Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS18875

Experiment: 4-Aminobutyric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS18870 and PFLU_RS18875 are separated by 530 nucleotidesPFLU_RS18875 and PFLU_RS18880 are separated by 15 nucleotides PFLU_RS18870: PFLU_RS18870 - hypothetical protein, at 4,264,666 to 4,265,232 _RS18870 PFLU_RS18875: PFLU_RS18875 - cysteine--tRNA ligase, at 4,265,763 to 4,267,151 _RS18875 PFLU_RS18880: PFLU_RS18880 - glutamine--tRNA ligase/YqeY domain fusion protein, at 4,267,167 to 4,268,867 _RS18880 Position (kb) 4265 4266 4267 4268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4265.002 kb on + strand, within PFLU_RS18870at 4265.003 kb on - strand, within PFLU_RS18870at 4265.003 kb on - strand, within PFLU_RS18870at 4265.003 kb on - strand, within PFLU_RS18870at 4265.003 kb on - strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.042 kb on + strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.043 kb on - strand, within PFLU_RS18870at 4265.044 kb on + strand, within PFLU_RS18870at 4265.044 kb on + strand, within PFLU_RS18870at 4265.044 kb on + strand, within PFLU_RS18870at 4265.044 kb on + strand, within PFLU_RS18870at 4265.045 kb on - strand, within PFLU_RS18870at 4265.045 kb on - strand, within PFLU_RS18870at 4265.045 kb on - strand, within PFLU_RS18870at 4265.045 kb on - strand, within PFLU_RS18870at 4265.045 kb on - strand, within PFLU_RS18870at 4265.045 kb on - strand, within PFLU_RS18870at 4265.057 kb on + strand, within PFLU_RS18870at 4265.057 kb on + strand, within PFLU_RS18870at 4265.057 kb on + strand, within PFLU_RS18870at 4265.057 kb on + strand, within PFLU_RS18870at 4265.057 kb on + strand, within PFLU_RS18870at 4265.057 kb on + strand, within PFLU_RS18870at 4265.057 kb on + strand, within PFLU_RS18870at 4265.058 kb on - strand, within PFLU_RS18870at 4265.058 kb on - strand, within PFLU_RS18870at 4265.058 kb on - strand, within PFLU_RS18870at 4265.058 kb on - strand, within PFLU_RS18870at 4265.058 kb on - strand, within PFLU_RS18870at 4265.058 kb on - strand, within PFLU_RS18870at 4265.058 kb on - strand, within PFLU_RS18870at 4265.058 kb on - strand, within PFLU_RS18870at 4265.077 kb on + strand, within PFLU_RS18870at 4265.077 kb on + strand, within PFLU_RS18870at 4265.077 kb on + strand, within PFLU_RS18870at 4265.077 kb on + strand, within PFLU_RS18870at 4265.077 kb on + strand, within PFLU_RS18870at 4265.077 kb on + strand, within PFLU_RS18870at 4265.077 kb on + strand, within PFLU_RS18870at 4265.078 kb on - strand, within PFLU_RS18870at 4265.078 kb on - strand, within PFLU_RS18870at 4265.078 kb on - strand, within PFLU_RS18870at 4265.078 kb on - strand, within PFLU_RS18870at 4265.078 kb on - strand, within PFLU_RS18870at 4265.082 kb on + strand, within PFLU_RS18870at 4265.082 kb on + strand, within PFLU_RS18870at 4265.188 kb on + strandat 4265.188 kb on + strandat 4265.188 kb on + strandat 4265.188 kb on + strandat 4265.188 kb on + strandat 4265.189 kb on - strandat 4265.189 kb on - strandat 4265.203 kb on + strandat 4265.203 kb on + strandat 4265.204 kb on - strandat 4265.204 kb on - strandat 4265.270 kb on - strandat 4265.270 kb on - strandat 4265.387 kb on + strandat 4265.387 kb on + strandat 4265.387 kb on + strandat 4265.388 kb on - strandat 4265.388 kb on - strandat 4265.388 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.470 kb on - strandat 4265.700 kb on + strandat 4265.701 kb on - strandat 4265.701 kb on - strandat 4267.164 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Aminobutyric (C)
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4,265,002 + PFLU_RS18870 0.59 -1.1
4,265,003 - PFLU_RS18870 0.59 +1.4
4,265,003 - PFLU_RS18870 0.59 +0.9
4,265,003 - PFLU_RS18870 0.59 +2.7
4,265,003 - PFLU_RS18870 0.59 +1.2
4,265,042 + PFLU_RS18870 0.66 +0.7
4,265,042 + PFLU_RS18870 0.66 +0.6
4,265,042 + PFLU_RS18870 0.66 -2.1
4,265,042 + PFLU_RS18870 0.66 -0.2
4,265,042 + PFLU_RS18870 0.66 -0.9
4,265,042 + PFLU_RS18870 0.66 -1.3
4,265,042 + PFLU_RS18870 0.66 -2.2
4,265,042 + PFLU_RS18870 0.66 -0.1
4,265,042 + PFLU_RS18870 0.66 -1.4
4,265,042 + PFLU_RS18870 0.66 -0.1
4,265,042 + PFLU_RS18870 0.66 -0.2
4,265,042 + PFLU_RS18870 0.66 -0.4
4,265,042 + PFLU_RS18870 0.66 +1.9
4,265,042 + PFLU_RS18870 0.66 +0.6
4,265,042 + PFLU_RS18870 0.66 -0.6
4,265,042 + PFLU_RS18870 0.66 -0.4
4,265,042 + PFLU_RS18870 0.66 +0.2
4,265,042 + PFLU_RS18870 0.66 -0.3
4,265,043 - PFLU_RS18870 0.66 +1.1
4,265,043 - PFLU_RS18870 0.66 +1.6
4,265,043 - PFLU_RS18870 0.66 -2.6
4,265,043 - PFLU_RS18870 0.66 +0.6
4,265,043 - PFLU_RS18870 0.66 +1.9
4,265,043 - PFLU_RS18870 0.66 +2.5
4,265,043 - PFLU_RS18870 0.66 -2.0
4,265,043 - PFLU_RS18870 0.66 -0.2
4,265,043 - PFLU_RS18870 0.66 -2.2
4,265,043 - PFLU_RS18870 0.66 -2.4
4,265,043 - PFLU_RS18870 0.66 -0.6
4,265,043 - PFLU_RS18870 0.66 -0.1
4,265,043 - PFLU_RS18870 0.66 +0.9
4,265,043 - PFLU_RS18870 0.66 -0.9
4,265,043 - PFLU_RS18870 0.66 -2.2
4,265,043 - PFLU_RS18870 0.66 -1.1
4,265,043 - PFLU_RS18870 0.66 -1.1
4,265,043 - PFLU_RS18870 0.66 +0.4
4,265,043 - PFLU_RS18870 0.66 -0.4
4,265,044 + PFLU_RS18870 0.67 -2.9
4,265,044 + PFLU_RS18870 0.67 +2.6
4,265,044 + PFLU_RS18870 0.67 +1.6
4,265,044 + PFLU_RS18870 0.67 -2.1
4,265,045 - PFLU_RS18870 0.67 -2.1
4,265,045 - PFLU_RS18870 0.67 -0.3
4,265,045 - PFLU_RS18870 0.67 +1.2
4,265,045 - PFLU_RS18870 0.67 +0.6
4,265,045 - PFLU_RS18870 0.67 -2.1
4,265,045 - PFLU_RS18870 0.67 -0.1
4,265,057 + PFLU_RS18870 0.69 -0.5
4,265,057 + PFLU_RS18870 0.69 -2.0
4,265,057 + PFLU_RS18870 0.69 +1.5
4,265,057 + PFLU_RS18870 0.69 +2.8
4,265,057 + PFLU_RS18870 0.69 -2.4
4,265,057 + PFLU_RS18870 0.69 -1.6
4,265,057 + PFLU_RS18870 0.69 -0.4
4,265,058 - PFLU_RS18870 0.69 -0.7
4,265,058 - PFLU_RS18870 0.69 +0.4
4,265,058 - PFLU_RS18870 0.69 +2.6
4,265,058 - PFLU_RS18870 0.69 -1.7
4,265,058 - PFLU_RS18870 0.69 +0.5
4,265,058 - PFLU_RS18870 0.69 -1.1
4,265,058 - PFLU_RS18870 0.69 -0.4
4,265,058 - PFLU_RS18870 0.69 -0.9
4,265,077 + PFLU_RS18870 0.72 -1.7
4,265,077 + PFLU_RS18870 0.72 +1.9
4,265,077 + PFLU_RS18870 0.72 +1.0
4,265,077 + PFLU_RS18870 0.72 +1.6
4,265,077 + PFLU_RS18870 0.72 +0.7
4,265,077 + PFLU_RS18870 0.72 +2.7
4,265,077 + PFLU_RS18870 0.72 +0.3
4,265,078 - PFLU_RS18870 0.73 +1.3
4,265,078 - PFLU_RS18870 0.73 -1.3
4,265,078 - PFLU_RS18870 0.73 +1.0
4,265,078 - PFLU_RS18870 0.73 -2.2
4,265,078 - PFLU_RS18870 0.73 -0.7
4,265,082 + PFLU_RS18870 0.73 -2.5
4,265,082 + PFLU_RS18870 0.73 -0.3
4,265,188 + +2.1
4,265,188 + -0.1
4,265,188 + -0.1
4,265,188 + -2.0
4,265,188 + +0.9
4,265,189 - -1.1
4,265,189 - +1.1
4,265,203 + -0.1
4,265,203 + -1.8
4,265,204 - -1.6
4,265,204 - +2.6
4,265,270 - -0.9
4,265,270 - -1.6
4,265,387 + -0.1
4,265,387 + +1.6
4,265,387 + +1.7
4,265,388 - +3.0
4,265,388 - -1.9
4,265,388 - -0.7
4,265,470 - -1.6
4,265,470 - +0.0
4,265,470 - -3.2
4,265,470 - -0.6
4,265,470 - -0.4
4,265,470 - -0.0
4,265,470 - +0.8
4,265,470 - +0.9
4,265,470 - +3.0
4,265,470 - -1.9
4,265,470 - -2.5
4,265,470 - -3.3
4,265,700 + +0.1
4,265,701 - +0.1
4,265,701 - -0.0
4,267,164 - -2.2

Or see this region's nucleotide sequence