Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS24145

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
5,402,417	+		PFLU_RS24140	0.44	-1.3
5,402,417	+		PFLU_RS24140	0.44	+0.7
5,402,428	+		PFLU_RS24140	0.44	-0.2
5,402,429	-		PFLU_RS24140	0.45	-0.2
5,402,493	-		PFLU_RS24140	0.49	+1.5
5,402,525	+		PFLU_RS24140	0.52	-1.5
5,402,525	+		PFLU_RS24140	0.52	+1.9
5,402,525	+		PFLU_RS24140	0.52	-0.2
5,402,525	+		PFLU_RS24140	0.52	-1.5
5,402,525	+		PFLU_RS24140	0.52	-0.7
5,402,526	-		PFLU_RS24140	0.52	-1.5
5,402,526	-		PFLU_RS24140	0.52	-1.5
5,402,526	-		PFLU_RS24140	0.52	-2.3
5,402,526	-		PFLU_RS24140	0.52	-2.1
5,402,526	-		PFLU_RS24140	0.52	-2.5
5,402,528	+		PFLU_RS24140	0.52	-0.7
5,402,528	+		PFLU_RS24140	0.52	+1.7
5,402,528	+		PFLU_RS24140	0.52	-1.2
5,402,528	+		PFLU_RS24140	0.52	-0.2
5,402,529	-		PFLU_RS24140	0.52	-1.2
5,402,529	-		PFLU_RS24140	0.52	-0.9
5,402,529	-		PFLU_RS24140	0.52	+1.6
5,402,529	-		PFLU_RS24140	0.52	+1.7
5,402,529	-		PFLU_RS24140	0.52	+0.3
5,402,529	-		PFLU_RS24140	0.52	+0.1
5,402,546	+		PFLU_RS24140	0.54	+1.0
5,402,546	+		PFLU_RS24140	0.54	+1.7
5,402,546	+		PFLU_RS24140	0.54	-2.8
5,402,547	-		PFLU_RS24140	0.54	+0.5
5,402,547	-		PFLU_RS24140	0.54	+1.6
5,402,547	-		PFLU_RS24140	0.54	+0.1
5,402,547	-		PFLU_RS24140	0.54	-1.6
5,402,561	+		PFLU_RS24140	0.55	+0.6
5,402,561	+		PFLU_RS24140	0.55	-2.1
5,402,562	-		PFLU_RS24140	0.55	-1.8
5,402,562	-		PFLU_RS24140	0.55	+0.5
5,402,590	+		PFLU_RS24140	0.57	-1.2
5,402,590	+		PFLU_RS24140	0.57	-0.8
5,402,590	+		PFLU_RS24140	0.57	-0.2
5,402,591	-		PFLU_RS24140	0.57	+1.3
5,402,591	-		PFLU_RS24140	0.57	-1.7
5,402,591	-		PFLU_RS24140	0.57	+0.3
5,402,591	-		PFLU_RS24140	0.57	-1.6
5,402,627	+		PFLU_RS24140	0.60	+1.5
5,402,627	+		PFLU_RS24140	0.60	-0.3
5,402,627	+		PFLU_RS24140	0.60	-1.0
5,402,627	+		PFLU_RS24140	0.60	-0.9
5,402,627	+		PFLU_RS24140	0.60	+0.1
5,402,627	+		PFLU_RS24140	0.60	-1.9
5,402,627	+		PFLU_RS24140	0.60	+0.5
5,402,627	+		PFLU_RS24140	0.60	+1.6
5,402,627	+		PFLU_RS24140	0.60	-0.9
5,402,628	-		PFLU_RS24140	0.60	-2.8
5,402,628	-		PFLU_RS24140	0.60	-1.9
5,402,628	-		PFLU_RS24140	0.60	-0.7
5,402,628	-		PFLU_RS24140	0.60	+0.9
5,402,628	-		PFLU_RS24140	0.60	+5.0
5,402,628	-		PFLU_RS24140	0.60	+1.1
5,402,628	-		PFLU_RS24140	0.60	+0.1
5,402,628	-		PFLU_RS24140	0.60	-1.3
5,402,628	-		PFLU_RS24140	0.60	+1.1
5,402,628	-		PFLU_RS24140	0.60	-2.4
5,402,628	-		PFLU_RS24140	0.60	-2.3
5,402,658	+		PFLU_RS24140	0.62	+0.1
5,402,658	+		PFLU_RS24140	0.62	+0.2
5,402,658	+		PFLU_RS24140	0.62	-0.2
5,402,658	+		PFLU_RS24140	0.62	-0.0
5,402,658	+		PFLU_RS24140	0.62	+0.1
5,402,658	+		PFLU_RS24140	0.62	-1.6
5,402,658	+		PFLU_RS24140	0.62	+1.2
5,402,658	+		PFLU_RS24140	0.62	+0.1
5,402,658	+		PFLU_RS24140	0.62	-2.4
5,402,659	-		PFLU_RS24140	0.62	-1.3
5,402,659	-		PFLU_RS24140	0.62	+0.3
5,402,659	-		PFLU_RS24140	0.62	+0.3
5,402,659	-		PFLU_RS24140	0.62	+0.7
5,402,659	-		PFLU_RS24140	0.62	+1.2
5,402,659	-		PFLU_RS24140	0.62	-2.5
5,402,659	-		PFLU_RS24140	0.62	+1.5
5,402,659	-		PFLU_RS24140	0.62	+1.6
5,402,659	-		PFLU_RS24140	0.62	-1.8
5,402,659	-		PFLU_RS24140	0.62	+2.4
5,402,720	+		PFLU_RS24140	0.67	-0.5
5,402,720	+		PFLU_RS24140	0.67	-2.6
5,402,720	+		PFLU_RS24140	0.67	-1.3
5,402,720	+		PFLU_RS24140	0.67	-1.6
5,402,720	+		PFLU_RS24140	0.67	-0.5
5,402,720	+		PFLU_RS24140	0.67	+1.1
5,402,720	+		PFLU_RS24140	0.67	-0.9
5,402,720	+		PFLU_RS24140	0.67	-0.4
5,402,720	+		PFLU_RS24140	0.67	-3.0
5,402,721	-		PFLU_RS24140	0.67	+0.9
5,402,721	-		PFLU_RS24140	0.67	-1.0
5,402,721	-		PFLU_RS24140	0.67	-0.2
5,402,721	-		PFLU_RS24140	0.67	-1.1
5,402,721	-		PFLU_RS24140	0.67	-0.2
5,402,721	-		PFLU_RS24140	0.67	-1.6
5,402,780	+		PFLU_RS24140	0.72	-3.0
5,402,781	-		PFLU_RS24140	0.72	-0.9
5,402,781	-		PFLU_RS24140	0.72	+2.4
5,402,781	-		PFLU_RS24140	0.72	-2.2
5,402,786	+		PFLU_RS24140	0.72	-0.6
5,402,786	+		PFLU_RS24140	0.72	+0.9
5,402,787	-		PFLU_RS24140	0.72	+0.2
5,402,794	-		PFLU_RS24140	0.73	-1.5
5,402,794	-		PFLU_RS24140	0.73	-1.0
5,402,794	-		PFLU_RS24140	0.73	-2.9
5,402,867	+		PFLU_RS24140	0.78	-3.0
5,402,867	+		PFLU_RS24140	0.78	+0.5
5,402,867	+		PFLU_RS24140	0.78	-0.3
5,402,867	+		PFLU_RS24140	0.78	-1.3
5,402,867	+		PFLU_RS24140	0.78	-1.0
5,402,867	+		PFLU_RS24140	0.78	+2.1
5,402,868	-		PFLU_RS24140	0.78	-0.5
5,402,868	-		PFLU_RS24140	0.78	+1.0
5,402,879	+		PFLU_RS24140	0.79	+2.3
5,402,879	+		PFLU_RS24140	0.79	+1.0
5,402,879	+		PFLU_RS24140	0.79	-0.7
5,402,880	-		PFLU_RS24140	0.79	+0.5
5,402,880	-		PFLU_RS24140	0.79	+0.5
5,402,933	+		PFLU_RS24140	0.84	-1.2
5,402,933	+		PFLU_RS24140	0.84	-0.8
5,402,933	+		PFLU_RS24140	0.84	-1.7
5,402,933	+		PFLU_RS24140	0.84	-1.5
5,402,933	+		PFLU_RS24140	0.84	-0.9
5,402,933	+		PFLU_RS24140	0.84	-0.2
5,402,934	-		PFLU_RS24140	0.84	-1.3
5,402,934	-		PFLU_RS24140	0.84	+2.2
5,402,934	-		PFLU_RS24140	0.84	-1.3
5,402,934	-		PFLU_RS24140	0.84	+0.3
5,402,934	-		PFLU_RS24140	0.84	+3.1
5,402,934	-		PFLU_RS24140	0.84	+2.1
5,402,934	-		PFLU_RS24140	0.84	+0.7
5,402,962	+		PFLU_RS24140	0.86	+1.0
5,402,962	+		PFLU_RS24140	0.86	-1.3
5,402,962	+		PFLU_RS24140	0.86	+1.9
5,402,962	+		PFLU_RS24140	0.86	-1.6
5,402,962	+		PFLU_RS24140	0.86	-0.2
5,402,963	-		PFLU_RS24140	0.86	+2.0
5,402,963	-		PFLU_RS24140	0.86	+0.1
5,402,968	+		PFLU_RS24140	0.86	-1.9
5,402,968	+		PFLU_RS24140	0.86	+0.7
5,402,968	+		PFLU_RS24140	0.86	+0.8
5,403,008	+		PFLU_RS24140	0.89	-2.0
5,403,008	+		PFLU_RS24140	0.89	-2.3
5,403,008	+		PFLU_RS24140	0.89	-0.7
5,403,008	+		PFLU_RS24140	0.89	+1.6
5,403,008	+		PFLU_RS24140	0.89	-2.0
5,403,009	-		PFLU_RS24140	0.89	-1.9
5,403,009	-		PFLU_RS24140	0.89	-0.9
5,403,009	-		PFLU_RS24140	0.89	-2.3
5,403,009	-		PFLU_RS24140	0.89	-1.6
5,403,009	-		PFLU_RS24140	0.89	-1.0
5,403,009	-		PFLU_RS24140	0.89	-2.1
5,403,051	+				+1.1
5,403,051	+				-1.9
5,403,051	+				-2.3
5,403,051	+				+0.9
5,403,052	-				+1.1
5,403,052	-				-2.5
5,403,052	-				+0.1
5,403,065	+				-1.5
5,403,065	+				+0.5
5,403,065	+				-2.1
5,403,065	+				-3.0
5,403,065	+				+2.6
5,403,066	-				-1.8
5,403,066	-				-0.2
5,403,066	-				+0.8
5,403,066	-				-0.5
5,403,066	-				-0.9
5,403,066	-				+0.5
5,403,140	-				-0.4
5,403,143	+				-0.3
5,403,144	-				+0.1
5,403,159	+				-0.5
5,403,159	+				-0.2
5,403,159	+				-2.2
5,403,160	-				-2.0
5,403,186	+				-0.2
5,403,186	+				+0.6
5,403,211	-				-0.7
5,403,261	+				+2.1
5,403,307	+				+0.1
5,403,307	+				+0.1
5,403,308	-				-0.7
5,403,327	-				+1.5
5,403,340	-				+1.2
5,403,392	-				-0.2
5,403,439	+		PFLU_RS24145	0.12	-2.3
5,403,489	-		PFLU_RS24145	0.18	-1.6
5,403,609	+		PFLU_RS24145	0.32	+2.0
5,403,609	+		PFLU_RS24145	0.32	-1.5
5,403,609	+		PFLU_RS24145	0.32	-1.2
5,403,609	+		PFLU_RS24145	0.32	+2.1
5,403,722	-		PFLU_RS24145	0.46	+0.1
5,403,982	+		PFLU_RS24145	0.76	+0.9
5,403,983	-		PFLU_RS24145	0.77	+0.5
5,404,012	+		PFLU_RS24145	0.80	+1.1
5,404,013	-		PFLU_RS24145	0.80	-1.0
5,404,013	-		PFLU_RS24145	0.80	-0.5
5,404,013	-		PFLU_RS24145	0.80	+0.3
5,404,013	-		PFLU_RS24145	0.80	-1.3
5,404,034	+		PFLU_RS24145	0.83	-0.4
5,404,110	+				-0.5
5,404,110	+				+2.9
5,404,111	-				-0.5
5,404,111	-				-1.3
5,404,182	+				+0.5
5,404,182	+				+0.5
5,404,182	+				+0.0
5,404,182	+				-0.9
5,404,182	+				-2.6
5,404,182	+				+4.2
5,404,182	+				+0.2
5,404,182	+				-2.1
5,404,182	+				-1.4
5,404,182	+				-1.2
5,404,182	+				-0.9
5,404,182	+				-0.6
5,404,182	+				-2.4
5,404,182	+				+1.5
5,404,182	+				-0.9
5,404,182	+				+0.1
5,404,182	+				+0.1
5,404,182	+				-2.1
5,404,182	+				+0.1
5,404,182	+				+2.0
5,404,182	+				-0.9
5,404,183	-				+2.1
5,404,183	-				+1.7
5,404,183	-				-0.2
5,404,183	-				+0.1
5,404,183	-				-1.2
5,404,183	-				-1.9
5,404,183	-				-0.3
5,404,183	-				-2.2
5,404,183	-				-3.0
5,404,183	-				-1.8
5,404,183	-				+0.9
5,404,183	-				-2.0
5,404,183	-				-1.5
5,404,183	-				-2.0
5,404,183	-				-1.4
5,404,183	-				+0.2
5,404,183	-				+2.0
5,404,183	-				-2.1
5,404,183	-				+0.7
5,404,212	+				+0.5
5,404,212	+				+0.9
5,404,212	+				-2.8
5,404,212	+				-2.1
5,404,212	+				-0.9
5,404,212	+				-0.0
5,404,212	+				+0.3
5,404,213	-				-2.0
5,404,213	-				-0.5
5,404,213	-				+0.8
5,404,213	-				-2.5
5,404,213	-				+0.7
5,404,225	+				-2.1
5,404,225	+				-0.7
5,404,225	+				-2.6
5,404,226	-				+2.1
5,404,226	-				+2.0
5,404,330	+				+2.1
5,404,331	-				+1.1
5,404,331	-				+1.0
5,404,414	+		PFLU_RS24150	0.20	-0.1
5,404,415	-		PFLU_RS24150	0.20	-1.0
5,404,415	-		PFLU_RS24150	0.20	-0.1
5,404,415	-		PFLU_RS24150	0.20	+1.0
5,404,504	+		PFLU_RS24150	0.39	+1.9
5,404,504	+		PFLU_RS24150	0.39	-0.3
5,404,504	+		PFLU_RS24150	0.39	+2.6
5,404,504	+		PFLU_RS24150	0.39	-3.1
5,404,551	+		PFLU_RS24150	0.48	-1.8
5,404,551	+		PFLU_RS24150	0.48	+0.7
5,404,551	+		PFLU_RS24150	0.48	-2.5
5,404,551	+		PFLU_RS24150	0.48	-0.8
5,404,551	+		PFLU_RS24150	0.48	-0.7
5,404,713	+		PFLU_RS24150	0.82	+1.8
5,404,714	-		PFLU_RS24150	0.82	+0.4
5,404,714	-		PFLU_RS24150	0.82	-0.7
5,404,815	+				-1.3
5,404,815	+				-2.3
5,404,815	+				-1.0
5,404,815	+				+0.3
5,404,815	+				-1.3
5,404,815	+				-1.8
5,404,815	+				-0.6
5,404,815	+				-2.9
5,404,815	+				+0.8
5,404,816	-				+1.6
5,404,816	-				+3.7
5,404,816	-				-0.0
5,404,816	-				+0.3
5,404,816	-				-2.1
5,404,816	-				-2.4
5,404,816	-				-0.9
5,404,816	-				-0.0
5,404,816	-				-2.1
5,404,816	-				-1.0
5,404,816	-				-0.9
5,404,816	-				-2.0
5,404,816	-				-2.3
5,404,816	-				-0.9
5,404,817	+				+1.7
5,404,817	+				-3.2
5,404,817	+				-0.6
5,404,817	+				-0.4
5,404,817	+				-2.9
5,404,817	+				-1.8
5,404,817	+				-1.9
5,404,817	+				-0.5
5,404,817	+				-1.0
5,404,817	+				+0.4
5,404,818	-				+1.3
5,404,818	-				-1.2
5,404,818	-				+0.5
5,404,818	-				+0.1
5,404,818	-				-0.0
5,404,818	-				-0.5
5,404,818	-				-0.9
5,404,818	-				-0.3
5,404,818	-				-0.2
5,404,818	-				-1.8
5,404,818	-				-0.5
5,404,818	-				-1.0
5,404,818	-				-1.7
5,404,818	-				-0.9
5,404,818	-				-2.3
5,404,834	-				-2.6
5,404,855	+				+1.3
5,404,855	+				+0.8
5,404,855	+				-1.0
5,404,856	-				+1.7
5,404,871	+				-0.3
5,404,871	+				+0.7
5,404,871	+				-2.5
5,404,871	+				+0.1
5,404,871	+				-0.5
5,404,871	+				+0.8
5,404,871	+				+1.6
5,404,872	-				+0.8
5,404,872	-				+2.7
5,404,872	-				-0.2
5,404,872	-				+1.2
5,404,872	-				+1.5
5,404,872	-				-0.7
5,404,873	+				+0.4
5,404,873	+				-0.9
5,404,874	-				+0.9
5,404,874	-				-0.0
5,404,874	-				+3.6
5,404,874	-				-1.5
5,404,874	-				-1.3
5,404,942	+				+0.1
5,404,942	+				+0.5
5,404,943	-				-0.2
5,404,943	-				-1.8
5,404,943	-				-1.7
5,404,943	-				+2.9
5,405,045	+		PFLU_RS24155	0.13	-0.2
5,405,045	+		PFLU_RS24155	0.13	+2.7
5,405,045	+		PFLU_RS24155	0.13	-1.5
5,405,045	+		PFLU_RS24155	0.13	+2.1
5,405,045	+		PFLU_RS24155	0.13	-0.5
5,405,045	+		PFLU_RS24155	0.13	+0.6
5,405,045	+		PFLU_RS24155	0.13	-2.5
5,405,046	-		PFLU_RS24155	0.13	+3.3
5,405,046	-		PFLU_RS24155	0.13	+0.3
5,405,046	-		PFLU_RS24155	0.13	+1.9
5,405,046	-		PFLU_RS24155	0.13	+0.0
5,405,046	-		PFLU_RS24155	0.13	+1.1
5,405,073	+		PFLU_RS24155	0.16	+0.5
5,405,073	+		PFLU_RS24155	0.16	+1.1
5,405,074	-		PFLU_RS24155	0.16	+1.4
5,405,074	-		PFLU_RS24155	0.16	-1.3
5,405,085	+		PFLU_RS24155	0.17	+2.6
5,405,085	+		PFLU_RS24155	0.17	-0.2
5,405,085	+		PFLU_RS24155	0.17	-0.9
5,405,085	+		PFLU_RS24155	0.17	-1.5
5,405,085	+		PFLU_RS24155	0.17	-1.5
5,405,086	-		PFLU_RS24155	0.18	-0.7
5,405,086	-		PFLU_RS24155	0.18	+1.6
5,405,086	-		PFLU_RS24155	0.18	+2.1
5,405,086	-		PFLU_RS24155	0.18	-2.0
5,405,086	-		PFLU_RS24155	0.18	+1.0
5,405,086	-		PFLU_RS24155	0.18	+1.1
5,405,086	-		PFLU_RS24155	0.18	+0.5
5,405,086	-		PFLU_RS24155	0.18	+0.1
5,405,086	-		PFLU_RS24155	0.18	-2.0
5,405,086	-		PFLU_RS24155	0.18	+0.5
5,405,086	-		PFLU_RS24155	0.18	-1.7
5,405,086	-		PFLU_RS24155	0.18	-0.2
5,405,086	-		PFLU_RS24155	0.18	-1.3
5,405,086	-		PFLU_RS24155	0.18	-2.7
5,405,165	+		PFLU_RS24155	0.26	-1.8
5,405,165	+		PFLU_RS24155	0.26	+1.5
5,405,166	-		PFLU_RS24155	0.26	-1.5
5,405,166	-		PFLU_RS24155	0.26	+0.5