Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS16820

Experiment: 4-Aminobutyric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Aminobutyric (C)
3,815,238	+				-0.0
3,815,238	+				-0.2
3,815,238	+				-1.4
3,815,239	-				-0.1
3,815,239	-				+0.1
3,815,239	-				+1.1
3,815,239	-				+1.3
3,815,367	-				+0.7
3,815,386	+				-2.4
3,815,387	-				-0.4
3,815,586	+		PFLU_RS16815	0.33	-1.3
3,815,587	-		PFLU_RS16815	0.33	-2.4
3,815,587	-		PFLU_RS16815	0.33	-2.4
3,815,587	-		PFLU_RS16815	0.33	+1.1
3,815,587	-		PFLU_RS16815	0.33	-2.4
3,815,610	-		PFLU_RS16815	0.36	+1.0
3,815,929	+		PFLU_RS16815	0.75	+0.1
3,815,929	+		PFLU_RS16815	0.75	-0.7
3,815,930	-		PFLU_RS16815	0.75	-1.1
3,815,930	-		PFLU_RS16815	0.75	+1.9
3,815,930	-		PFLU_RS16815	0.75	-0.5
3,815,930	-		PFLU_RS16815	0.75	-1.1
3,815,956	+		PFLU_RS16815	0.78	-0.6
3,815,956	+		PFLU_RS16815	0.78	+1.1
3,815,956	+		PFLU_RS16815	0.78	-1.3
3,815,956	+		PFLU_RS16815	0.78	+2.0
3,815,957	-		PFLU_RS16815	0.78	+2.5
3,816,147	+				-1.6
3,816,147	+				-2.3
3,816,147	+				+0.6
3,816,147	+				+1.0
3,816,147	+				-1.7
3,816,147	+				-1.3
3,816,147	+				-0.4
3,816,147	+				+0.1
3,816,147	+				+1.5
3,816,147	+				-2.1
3,816,147	+				-0.9
3,816,148	-				+0.1
3,816,148	-				+0.3
3,816,148	-				-1.4
3,816,148	-				-0.1
3,816,148	-				+0.1
3,816,148	-				+2.7
3,816,148	-				+1.7
3,816,148	-				+2.5
3,816,152	+				-1.9
3,816,172	-				+0.5
3,816,187	+				+0.7
3,816,187	+				-1.9
3,816,187	+				+2.7
3,816,188	-				+2.4
3,816,188	-				+0.1
3,816,208	+				+1.4
3,816,208	+				-2.7
3,816,208	+				+1.7
3,816,208	+				-3.2
3,816,209	-				-1.7
3,816,209	-				+2.5
3,816,209	-				+0.0
3,816,209	-				+2.4
3,816,209	-				+3.0
3,816,219	+				-2.4
3,816,219	+				-2.2
3,816,219	+				-0.6
3,816,219	+				-1.1
3,816,219	+				+0.1
3,816,219	+				+0.5
3,816,219	+				-1.6
3,816,219	+				+0.2
3,816,219	+				-0.9
3,816,220	-				-0.9
3,816,220	-				+3.7
3,816,220	-				+0.9
3,816,220	-				-1.1
3,816,220	-				+0.7
3,816,220	-				-1.4
3,816,220	-				+2.3
3,816,302	-				-1.4
3,816,369	-		PFLU_RS16820	0.11	-2.9
3,816,390	-		PFLU_RS16820	0.13	+0.9
3,816,390	-		PFLU_RS16820	0.13	+0.8
3,816,390	-		PFLU_RS16820	0.13	-1.4
3,816,390	-		PFLU_RS16820	0.13	+0.9
3,816,390	-		PFLU_RS16820	0.13	-1.3
3,816,390	-		PFLU_RS16820	0.13	+1.5
3,816,809	+		PFLU_RS16820	0.48	+1.5
3,816,827	+		PFLU_RS16820	0.49	-1.3
3,816,919	-		PFLU_RS16820	0.57	+2.5
3,816,944	+		PFLU_RS16820	0.59	+0.2
3,816,945	-		PFLU_RS16820	0.59	+1.7
3,816,945	-		PFLU_RS16820	0.59	-1.4
3,816,950	+		PFLU_RS16820	0.59	-1.3
3,816,950	+		PFLU_RS16820	0.59	-1.1
3,816,950	+		PFLU_RS16820	0.59	-2.7
3,816,950	+		PFLU_RS16820	0.59	-0.8
3,816,950	+		PFLU_RS16820	0.59	+0.7
3,816,950	+		PFLU_RS16820	0.59	-2.9
3,816,950	+		PFLU_RS16820	0.59	-0.3
3,816,951	-		PFLU_RS16820	0.59	-0.1
3,816,951	-		PFLU_RS16820	0.59	+2.5
3,816,951	-		PFLU_RS16820	0.59	-1.7
3,816,951	-		PFLU_RS16820	0.59	+0.7
3,816,951	-		PFLU_RS16820	0.59	-1.1
3,816,951	-		PFLU_RS16820	0.59	-2.7
3,816,951	-		PFLU_RS16820	0.59	+0.1
3,816,951	-		PFLU_RS16820	0.59	+0.8
3,816,951	-		PFLU_RS16820	0.59	-2.0
3,816,951	-		PFLU_RS16820	0.59	+1.1
3,816,951	-		PFLU_RS16820	0.59	+2.4
3,816,951	-		PFLU_RS16820	0.59	-0.9
3,816,951	-		PFLU_RS16820	0.59	+0.7
3,816,951	-		PFLU_RS16820	0.59	-1.8
3,816,971	+		PFLU_RS16820	0.61	-1.1
3,816,971	+		PFLU_RS16820	0.61	-0.3
3,816,971	+		PFLU_RS16820	0.61	-2.1
3,816,971	+		PFLU_RS16820	0.61	-1.7
3,816,971	+		PFLU_RS16820	0.61	-0.9
3,816,971	+		PFLU_RS16820	0.61	+1.3
3,816,971	+		PFLU_RS16820	0.61	-2.7
3,816,971	+		PFLU_RS16820	0.61	+2.4
3,816,972	-		PFLU_RS16820	0.61	+2.0
3,816,972	-		PFLU_RS16820	0.61	-0.9
3,816,972	-		PFLU_RS16820	0.61	-0.6
3,816,983	+		PFLU_RS16820	0.62	-0.6
3,816,983	+		PFLU_RS16820	0.62	-0.6
3,816,983	+		PFLU_RS16820	0.62	-2.4
3,816,983	+		PFLU_RS16820	0.62	+1.3
3,816,984	-		PFLU_RS16820	0.62	-0.3
3,816,984	-		PFLU_RS16820	0.62	+0.7
3,816,984	-		PFLU_RS16820	0.62	-1.1
3,817,028	+		PFLU_RS16820	0.66	+0.7
3,817,028	+		PFLU_RS16820	0.66	-2.7
3,817,028	+		PFLU_RS16820	0.66	-1.6
3,817,028	+		PFLU_RS16820	0.66	+1.2
3,817,028	+		PFLU_RS16820	0.66	-1.7
3,817,028	+		PFLU_RS16820	0.66	-0.4
3,817,028	+		PFLU_RS16820	0.66	-2.8
3,817,028	+		PFLU_RS16820	0.66	-1.3
3,817,028	+		PFLU_RS16820	0.66	-1.7
3,817,028	+		PFLU_RS16820	0.66	-0.6
3,817,028	+		PFLU_RS16820	0.66	+0.6
3,817,028	+		PFLU_RS16820	0.66	-0.9
3,817,028	+		PFLU_RS16820	0.66	-0.3
3,817,028	+		PFLU_RS16820	0.66	-1.7
3,817,028	+		PFLU_RS16820	0.66	-0.8
3,817,028	-		PFLU_RS16820	0.66	-1.0
3,817,029	-		PFLU_RS16820	0.66	-2.6
3,817,029	-		PFLU_RS16820	0.66	-0.4
3,817,029	-		PFLU_RS16820	0.66	+0.6
3,817,029	-		PFLU_RS16820	0.66	+0.2
3,817,029	-		PFLU_RS16820	0.66	-2.4
3,817,029	-		PFLU_RS16820	0.66	-1.1
3,817,029	-		PFLU_RS16820	0.66	-0.6
3,817,029	-		PFLU_RS16820	0.66	-1.2
3,817,029	-		PFLU_RS16820	0.66	-1.4
3,817,029	-		PFLU_RS16820	0.66	+1.0
3,817,029	-		PFLU_RS16820	0.66	-1.6
3,817,102	+		PFLU_RS16820	0.72	+0.7
3,817,160	+		PFLU_RS16820	0.76	+1.5
3,817,160	+		PFLU_RS16820	0.76	-1.6
3,817,160	+		PFLU_RS16820	0.76	-2.3
3,817,160	+		PFLU_RS16820	0.76	-1.1
3,817,160	+		PFLU_RS16820	0.76	+1.0
3,817,207	+		PFLU_RS16820	0.80	+1.9
3,817,207	+		PFLU_RS16820	0.80	-0.7
3,817,208	-		PFLU_RS16820	0.80	-0.6
3,817,208	-		PFLU_RS16820	0.80	+0.5
3,817,208	-		PFLU_RS16820	0.80	-1.9
3,817,367	+				+3.1
3,817,367	+				+0.1
3,817,367	+				+1.6
3,817,367	+				+2.0
3,817,367	+				-1.7
3,817,367	+				-2.0
3,817,368	-				+2.8
3,817,429	+				-2.1
3,817,429	+				+4.1
3,817,453	-				+1.7
3,817,513	+				+0.6
3,817,513	+				-2.0
3,817,513	+				+0.9
3,817,513	+				-0.6
3,817,513	+				-2.1
3,817,513	+				+0.6
3,817,513	+				-0.6
3,817,514	-				+0.7
3,817,514	-				+0.2
3,817,720	+		PFLU_RS16825	0.13	-2.4
3,817,720	+		PFLU_RS16825	0.13	+2.7
3,817,721	-		PFLU_RS16825	0.13	-1.3
3,817,721	-		PFLU_RS16825	0.13	+0.1
3,817,721	-		PFLU_RS16825	0.13	+0.9
3,817,870	-		PFLU_RS16825	0.26	+1.1
3,817,891	+		PFLU_RS16825	0.28	-1.7
3,817,892	-		PFLU_RS16825	0.28	+1.9
3,817,892	-		PFLU_RS16825	0.28	+0.3
3,817,892	-		PFLU_RS16825	0.28	+2.3
3,818,001	+		PFLU_RS16825	0.38	+2.3
3,818,001	+		PFLU_RS16825	0.38	+0.9
3,818,002	-		PFLU_RS16825	0.38	-0.3
3,818,015	-		PFLU_RS16825	0.39	+0.7
3,818,132	+		PFLU_RS16825	0.50	+0.1
3,818,132	+		PFLU_RS16825	0.50	+1.8
3,818,154	+		PFLU_RS16825	0.51	+0.7