Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18920

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
4,278,040	+		PFLU_RS18915	0.74	-1.6
4,278,040	+		PFLU_RS18915	0.74	+0.3
4,278,041	-		PFLU_RS18915	0.74	-1.7
4,278,164	+		PFLU_RS18915	0.77	-1.1
4,278,165	-		PFLU_RS18915	0.77	-2.5
4,278,165	-		PFLU_RS18915	0.77	-1.8
4,278,165	-		PFLU_RS18915	0.77	-0.5
4,278,333	+		PFLU_RS18915	0.82	-1.6
4,278,334	-		PFLU_RS18915	0.82	-3.7
4,278,423	+		PFLU_RS18915	0.84	-2.1
4,278,423	+		PFLU_RS18915	0.84	+0.4
4,278,424	-		PFLU_RS18915	0.84	-1.4
4,278,736	+				-3.8
4,278,736	+				-1.4
4,278,755	+				-3.4
4,278,755	+				-1.1
4,278,755	+				-2.0
4,278,872	+				-0.1
4,278,873	-				+0.3
4,278,873	-				-1.7
4,278,929	+				-1.7
4,278,930	-				+0.3
4,278,930	-				-2.6
4,278,987	-				-0.1
4,279,209	-		PFLU_RS18920	0.12	-2.8
4,279,209	-		PFLU_RS18920	0.12	-1.1
4,279,214	+		PFLU_RS18920	0.12	-2.4
4,279,215	-		PFLU_RS18920	0.12	-1.7
4,279,238	+		PFLU_RS18920	0.14	-2.0
4,279,238	+		PFLU_RS18920	0.14	-2.3
4,279,238	+		PFLU_RS18920	0.14	-2.1
4,279,238	+		PFLU_RS18920	0.14	-2.1
4,279,238	+		PFLU_RS18920	0.14	-1.3
4,279,239	-		PFLU_RS18920	0.14	-2.4
4,279,239	-		PFLU_RS18920	0.14	-1.6
4,279,239	-		PFLU_RS18920	0.14	-1.9
4,279,239	-		PFLU_RS18920	0.14	-1.1
4,279,239	-		PFLU_RS18920	0.14	-1.9
4,279,239	-		PFLU_RS18920	0.14	-2.1
4,279,239	-		PFLU_RS18920	0.14	-0.1
4,279,239	-		PFLU_RS18920	0.14	-2.3
4,279,289	+		PFLU_RS18920	0.17	-1.6
4,279,290	-		PFLU_RS18920	0.17	+2.9
4,279,355	+		PFLU_RS18920	0.20	-2.2
4,279,355	+		PFLU_RS18920	0.20	-1.7
4,279,355	+		PFLU_RS18920	0.20	-3.0
4,279,355	+		PFLU_RS18920	0.20	-1.7
4,279,355	+		PFLU_RS18920	0.20	-2.9
4,279,356	-		PFLU_RS18920	0.20	-1.1
4,279,356	-		PFLU_RS18920	0.20	-3.9
4,279,356	-		PFLU_RS18920	0.20	-0.6
4,279,356	-		PFLU_RS18920	0.20	+0.0
4,279,356	-		PFLU_RS18920	0.20	-1.3
4,279,356	-		PFLU_RS18920	0.20	+0.9
4,279,356	-		PFLU_RS18920	0.20	-0.7
4,279,379	-		PFLU_RS18920	0.22	-2.7
4,279,449	-		PFLU_RS18920	0.26	+2.4
4,279,550	+		PFLU_RS18920	0.32	+0.4
4,279,550	+		PFLU_RS18920	0.32	-0.7
4,279,550	+		PFLU_RS18920	0.32	-2.3
4,279,550	+		PFLU_RS18920	0.32	-3.1
4,279,551	-		PFLU_RS18920	0.32	-1.5
4,279,551	-		PFLU_RS18920	0.32	+0.3
4,279,551	-		PFLU_RS18920	0.32	+1.4
4,279,556	+		PFLU_RS18920	0.32	-0.4
4,279,556	+		PFLU_RS18920	0.32	-1.0
4,279,556	+		PFLU_RS18920	0.32	+0.3
4,279,556	+		PFLU_RS18920	0.32	+0.6
4,279,556	+		PFLU_RS18920	0.32	-2.5
4,279,557	-		PFLU_RS18920	0.32	+0.7
4,279,557	-		PFLU_RS18920	0.32	-1.4
4,279,557	-		PFLU_RS18920	0.32	-1.4
4,279,557	-		PFLU_RS18920	0.32	-2.3
4,279,557	-		PFLU_RS18920	0.32	-2.8
4,279,557	-		PFLU_RS18920	0.32	+0.7
4,279,557	-		PFLU_RS18920	0.32	+0.3
4,279,599	+		PFLU_RS18920	0.34	-1.1
4,279,610	+		PFLU_RS18920	0.35	-2.7
4,279,611	-		PFLU_RS18920	0.35	-1.3
4,279,625	+		PFLU_RS18920	0.36	-2.3
4,279,625	+		PFLU_RS18920	0.36	-2.0
4,279,625	+		PFLU_RS18920	0.36	-1.4
4,279,626	-		PFLU_RS18920	0.36	-1.1
4,279,699	-		PFLU_RS18920	0.40	-1.1
4,279,699	-		PFLU_RS18920	0.40	-2.6
4,279,699	-		PFLU_RS18920	0.40	-0.2
4,279,790	+		PFLU_RS18920	0.46	-2.4
4,279,790	+		PFLU_RS18920	0.46	+0.8
4,279,791	-		PFLU_RS18920	0.46	-1.8
4,279,791	-		PFLU_RS18920	0.46	-2.4
4,279,841	+		PFLU_RS18920	0.48	-1.6
4,279,841	+		PFLU_RS18920	0.48	-1.4
4,279,841	+		PFLU_RS18920	0.48	-0.1
4,279,841	+		PFLU_RS18920	0.48	-2.9
4,279,841	+		PFLU_RS18920	0.48	-3.3
4,279,841	+		PFLU_RS18920	0.48	+0.0
4,279,841	+		PFLU_RS18920	0.48	-3.5
4,279,841	+		PFLU_RS18920	0.48	+0.4
4,279,841	+		PFLU_RS18920	0.48	-0.4
4,279,841	+		PFLU_RS18920	0.48	-1.8
4,279,841	+		PFLU_RS18920	0.48	-1.9
4,279,841	+		PFLU_RS18920	0.48	-2.9
4,279,841	+		PFLU_RS18920	0.48	-1.3
4,279,841	+		PFLU_RS18920	0.48	-1.6
4,279,842	-		PFLU_RS18920	0.49	-2.9
4,279,842	-		PFLU_RS18920	0.49	-1.1
4,279,842	-		PFLU_RS18920	0.49	-0.1
4,279,842	-		PFLU_RS18920	0.49	-1.0
4,279,842	-		PFLU_RS18920	0.49	-0.1
4,279,842	-		PFLU_RS18920	0.49	-2.0
4,279,842	-		PFLU_RS18920	0.49	-2.3
4,279,842	-		PFLU_RS18920	0.49	+1.6
4,279,842	-		PFLU_RS18920	0.49	-1.9
4,279,842	-		PFLU_RS18920	0.49	-3.7
4,279,842	-		PFLU_RS18920	0.49	+0.1
4,279,842	-		PFLU_RS18920	0.49	+0.1
4,279,842	-		PFLU_RS18920	0.49	-2.7
4,279,845	+		PFLU_RS18920	0.49	-1.6
4,279,845	+		PFLU_RS18920	0.49	-1.1
4,279,845	+		PFLU_RS18920	0.49	-3.5
4,279,845	+		PFLU_RS18920	0.49	-0.6
4,279,845	+		PFLU_RS18920	0.49	-2.3
4,279,845	+		PFLU_RS18920	0.49	-2.6
4,279,845	+		PFLU_RS18920	0.49	-2.3
4,279,845	+		PFLU_RS18920	0.49	-0.6
4,279,845	+		PFLU_RS18920	0.49	-0.1
4,279,845	+		PFLU_RS18920	0.49	-1.4
4,279,845	+		PFLU_RS18920	0.49	-0.9
4,279,845	+		PFLU_RS18920	0.49	-2.0
4,279,845	+		PFLU_RS18920	0.49	-0.9
4,279,845	+		PFLU_RS18920	0.49	+1.4
4,279,845	+		PFLU_RS18920	0.49	-2.6
4,279,845	+		PFLU_RS18920	0.49	-1.1
4,279,845	+		PFLU_RS18920	0.49	-1.9
4,279,845	+		PFLU_RS18920	0.49	-2.0
4,279,845	+		PFLU_RS18920	0.49	-1.9
4,279,845	+		PFLU_RS18920	0.49	+0.3
4,279,845	+		PFLU_RS18920	0.49	-3.1
4,279,845	+		PFLU_RS18920	0.49	-1.2
4,279,845	+		PFLU_RS18920	0.49	-2.9
4,279,845	+		PFLU_RS18920	0.49	+1.2
4,279,845	+		PFLU_RS18920	0.49	-0.4
4,279,845	+		PFLU_RS18920	0.49	-1.8
4,279,845	+		PFLU_RS18920	0.49	+2.0
4,279,845	+		PFLU_RS18920	0.49	-1.9
4,279,846	-		PFLU_RS18920	0.49	-1.4
4,279,846	-		PFLU_RS18920	0.49	-1.6
4,279,846	-		PFLU_RS18920	0.49	-2.2
4,279,846	-		PFLU_RS18920	0.49	-3.2
4,279,846	-		PFLU_RS18920	0.49	-0.7
4,279,846	-		PFLU_RS18920	0.49	-2.6
4,279,846	-		PFLU_RS18920	0.49	-2.7
4,279,846	-		PFLU_RS18920	0.49	-0.6
4,279,846	-		PFLU_RS18920	0.49	-2.8
4,279,846	-		PFLU_RS18920	0.49	-1.7
4,279,846	-		PFLU_RS18920	0.49	-2.4
4,279,846	-		PFLU_RS18920	0.49	-0.8
4,279,846	-		PFLU_RS18920	0.49	-3.0
4,279,846	-		PFLU_RS18920	0.49	-0.7
4,279,846	-		PFLU_RS18920	0.49	-1.6
4,279,846	-		PFLU_RS18920	0.49	+2.2
4,279,846	-		PFLU_RS18920	0.49	+0.3
4,279,846	-		PFLU_RS18920	0.49	-2.5
4,279,846	-		PFLU_RS18920	0.49	-1.1
4,279,846	-		PFLU_RS18920	0.49	+1.0
4,279,846	-		PFLU_RS18920	0.49	-1.1
4,279,846	-		PFLU_RS18920	0.49	-3.2
4,279,846	-		PFLU_RS18920	0.49	-3.1
4,279,846	-		PFLU_RS18920	0.49	-1.9
4,279,846	-		PFLU_RS18920	0.49	-0.7
4,279,846	-		PFLU_RS18920	0.49	-0.4
4,280,186	+		PFLU_RS18920	0.68	-2.2
4,280,187	-		PFLU_RS18920	0.69	-1.3
4,280,309	+		PFLU_RS18920	0.76	+0.2
4,280,309	+		PFLU_RS18920	0.76	-3.0
4,280,310	-		PFLU_RS18920	0.76	-2.8
4,280,501	+		PFLU_RS18920	0.87	-1.4
4,280,502	-		PFLU_RS18920	0.87	-3.2
4,280,502	-		PFLU_RS18920	0.87	-0.6
4,280,599	-				-2.0
4,280,600	+				-1.7
4,280,600	+				-0.4
4,280,600	+				-2.6
4,280,600	+				+0.9
4,280,600	+				+0.5
4,280,600	+				-1.4
4,280,600	+				+1.2
4,280,600	+				-0.9
4,280,600	+				-2.2
4,280,600	+				-1.4
4,280,601	-				+0.2
4,280,601	-				-2.6
4,280,601	-				-1.8
4,280,601	-				-2.4
4,280,601	-				-2.5
4,280,709	+				+0.3
4,280,710	-				-2.3
4,280,730	+				-0.4
4,280,730	+				+0.9
4,280,731	-				+1.4
4,280,731	-				+1.7
4,280,743	+				-2.3
4,280,743	+				-0.4
4,280,744	-				+0.9
4,280,744	-				+1.9
4,280,744	-				+0.1
4,280,744	-				+0.5
4,280,764	+				-1.1
4,280,764	+				+0.6
4,280,765	-				+1.7
4,280,765	-				-2.3
4,280,861	+		PFLU_RS18925	0.10	+2.1
4,280,861	+		PFLU_RS18925	0.10	+0.4
4,280,861	+		PFLU_RS18925	0.10	-1.3
4,280,861	+		PFLU_RS18925	0.10	+0.7
4,280,862	-		PFLU_RS18925	0.10	-0.3
4,280,886	+		PFLU_RS18925	0.14	-1.3
4,280,887	-		PFLU_RS18925	0.14	-1.1
4,280,887	-		PFLU_RS18925	0.14	-0.9
4,280,887	-		PFLU_RS18925	0.14	+0.1
4,280,900	-		PFLU_RS18925	0.16	-2.5
4,280,900	-		PFLU_RS18925	0.16	-1.3
4,280,900	-		PFLU_RS18925	0.16	+2.9
4,280,901	+		PFLU_RS18925	0.16	-0.1
4,280,902	-		PFLU_RS18925	0.16	-2.4
4,280,902	-		PFLU_RS18925	0.16	+3.4
4,280,902	-		PFLU_RS18925	0.16	+1.5
4,280,913	+		PFLU_RS18925	0.18	+0.9
4,281,003	+		PFLU_RS18925	0.32	+1.2
4,281,003	+		PFLU_RS18925	0.32	-1.3
4,281,004	-		PFLU_RS18925	0.32	-1.9
4,281,093	+		PFLU_RS18925	0.46	+0.9
4,281,103	-		PFLU_RS18925	0.47	+2.1
4,281,307	-		PFLU_RS18925	0.79	+0.9
4,281,331	+		PFLU_RS18925	0.82	+1.2
4,281,331	+		PFLU_RS18925	0.82	+2.5
4,281,331	+		PFLU_RS18925	0.82	-1.7
4,281,331	+		PFLU_RS18925	0.82	+3.0
4,281,332	-		PFLU_RS18925	0.82	-0.3
4,281,332	-		PFLU_RS18925	0.82	-0.4
4,281,333	+		PFLU_RS18925	0.83	+3.7
4,281,333	+		PFLU_RS18925	0.83	+2.7
4,281,333	+		PFLU_RS18925	0.83	-0.4
4,281,333	+		PFLU_RS18925	0.83	+1.9
4,281,333	+		PFLU_RS18925	0.83	+2.9
4,281,333	+		PFLU_RS18925	0.83	-0.4
4,281,333	+		PFLU_RS18925	0.83	-2.4
4,281,333	+		PFLU_RS18925	0.83	-0.7
4,281,333	+		PFLU_RS18925	0.83	+1.8
4,281,333	+		PFLU_RS18925	0.83	-0.1
4,281,333	+		PFLU_RS18925	0.83	-1.1
4,281,334	-		PFLU_RS18925	0.83	+2.6
4,281,334	-		PFLU_RS18925	0.83	-0.1
4,281,334	-		PFLU_RS18925	0.83	-1.9
4,281,334	-		PFLU_RS18925	0.83	+1.9
4,281,334	-		PFLU_RS18925	0.83	+1.0
4,281,334	-		PFLU_RS18925	0.83	+0.1
4,281,334	-		PFLU_RS18925	0.83	+2.7
4,281,334	-		PFLU_RS18925	0.83	-0.4
4,281,334	-		PFLU_RS18925	0.83	+1.1
4,281,334	-		PFLU_RS18925	0.83	+2.6
4,281,334	-		PFLU_RS18925	0.83	-3.1
4,281,334	-		PFLU_RS18925	0.83	+0.5
4,281,334	-		PFLU_RS18925	0.83	-1.6
4,281,334	-		PFLU_RS18925	0.83	-1.6
4,281,358	-		PFLU_RS18925	0.86	+0.0
4,281,358	-		PFLU_RS18925	0.86	-1.6
4,281,366	+		PFLU_RS18925	0.88	-0.9
4,281,367	-		PFLU_RS18925	0.88	+1.9
4,281,393	+				-2.0
4,281,393	+				+3.9
4,281,445	+				-0.4
4,281,445	+				+0.5
4,281,445	+				-1.9
4,281,445	+				-1.4
4,281,446	-				-0.7
4,281,446	-				+4.7
4,281,487	+				+1.9