Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS22680

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
5,105,849	+		PFLU_RS22675	0.28	-0.5
5,105,849	+		PFLU_RS22675	0.28	-0.5
5,105,849	+		PFLU_RS22675	0.28	+0.1
5,105,850	-		PFLU_RS22675	0.28	-2.8
5,105,920	-		PFLU_RS22675	0.34	+0.3
5,106,020	+		PFLU_RS22675	0.42	-1.2
5,106,286	-		PFLU_RS22675	0.64	-2.4
5,106,310	+		PFLU_RS22675	0.66	+1.4
5,106,421	-		PFLU_RS22675	0.76	-2.6
5,106,455	+		PFLU_RS22675	0.78	-0.9
5,106,455	+		PFLU_RS22675	0.78	+0.5
5,106,455	+		PFLU_RS22675	0.78	+2.1
5,106,456	-		PFLU_RS22675	0.79	-1.1
5,106,456	-		PFLU_RS22675	0.79	+1.3
5,106,546	+		PFLU_RS22675	0.86	-2.2
5,106,547	-		PFLU_RS22675	0.86	-0.7
5,106,551	+		PFLU_RS22675	0.86	-0.4
5,106,552	-		PFLU_RS22675	0.87	-1.4
5,106,552	-		PFLU_RS22675	0.87	-0.7
5,106,580	+		PFLU_RS22675	0.89	-0.7
5,106,580	+		PFLU_RS22675	0.89	-0.1
5,106,580	+		PFLU_RS22675	0.89	+3.3
5,106,581	-		PFLU_RS22675	0.89	+1.0
5,106,646	+				+2.2
5,106,647	-				+0.0
5,106,674	+				-0.7
5,106,674	+				+0.8
5,106,674	+				-1.7
5,106,674	+				-0.2
5,106,674	+				-0.2
5,106,674	+				-0.2
5,106,674	+				+0.7
5,106,674	+				+1.7
5,106,674	+				-2.2
5,106,674	+				-1.6
5,106,674	+				-1.4
5,106,674	+				-1.5
5,106,674	+				+2.8
5,106,674	+				-0.7
5,106,675	-				+0.5
5,106,675	-				+1.9
5,106,675	-				-1.1
5,106,675	-				-1.6
5,106,675	-				-0.9
5,106,675	-				-0.9
5,106,675	-				+0.2
5,106,675	-				-1.8
5,106,675	-				+2.8
5,106,675	-				-0.2
5,106,675	-				+0.3
5,106,675	-				-0.2
5,106,675	-				-3.3
5,106,675	-				+1.8
5,106,675	-				+1.7
5,106,700	+				+0.1
5,106,700	+				-2.6
5,106,700	+				-0.9
5,106,701	-				-0.2
5,106,701	-				-1.1
5,106,785	+				-2.1
5,106,786	-				+0.3
5,106,786	-				-0.4
5,106,786	-				-0.7
5,106,786	-				+1.8
5,106,786	-				-1.4
5,106,908	+				+0.9
5,106,908	+				-0.7
5,106,908	+				+1.1
5,106,908	+				+2.2
5,106,908	+				-0.9
5,106,908	+				-1.1
5,106,908	+				-2.7
5,106,908	+				-1.2
5,106,908	+				+1.1
5,106,908	+				+1.1
5,106,908	+				+0.5
5,106,908	+				-0.0
5,106,908	+				-1.5
5,106,908	+				+2.1
5,106,908	+				+1.5
5,106,909	-				-0.7
5,106,909	-				-0.5
5,106,909	-				-0.4
5,106,909	-				-1.5
5,106,909	-				+2.3
5,106,909	-				+1.3
5,106,909	-				+2.6
5,106,909	-				-0.2
5,106,909	-				+0.9
5,107,136	+		PFLU_RS22680	0.16	-2.8
5,107,136	+		PFLU_RS22680	0.16	-1.2
5,107,136	+		PFLU_RS22680	0.16	+0.5
5,107,136	+		PFLU_RS22680	0.16	+0.9
5,107,136	+		PFLU_RS22680	0.16	+0.1
5,107,137	-		PFLU_RS22680	0.16	+1.7
5,107,137	-		PFLU_RS22680	0.16	+1.6
5,107,137	-		PFLU_RS22680	0.16	-2.2
5,107,137	-		PFLU_RS22680	0.16	-0.1
5,107,137	-		PFLU_RS22680	0.16	+0.1
5,107,137	-		PFLU_RS22680	0.16	+2.6
5,107,137	-		PFLU_RS22680	0.16	-0.6
5,107,137	-		PFLU_RS22680	0.16	-2.1
5,107,137	-		PFLU_RS22680	0.16	+0.9
5,107,137	-		PFLU_RS22680	0.16	+0.7
5,107,301	+		PFLU_RS22680	0.22	+1.1
5,107,302	-		PFLU_RS22680	0.22	+1.0
5,107,302	-		PFLU_RS22680	0.22	+1.2
5,107,302	-		PFLU_RS22680	0.22	-1.5
5,107,302	-		PFLU_RS22680	0.22	+0.8
5,107,302	-		PFLU_RS22680	0.22	+1.7
5,107,302	-		PFLU_RS22680	0.22	-1.8
5,107,343	+		PFLU_RS22680	0.24	-0.9
5,107,344	-		PFLU_RS22680	0.24	-0.1
5,107,344	-		PFLU_RS22680	0.24	+1.5
5,107,344	-		PFLU_RS22680	0.24	-1.5
5,107,344	-		PFLU_RS22680	0.24	+1.6
5,107,493	+		PFLU_RS22680	0.30	-2.0
5,107,493	+		PFLU_RS22680	0.30	-1.2
5,107,493	+		PFLU_RS22680	0.30	-0.7
5,107,493	+		PFLU_RS22680	0.30	-1.7
5,107,493	+		PFLU_RS22680	0.30	-2.4
5,107,493	+		PFLU_RS22680	0.30	+0.2
5,107,493	+		PFLU_RS22680	0.30	-2.2
5,107,493	+		PFLU_RS22680	0.30	+2.5
5,107,493	+		PFLU_RS22680	0.30	+0.1
5,107,493	+		PFLU_RS22680	0.30	-0.2
5,107,493	+		PFLU_RS22680	0.30	-0.2
5,107,493	+		PFLU_RS22680	0.30	-1.7
5,107,493	+		PFLU_RS22680	0.30	-2.9
5,107,493	+		PFLU_RS22680	0.30	+2.1
5,107,493	+		PFLU_RS22680	0.30	-0.3
5,107,494	-		PFLU_RS22680	0.30	+1.4
5,107,494	-		PFLU_RS22680	0.30	-2.0
5,107,494	-		PFLU_RS22680	0.30	+2.1
5,107,494	-		PFLU_RS22680	0.30	+2.3
5,107,494	-		PFLU_RS22680	0.30	-0.7
5,107,494	-		PFLU_RS22680	0.30	-2.6
5,107,494	-		PFLU_RS22680	0.30	-0.1
5,107,494	-		PFLU_RS22680	0.30	+2.3
5,107,494	-		PFLU_RS22680	0.30	+2.1
5,107,494	-		PFLU_RS22680	0.30	-1.3
5,107,494	-		PFLU_RS22680	0.30	+0.1
5,107,494	-		PFLU_RS22680	0.30	-1.1
5,107,517	+		PFLU_RS22680	0.31	-1.9
5,107,571	+		PFLU_RS22680	0.33	-0.0
5,107,571	+		PFLU_RS22680	0.33	+0.3
5,107,571	+		PFLU_RS22680	0.33	-0.9
5,107,571	+		PFLU_RS22680	0.33	-3.1
5,107,571	+		PFLU_RS22680	0.33	+0.2
5,107,571	+		PFLU_RS22680	0.33	-0.5
5,107,571	+		PFLU_RS22680	0.33	-0.7
5,107,572	-		PFLU_RS22680	0.33	+1.5
5,107,572	-		PFLU_RS22680	0.33	-2.2
5,107,572	-		PFLU_RS22680	0.33	-0.7
5,107,572	-		PFLU_RS22680	0.33	+0.5
5,107,572	-		PFLU_RS22680	0.33	-1.5
5,107,572	-		PFLU_RS22680	0.33	+5.8
5,107,572	-		PFLU_RS22680	0.33	-0.1
5,107,572	-		PFLU_RS22680	0.33	+1.1
5,107,730	+		PFLU_RS22680	0.39	+0.9
5,107,829	+		PFLU_RS22680	0.43	+0.1
5,107,830	-		PFLU_RS22680	0.43	+1.1
5,107,830	-		PFLU_RS22680	0.43	+1.7
5,107,830	-		PFLU_RS22680	0.43	+0.2
5,107,830	-		PFLU_RS22680	0.43	-0.7
5,107,967	+		PFLU_RS22680	0.48	+1.1
5,107,967	+		PFLU_RS22680	0.48	-1.1
5,107,967	+		PFLU_RS22680	0.48	-1.1
5,107,967	+		PFLU_RS22680	0.48	-1.8
5,107,967	+		PFLU_RS22680	0.48	-1.5
5,107,968	-		PFLU_RS22680	0.48	+1.2
5,107,968	-		PFLU_RS22680	0.48	+0.8
5,107,968	-		PFLU_RS22680	0.48	-1.6
5,107,968	-		PFLU_RS22680	0.48	+0.1
5,107,968	-		PFLU_RS22680	0.48	+0.7
5,108,276	+		PFLU_RS22680	0.60	-1.4
5,108,276	+		PFLU_RS22680	0.60	-1.8
5,108,324	+		PFLU_RS22680	0.62	+2.5
5,108,324	+		PFLU_RS22680	0.62	-0.2
5,108,324	+		PFLU_RS22680	0.62	+0.7
5,108,324	+		PFLU_RS22680	0.62	-2.1
5,108,324	+		PFLU_RS22680	0.62	-1.6
5,108,324	+		PFLU_RS22680	0.62	-0.2
5,108,324	+		PFLU_RS22680	0.62	-1.9
5,108,324	+		PFLU_RS22680	0.62	-0.7
5,108,324	+		PFLU_RS22680	0.62	-0.7
5,108,324	+		PFLU_RS22680	0.62	+0.1
5,108,325	-		PFLU_RS22680	0.62	+1.1
5,108,325	-		PFLU_RS22680	0.62	-1.2
5,108,325	-		PFLU_RS22680	0.62	-0.2
5,108,325	-		PFLU_RS22680	0.62	-2.3
5,108,325	-		PFLU_RS22680	0.62	-2.2
5,108,325	-		PFLU_RS22680	0.62	+2.4
5,108,325	-		PFLU_RS22680	0.62	+0.9
5,108,325	-		PFLU_RS22680	0.62	+0.2
5,108,325	-		PFLU_RS22680	0.62	+0.4
5,108,325	-		PFLU_RS22680	0.62	-0.9
5,108,375	+		PFLU_RS22680	0.64	+0.5
5,108,375	+		PFLU_RS22680	0.64	-1.1
5,108,375	+		PFLU_RS22680	0.64	-1.5
5,108,375	+		PFLU_RS22680	0.64	-0.9
5,108,399	+		PFLU_RS22680	0.65	-1.1
5,108,399	+		PFLU_RS22680	0.65	-0.5
5,108,400	-		PFLU_RS22680	0.65	+0.3
5,108,423	+		PFLU_RS22680	0.66	-0.9
5,108,424	-		PFLU_RS22680	0.66	+2.9
5,108,424	-		PFLU_RS22680	0.66	+2.8
5,108,583	+		PFLU_RS22680	0.72	-1.7
5,108,596	+		PFLU_RS22680	0.72	-1.8
5,108,597	-		PFLU_RS22680	0.72	-0.2
5,108,597	-		PFLU_RS22680	0.72	+0.1
5,108,597	-		PFLU_RS22680	0.72	-2.3
5,108,698	+		PFLU_RS22680	0.76	+0.1
5,108,698	+		PFLU_RS22680	0.76	+1.1
5,108,698	+		PFLU_RS22680	0.76	-0.7
5,108,698	+		PFLU_RS22680	0.76	-1.1
5,108,698	+		PFLU_RS22680	0.76	-0.7
5,108,698	+		PFLU_RS22680	0.76	+0.1
5,108,698	+		PFLU_RS22680	0.76	+0.1
5,108,698	+		PFLU_RS22680	0.76	-1.6
5,108,698	+		PFLU_RS22680	0.76	+1.8
5,108,699	-		PFLU_RS22680	0.76	-1.6
5,108,699	-		PFLU_RS22680	0.76	-2.1
5,108,699	-		PFLU_RS22680	0.76	-2.1
5,108,699	-		PFLU_RS22680	0.76	-0.7
5,108,699	-		PFLU_RS22680	0.76	-0.1
5,108,699	-		PFLU_RS22680	0.76	+2.1
5,108,759	-		PFLU_RS22680	0.79	-1.2
5,108,850	+		PFLU_RS22680	0.82	+0.5
5,108,850	+		PFLU_RS22680	0.82	-0.2
5,108,850	+		PFLU_RS22680	0.82	-1.6
5,108,850	+		PFLU_RS22680	0.82	+2.2
5,109,085	+				-1.9
5,109,085	+				+1.1
5,109,086	-				-0.5
5,109,086	-				+0.8
5,109,086	-				-0.9
5,109,086	-				-1.1
5,109,179	-				-0.8
5,109,179	-				+1.1
5,109,179	-				-0.6
5,109,209	+				+1.7
5,109,209	+				-0.5
5,109,210	-				+1.7
5,109,269	+				-0.2
5,109,269	+				+0.0
5,109,269	+				-1.6
5,109,269	+				-1.6
5,109,269	+				-0.2
5,109,269	+				+0.1
5,109,270	-				+0.8
5,109,270	-				-0.7
5,109,433	-				+0.4
5,109,433	-				-0.5
5,109,439	-				+1.4
5,109,439	-				+2.2
5,109,439	-				+1.9
5,109,439	-				-0.1
5,109,439	-				+1.8
5,109,439	-				-0.2
5,109,439	-				-1.4
5,109,439	-				+0.6
5,109,551	+				-0.4
5,109,551	+				-0.5
5,109,551	+				-0.9
5,109,551	+				-1.7
5,109,551	+				+2.1
5,109,552	-				-1.7
5,109,552	-				+0.1
5,109,677	+		PFLU_RS22685	0.15	-1.0
5,109,678	-		PFLU_RS22685	0.15	-0.8
5,109,692	+		PFLU_RS22685	0.17	-2.4
5,109,692	+		PFLU_RS22685	0.17	-0.2
5,109,692	+		PFLU_RS22685	0.17	-2.1
5,109,692	+		PFLU_RS22685	0.17	+0.9
5,109,692	+		PFLU_RS22685	0.17	-0.6
5,109,692	+		PFLU_RS22685	0.17	-0.2
5,109,692	+		PFLU_RS22685	0.17	+0.3
5,109,692	+		PFLU_RS22685	0.17	+0.5
5,109,692	+		PFLU_RS22685	0.17	-1.2
5,109,692	+		PFLU_RS22685	0.17	-1.2
5,109,693	-		PFLU_RS22685	0.17	+1.3
5,109,693	-		PFLU_RS22685	0.17	-1.1
5,109,693	-		PFLU_RS22685	0.17	+0.5
5,109,693	-		PFLU_RS22685	0.17	+0.9
5,109,693	-		PFLU_RS22685	0.17	+0.6
5,109,693	-		PFLU_RS22685	0.17	+1.8
5,109,693	-		PFLU_RS22685	0.17	-1.9
5,109,693	-		PFLU_RS22685	0.17	+0.1
5,109,693	-		PFLU_RS22685	0.17	-0.9
5,109,693	-		PFLU_RS22685	0.17	-0.9
5,109,693	-		PFLU_RS22685	0.17	+1.1
5,109,693	-		PFLU_RS22685	0.17	-0.7
5,109,693	-		PFLU_RS22685	0.17	-0.7
5,109,822	+		PFLU_RS22685	0.28	+0.1
5,109,822	+		PFLU_RS22685	0.28	-2.7
5,109,822	+		PFLU_RS22685	0.28	-1.9
5,109,822	+		PFLU_RS22685	0.28	-3.1
5,109,822	+		PFLU_RS22685	0.28	-1.2
5,109,822	+		PFLU_RS22685	0.28	+0.1
5,109,822	+		PFLU_RS22685	0.28	-2.1
5,109,822	+		PFLU_RS22685	0.28	-2.2
5,109,823	-		PFLU_RS22685	0.28	+1.7
5,109,823	-		PFLU_RS22685	0.28	-1.8
5,109,823	-		PFLU_RS22685	0.28	+0.1
5,109,823	-		PFLU_RS22685	0.28	-0.7
5,109,823	-		PFLU_RS22685	0.28	-2.1
5,109,823	-		PFLU_RS22685	0.28	+1.7
5,109,823	-		PFLU_RS22685	0.28	-0.9
5,109,823	-		PFLU_RS22685	0.28	-1.6
5,109,842	+		PFLU_RS22685	0.30	-1.2
5,109,842	+		PFLU_RS22685	0.30	-0.0
5,109,842	+		PFLU_RS22685	0.30	-0.6
5,109,842	+		PFLU_RS22685	0.30	-2.9
5,109,842	+		PFLU_RS22685	0.30	-2.8
5,109,843	-		PFLU_RS22685	0.30	-0.8
5,109,843	-		PFLU_RS22685	0.30	+0.2
5,109,843	-		PFLU_RS22685	0.30	-0.4
5,109,843	-		PFLU_RS22685	0.30	-0.9
5,110,013	+		PFLU_RS22685	0.45	-0.4
5,110,013	+		PFLU_RS22685	0.45	-1.1
5,110,014	-		PFLU_RS22685	0.45	-1.5
5,110,014	-		PFLU_RS22685	0.45	-2.0
5,110,014	-		PFLU_RS22685	0.45	+0.1
5,110,014	-		PFLU_RS22685	0.45	-1.2
5,110,014	-		PFLU_RS22685	0.45	-1.5
5,110,220	+		PFLU_RS22685	0.63	+0.7
5,110,226	+		PFLU_RS22685	0.64	-1.3
5,110,227	-		PFLU_RS22685	0.64	-2.3
5,110,227	-		PFLU_RS22685	0.64	+1.1
5,110,227	-		PFLU_RS22685	0.64	-0.5
5,110,227	-		PFLU_RS22685	0.64	-1.0