6,297,515	-				-2.0
6,297,515	-				+0.9
6,297,515	-				+1.5
6,297,515	-				-0.8
6,297,524	-				+0.7
6,297,567	+				-1.6
6,297,567	+				+3.1
6,297,567	+				+3.1
6,297,567	+				-0.7
6,297,582	+				-0.3
6,297,582	+				+0.8
6,297,582	+				+0.8
6,297,603	+				-3.1
6,297,603	+				+0.1
6,297,603	+				+1.9
6,297,603	+				-1.2
6,297,604	-				-2.7
6,297,633	+				-1.1
6,297,634	-				-2.2
6,297,733	+		PFLU_RS28285	0.42	-2.4
6,297,734	-		PFLU_RS28285	0.42	-1.8
6,297,753	-		PFLU_RS28285	0.50	+0.9
6,297,753	-		PFLU_RS28285	0.50	+1.1
6,297,753	-		PFLU_RS28285	0.50	-2.4
6,297,834	-		PFLU_RS28285	0.84	-1.4
6,297,859	+				-0.1
6,297,860	-				+2.8
6,297,876	+				-0.0
6,297,876	+				-0.7
6,297,876	+				-0.7
6,297,876	+				+1.2
6,297,876	+				+0.7
6,297,877	-				-1.3
6,297,877	-				-0.7
6,297,877	-				-1.0
6,297,877	-				-2.7
6,297,877	-				-1.4
6,297,877	-				-1.9
6,297,926	+				+2.7
6,297,926	+				-1.7
6,297,926	+				+0.4
6,297,926	+				+1.0
6,297,926	+				-0.2
6,297,927	-				+2.0
6,297,927	-				+1.5
6,297,927	-				+0.5
6,297,927	-				-3.2
6,297,927	-				+1.4
6,297,964	+				-1.6
6,297,964	+				+0.8
6,297,964	+				-1.5
6,297,965	-				-1.2
6,298,011	+				+1.5
6,298,018	+				+0.8
6,298,018	+				+2.3
6,298,018	+				-1.1
6,298,018	+				-1.4
6,298,018	+				-4.0
6,298,018	+				-2.9
6,298,018	+				-3.9
6,298,019	-				-0.3
6,298,019	-				-2.0
6,298,019	-				-0.7
6,298,019	-				+0.4
6,298,019	-				-1.2
6,298,029	+				-1.3
6,298,029	+				+1.5
6,298,029	+				+2.1
6,298,030	-				-3.0
6,298,050	+				+2.7
6,298,051	-				-0.0
6,298,074	+				-1.8
6,298,074	+				+0.6
6,298,074	+				-2.2
6,298,075	-				-0.7
6,298,075	-				+3.3
6,298,075	-				+2.4
6,298,075	-				-2.2
6,298,127	+				-2.2
6,298,128	-				+2.2
6,298,255	+		PFLU_RS31840	0.40	+1.7
6,298,255	+		PFLU_RS31840	0.40	+1.2
6,298,365	+				-0.9
6,298,365	+				-1.4
6,298,382	+				-0.8
6,298,428	-				+3.3
6,298,428	-				-0.3
6,298,494	-		PFLU_RS28290	0.16	-1.1
6,298,539	+		PFLU_RS28290	0.26	-0.7
6,298,539	+		PFLU_RS28290	0.26	+0.6
6,298,539	+		PFLU_RS28290	0.26	+1.4
6,298,539	+		PFLU_RS28290	0.26	+2.5
6,298,540	-		PFLU_RS28290	0.26	-2.1
6,298,540	-		PFLU_RS28290	0.26	+0.5
6,298,540	-		PFLU_RS28290	0.26	+2.8
6,298,540	-		PFLU_RS28290	0.26	+1.9
6,298,540	-		PFLU_RS28290	0.26	+2.3
6,298,540	-		PFLU_RS28290	0.26	+2.0
6,298,540	-		PFLU_RS28290	0.26	-1.0
6,298,540	-		PFLU_RS28290	0.26	+1.4
6,298,563	+		PFLU_RS28290	0.31	+1.5
6,298,563	+		PFLU_RS28290	0.31	+2.3
6,298,563	+		PFLU_RS28290	0.31	+1.8
6,298,563	+		PFLU_RS28290	0.31	+2.2
6,298,563	+		PFLU_RS28290	0.31	-0.3
6,298,563	+		PFLU_RS28290	0.31	+1.8
6,298,564	-		PFLU_RS28290	0.31	+0.4
6,298,564	-		PFLU_RS28290	0.31	+1.3
6,298,564	-		PFLU_RS28290	0.31	+1.7
6,298,564	-		PFLU_RS28290	0.31	+2.1
6,298,564	-		PFLU_RS28290	0.31	+2.7
6,298,564	-		PFLU_RS28290	0.31	+1.3
6,298,564	-		PFLU_RS28290	0.31	+2.6
6,298,564	-		PFLU_RS28290	0.31	-0.4
6,298,564	-		PFLU_RS28290	0.31	+2.0
6,298,564	-		PFLU_RS28290	0.31	+3.9
6,298,564	-		PFLU_RS28290	0.31	+0.0
6,298,598	-		PFLU_RS28290	0.39	+2.8
6,298,637	+		PFLU_RS28290	0.47	+1.7
6,298,637	+		PFLU_RS28290	0.47	+1.1
6,298,637	+		PFLU_RS28290	0.47	+1.9
6,298,638	-		PFLU_RS28290	0.48	+0.9
6,298,638	-		PFLU_RS28290	0.48	-0.9
6,298,724	+		PFLU_RS28290	0.66	+1.8
6,298,724	+		PFLU_RS28290	0.66	+3.9
6,298,724	+		PFLU_RS28290	0.66	+1.6
6,298,725	-		PFLU_RS28290	0.67	+3.2
6,298,725	-		PFLU_RS28290	0.67	-0.4
6,298,725	-		PFLU_RS28290	0.67	-1.2
6,298,725	-		PFLU_RS28290	0.67	+1.1
6,298,737	+		PFLU_RS28290	0.69	+2.5
6,298,737	+		PFLU_RS28290	0.69	+3.5
6,298,737	+		PFLU_RS28290	0.69	-1.1
6,298,737	+		PFLU_RS28290	0.69	-0.2
6,298,738	-		PFLU_RS28290	0.70	+3.4
6,298,738	-		PFLU_RS28290	0.70	+1.8
6,298,939	+				+0.1
6,298,939	+				+1.1
6,298,940	-				+1.0
6,298,940	-				+1.5
6,299,346	+				+2.5
6,299,347	-				+2.3
6,299,490	+		PFLU_RS28295	0.11	+2.3
6,299,490	+		PFLU_RS28295	0.11	-1.0
6,299,491	-		PFLU_RS28295	0.11	+2.3
6,299,491	-		PFLU_RS28295	0.11	+1.1
6,299,491	-		PFLU_RS28295	0.11	-0.1
6,299,491	-		PFLU_RS28295	0.11	+0.1
6,299,491	-		PFLU_RS28295	0.11	+1.1
6,299,491	-		PFLU_RS28295	0.11	+2.8
6,299,510	-		PFLU_RS28295	0.11	+1.9
6,299,510	-		PFLU_RS28295	0.11	+1.6
6,299,560	+		PFLU_RS28295	0.12	+1.5
6,299,560	+		PFLU_RS28295	0.12	+0.4
6,299,560	+		PFLU_RS28295	0.12	+1.6
6,299,561	-		PFLU_RS28295	0.12	-0.1
6,299,572	+		PFLU_RS28295	0.12	+0.9
6,299,573	-		PFLU_RS28295	0.12	-0.5
6,299,573	-		PFLU_RS28295	0.12	+2.5
6,299,587	+		PFLU_RS28295	0.12	-0.1
6,299,593	+		PFLU_RS28295	0.12	+1.8
6,299,593	+		PFLU_RS28295	0.12	-1.5
6,299,593	+		PFLU_RS28295	0.12	+1.5
6,299,593	+		PFLU_RS28295	0.12	+2.1
6,299,593	+		PFLU_RS28295	0.12	-1.9
6,299,593	+		PFLU_RS28295	0.12	-0.3
6,299,594	-		PFLU_RS28295	0.12	+1.9
6,299,594	-		PFLU_RS28295	0.12	+0.7
6,299,594	-		PFLU_RS28295	0.12	+0.5
6,299,594	-		PFLU_RS28295	0.12	+1.6
6,299,614	+		PFLU_RS28295	0.13	-0.9