Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22685

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
5,108,583	+		PFLU_RS22680	0.72	-1.7
5,108,596	+		PFLU_RS22680	0.72	-1.8
5,108,597	-		PFLU_RS22680	0.72	-0.2
5,108,597	-		PFLU_RS22680	0.72	+0.1
5,108,597	-		PFLU_RS22680	0.72	-2.3
5,108,698	+		PFLU_RS22680	0.76	+0.1
5,108,698	+		PFLU_RS22680	0.76	+1.1
5,108,698	+		PFLU_RS22680	0.76	-0.7
5,108,698	+		PFLU_RS22680	0.76	-1.1
5,108,698	+		PFLU_RS22680	0.76	-0.7
5,108,698	+		PFLU_RS22680	0.76	+0.1
5,108,698	+		PFLU_RS22680	0.76	+0.1
5,108,698	+		PFLU_RS22680	0.76	-1.6
5,108,698	+		PFLU_RS22680	0.76	+1.8
5,108,699	-		PFLU_RS22680	0.76	-1.6
5,108,699	-		PFLU_RS22680	0.76	-2.1
5,108,699	-		PFLU_RS22680	0.76	-2.1
5,108,699	-		PFLU_RS22680	0.76	-0.7
5,108,699	-		PFLU_RS22680	0.76	-0.1
5,108,699	-		PFLU_RS22680	0.76	+2.1
5,108,759	-		PFLU_RS22680	0.79	-1.2
5,108,850	+		PFLU_RS22680	0.82	+0.5
5,108,850	+		PFLU_RS22680	0.82	-0.2
5,108,850	+		PFLU_RS22680	0.82	-1.6
5,108,850	+		PFLU_RS22680	0.82	+2.2
5,109,085	+				-1.9
5,109,085	+				+1.1
5,109,086	-				-0.5
5,109,086	-				+0.8
5,109,086	-				-0.9
5,109,086	-				-1.1
5,109,179	-				-0.8
5,109,179	-				+1.1
5,109,179	-				-0.6
5,109,209	+				+1.7
5,109,209	+				-0.5
5,109,210	-				+1.7
5,109,269	+				-0.2
5,109,269	+				+0.0
5,109,269	+				-1.6
5,109,269	+				-1.6
5,109,269	+				-0.2
5,109,269	+				+0.1
5,109,270	-				+0.8
5,109,270	-				-0.7
5,109,433	-				+0.4
5,109,433	-				-0.5
5,109,439	-				+1.4
5,109,439	-				+2.2
5,109,439	-				+1.9
5,109,439	-				-0.1
5,109,439	-				+1.8
5,109,439	-				-0.2
5,109,439	-				-1.4
5,109,439	-				+0.6
5,109,551	+				-0.4
5,109,551	+				-0.5
5,109,551	+				-0.9
5,109,551	+				-1.7
5,109,551	+				+2.1
5,109,552	-				-1.7
5,109,552	-				+0.1
5,109,677	+		PFLU_RS22685	0.15	-1.0
5,109,678	-		PFLU_RS22685	0.15	-0.8
5,109,692	+		PFLU_RS22685	0.17	-2.4
5,109,692	+		PFLU_RS22685	0.17	-0.2
5,109,692	+		PFLU_RS22685	0.17	-2.1
5,109,692	+		PFLU_RS22685	0.17	+0.9
5,109,692	+		PFLU_RS22685	0.17	-0.6
5,109,692	+		PFLU_RS22685	0.17	-0.2
5,109,692	+		PFLU_RS22685	0.17	+0.3
5,109,692	+		PFLU_RS22685	0.17	+0.5
5,109,692	+		PFLU_RS22685	0.17	-1.2
5,109,692	+		PFLU_RS22685	0.17	-1.2
5,109,693	-		PFLU_RS22685	0.17	+1.3
5,109,693	-		PFLU_RS22685	0.17	-1.1
5,109,693	-		PFLU_RS22685	0.17	+0.5
5,109,693	-		PFLU_RS22685	0.17	+0.9
5,109,693	-		PFLU_RS22685	0.17	+0.6
5,109,693	-		PFLU_RS22685	0.17	+1.8
5,109,693	-		PFLU_RS22685	0.17	-1.9
5,109,693	-		PFLU_RS22685	0.17	+0.1
5,109,693	-		PFLU_RS22685	0.17	-0.9
5,109,693	-		PFLU_RS22685	0.17	-0.9
5,109,693	-		PFLU_RS22685	0.17	+1.1
5,109,693	-		PFLU_RS22685	0.17	-0.7
5,109,693	-		PFLU_RS22685	0.17	-0.7
5,109,822	+		PFLU_RS22685	0.28	+0.1
5,109,822	+		PFLU_RS22685	0.28	-2.7
5,109,822	+		PFLU_RS22685	0.28	-1.9
5,109,822	+		PFLU_RS22685	0.28	-3.1
5,109,822	+		PFLU_RS22685	0.28	-1.2
5,109,822	+		PFLU_RS22685	0.28	+0.1
5,109,822	+		PFLU_RS22685	0.28	-2.1
5,109,822	+		PFLU_RS22685	0.28	-2.2
5,109,823	-		PFLU_RS22685	0.28	+1.7
5,109,823	-		PFLU_RS22685	0.28	-1.8
5,109,823	-		PFLU_RS22685	0.28	+0.1
5,109,823	-		PFLU_RS22685	0.28	-0.7
5,109,823	-		PFLU_RS22685	0.28	-2.1
5,109,823	-		PFLU_RS22685	0.28	+1.7
5,109,823	-		PFLU_RS22685	0.28	-0.9
5,109,823	-		PFLU_RS22685	0.28	-1.6
5,109,842	+		PFLU_RS22685	0.30	-1.2
5,109,842	+		PFLU_RS22685	0.30	-0.0
5,109,842	+		PFLU_RS22685	0.30	-0.6
5,109,842	+		PFLU_RS22685	0.30	-2.9
5,109,842	+		PFLU_RS22685	0.30	-2.8
5,109,843	-		PFLU_RS22685	0.30	-0.8
5,109,843	-		PFLU_RS22685	0.30	+0.2
5,109,843	-		PFLU_RS22685	0.30	-0.4
5,109,843	-		PFLU_RS22685	0.30	-0.9
5,110,013	+		PFLU_RS22685	0.45	-0.4
5,110,013	+		PFLU_RS22685	0.45	-1.1
5,110,014	-		PFLU_RS22685	0.45	-1.5
5,110,014	-		PFLU_RS22685	0.45	-2.0
5,110,014	-		PFLU_RS22685	0.45	+0.1
5,110,014	-		PFLU_RS22685	0.45	-1.2
5,110,014	-		PFLU_RS22685	0.45	-1.5
5,110,220	+		PFLU_RS22685	0.63	+0.7
5,110,226	+		PFLU_RS22685	0.64	-1.3
5,110,227	-		PFLU_RS22685	0.64	-2.3
5,110,227	-		PFLU_RS22685	0.64	+1.1
5,110,227	-		PFLU_RS22685	0.64	-0.5
5,110,227	-		PFLU_RS22685	0.64	-1.0
5,110,427	+		PFLU_RS22685	0.82	-0.7
5,110,427	+		PFLU_RS22685	0.82	+1.1
5,110,463	+		PFLU_RS22685	0.85	-0.0
5,110,533	-				+0.3
5,110,533	-				-2.6
5,110,615	+				-0.6
5,110,615	+				-1.5
5,110,615	+				-1.6
5,110,616	-				-0.9
5,110,616	-				-0.9
5,110,616	-				-2.3
5,110,616	-				-1.3
5,110,724	+				-2.8
5,110,725	-				+0.4
5,110,725	-				-2.6
5,110,739	+				-0.7
5,110,739	+				+2.1
5,110,739	+				+1.2
5,110,740	-				-2.0
5,110,740	-				+0.9
5,110,740	-				-0.9
5,110,808	+		PFLU_RS22690	0.15	-0.9
5,110,808	+		PFLU_RS22690	0.15	-1.8
5,110,901	+		PFLU_RS22690	0.25	+0.8
5,110,901	+		PFLU_RS22690	0.25	+0.1
5,110,901	+		PFLU_RS22690	0.25	-2.4
5,110,901	+		PFLU_RS22690	0.25	-0.3
5,110,902	-		PFLU_RS22690	0.25	-0.1
5,110,902	-		PFLU_RS22690	0.25	-1.7
5,110,902	-		PFLU_RS22690	0.25	-0.3
5,110,902	-		PFLU_RS22690	0.25	+1.1
5,110,902	-		PFLU_RS22690	0.25	-0.0
5,110,902	-		PFLU_RS22690	0.25	-0.9
5,110,973	+		PFLU_RS22690	0.33	-2.5
5,110,973	+		PFLU_RS22690	0.33	+1.0
5,110,973	+		PFLU_RS22690	0.33	-0.4
5,110,973	+		PFLU_RS22690	0.33	+1.7
5,110,973	+		PFLU_RS22690	0.33	+2.8
5,110,973	+		PFLU_RS22690	0.33	-0.5
5,110,973	+		PFLU_RS22690	0.33	-0.3
5,110,973	+		PFLU_RS22690	0.33	-2.9
5,110,973	+		PFLU_RS22690	0.33	-1.3
5,110,973	+		PFLU_RS22690	0.33	+1.8
5,110,973	+		PFLU_RS22690	0.33	+0.5
5,110,973	+		PFLU_RS22690	0.33	+0.5
5,110,973	+		PFLU_RS22690	0.33	-0.1
5,110,973	+		PFLU_RS22690	0.33	-2.1
5,110,973	+		PFLU_RS22690	0.33	+0.5
5,110,973	+		PFLU_RS22690	0.33	-2.5
5,110,973	+		PFLU_RS22690	0.33	-1.4
5,110,973	+		PFLU_RS22690	0.33	+1.1
5,110,973	+		PFLU_RS22690	0.33	+1.1
5,110,973	+		PFLU_RS22690	0.33	-0.5
5,110,973	+		PFLU_RS22690	0.33	-1.5
5,110,974	-		PFLU_RS22690	0.33	+1.1
5,110,974	-		PFLU_RS22690	0.33	-2.4
5,110,974	-		PFLU_RS22690	0.33	-2.4
5,110,974	-		PFLU_RS22690	0.33	+2.3
5,110,974	-		PFLU_RS22690	0.33	-0.3
5,110,974	-		PFLU_RS22690	0.33	+0.5
5,110,974	-		PFLU_RS22690	0.33	-1.4
5,110,974	-		PFLU_RS22690	0.33	+0.5
5,110,974	-		PFLU_RS22690	0.33	-0.3
5,110,974	-		PFLU_RS22690	0.33	-1.4
5,110,974	-		PFLU_RS22690	0.33	+0.1
5,110,974	-		PFLU_RS22690	0.33	-1.7
5,110,974	-		PFLU_RS22690	0.33	+0.1
5,110,974	-		PFLU_RS22690	0.33	+0.5
5,110,974	-		PFLU_RS22690	0.33	-1.4
5,110,974	-		PFLU_RS22690	0.33	-2.5
5,110,974	-		PFLU_RS22690	0.33	-0.5
5,110,974	-		PFLU_RS22690	0.33	-0.0
5,111,309	-		PFLU_RS22690	0.71	-0.6
5,111,329	+		PFLU_RS22690	0.73	+0.1
5,111,329	+		PFLU_RS22690	0.73	-0.3
5,111,329	+		PFLU_RS22690	0.73	+0.1
5,111,329	+		PFLU_RS22690	0.73	+0.1
5,111,329	+		PFLU_RS22690	0.73	-0.9
5,111,329	+		PFLU_RS22690	0.73	+4.1
5,111,329	+		PFLU_RS22690	0.73	-0.5
5,111,329	+		PFLU_RS22690	0.73	-0.7
5,111,330	-		PFLU_RS22690	0.73	+0.7
5,111,330	-		PFLU_RS22690	0.73	-1.5
5,111,330	-		PFLU_RS22690	0.73	-0.6
5,111,330	-		PFLU_RS22690	0.73	+0.5
5,111,330	-		PFLU_RS22690	0.73	-0.3
5,111,330	-		PFLU_RS22690	0.73	-1.7
5,111,330	-		PFLU_RS22690	0.73	+1.1
5,111,330	-		PFLU_RS22690	0.73	-0.7
5,111,347	+		PFLU_RS22690	0.75	+1.1
5,111,347	+		PFLU_RS22690	0.75	-2.7
5,111,347	+		PFLU_RS22690	0.75	+1.1
5,111,347	+		PFLU_RS22690	0.75	-0.9
5,111,347	+		PFLU_RS22690	0.75	-0.9
5,111,347	+		PFLU_RS22690	0.75	+0.5
5,111,347	+		PFLU_RS22690	0.75	-0.5
5,111,348	-		PFLU_RS22690	0.75	-1.9
5,111,359	+		PFLU_RS22690	0.77	-1.6
5,111,359	+		PFLU_RS22690	0.77	+0.1
5,111,360	-		PFLU_RS22690	0.77	+0.7
5,111,360	-		PFLU_RS22690	0.77	-0.7
5,111,360	-		PFLU_RS22690	0.77	+2.5
5,111,360	-		PFLU_RS22690	0.77	-0.5
5,111,360	-		PFLU_RS22690	0.77	-1.1
5,111,360	-		PFLU_RS22690	0.77	+0.5
5,111,360	-		PFLU_RS22690	0.77	-1.3
5,111,392	+		PFLU_RS22690	0.80	+0.1
5,111,432	+		PFLU_RS22690	0.85	+1.8
5,111,432	+		PFLU_RS22690	0.85	-0.3
5,111,432	+		PFLU_RS22690	0.85	-1.9
5,111,432	+		PFLU_RS22690	0.85	+1.9
5,111,432	+		PFLU_RS22690	0.85	+0.5
5,111,432	+		PFLU_RS22690	0.85	-1.6
5,111,432	+		PFLU_RS22690	0.85	-1.4
5,111,433	-		PFLU_RS22690	0.85	-0.7
5,111,433	-		PFLU_RS22690	0.85	+4.1
5,111,433	-		PFLU_RS22690	0.85	-0.3
5,111,433	-		PFLU_RS22690	0.85	+2.4
5,111,433	-		PFLU_RS22690	0.85	+0.7
5,111,433	-		PFLU_RS22690	0.85	-0.7
5,111,433	-		PFLU_RS22690	0.85	-1.4
5,111,433	-		PFLU_RS22690	0.85	+1.3
5,111,553	+				+0.7
5,111,553	+				+0.8
5,111,553	+				-0.3
5,111,553	+				+2.2
5,111,553	+				+2.1
5,111,553	+				-0.3
5,111,553	+				+1.1
5,111,553	+				+0.9
5,111,553	+				+0.6
5,111,553	+				-1.9
5,111,553	+				-0.5
5,111,553	+				+0.4
5,111,553	+				+1.9
5,111,553	+				-0.0
5,111,553	+				+0.3
5,111,554	-				+1.0
5,111,554	-				-0.0
5,111,554	-				+2.1
5,111,554	-				+2.2
5,111,554	-				-1.5
5,111,554	-				-1.8
5,111,554	-				-1.6
5,111,554	-				+0.8